ISVbsp4

  • Family ISNCY
  • Group IS1202
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003242 ND Vibrio sp.
Vibrio sp. EJY3
Vibrio parahaemolyticus O1:Kuk str. FDA_R31
DNA section
IS Length : 1737 bp

Ends


IR Length : 19/24

IRL : TGTGATCACCAAGCGATTCTGTCGTACCTTAACTACCAACCGATTTTGTC
IRR : TGTGATTACCAAGGGAGCCTGACGGGATAAATCCCAAGCGACTTTGTCGT

Insertion site


Left flankDirect repeatRight flankDR Length
CTGAGGTAGTGCTTGCTCATACCCCGTGCTCATACC16
GCGTGTTTGCTATAGGCAGTTCATATCACCTCTGTCA17

DNA sequence

TGTGATCACCAAGCGATTCTGTCGTACCTTAACTACCAACCGATTTTGTCGGTGAACTAATTACCAAGGGAAAATGACGGATCCATTTCTATACCTAACC
CTTTGAATAGGTCAAATCACCATTCAGGGGTTAGTAAGGATGATCATCATGGACTCTCGCTCCCAGCTTACTGTTGATGTGATCGCTAAAGTCACTCAAG
GTAAGATCAGCATTCACAGTGCTGCCAAACTCCTCAATAAATCCCGTCGTACCATAGAGCGTTATCTCCACCGCTATCGGCGTGAAGGCATACGCTTTGT
TGTTCATGGCAATAAAGGACGTGAGCCTGTCAATAAAACCCCTGATTCACTGAAAAGACAGGTTCAGCAACTGATCCAAACTAAGTACTTCGATTTCAAT
TTGCAGCATCTGGCCGAGTTGCTCACGGTCAACGAAGGCTTGACCATCAAGCGGGAAACTTTGCGAAAGTGGGCGCACGCTATCCACCATGTGAAGCGAG
CCAAGCGTCGTCGTAGCCGAGTAAGAAAGTACAGGGAACGAATGGAGCAGCCTGGACTGATGCTGCAAATGGACGGCAGTCCGCATCAATGGTTTGGTGA
GCATCGCTCATGCTTGATTGCCATCATCGACGATGCGACCAGTGATATCCATGCCGAGTTCTTCCCTTCCGAAACCACGGAAGGCTGTATGAAAGTCATG
AAGGCGTATATCGAAAAGCGAGGTCTGTTTAAGACGCTCTACGTCGATAGAGCGGGTATATTCGGTGGTCCAAAACGCAGTAACTTCTCTCAGATGCAAC
GCGCTTGTGAAGAGCTAGGGATCGAAATCATCTTTGCGAATTCGCCCCAAGGCAAAGGACGTGTCGAACGGGCATTCGATACGTTCCAAGACAGGCTGGT
TCCAGAGCTTCGGCTGCATCATATTACCGATATTCAAAGCGCCAACGAGTATCTTCAAAACCAATTCATTCCACTGTACTGGCAACAGAAAATCGCGGTG
CAGGCGAAGAACCCGAGGTCGGCGTTCAAGGTTGTCCCTGAACACATCAACCTTGATACGGTCTGTGTTCACAAGGAATATCGCAAGGTTCGCCGAGATC
ATACCTTCAGTTATAACAATAAAATGTATCTCATCGACTCACCCATAAGGCACTCCATCGTCAATCAGAAACTGGAAATACGCTGTCAGTTCGATGGTGC
ATTCTCAGTCTATTTTGGTCACCGAAAACTGCATATTACCGAGTTAGAAGAGCCACCAAGAGCGAGTGAGTATGGGATGGAAGTCCAGCGCAAGTTGGAT
GTCATCGAGCTTGCCGACCGTCTGGGTAATGCGACGGAAGCCGCTCGGCTCACTGGTTGCTCGCGCCGAAGTATCTACAACTATCAAAAGGTATTAGCCG
AGGAAGGCATCCTTGGCCTTAAGCGCATTAACAAACCGCTGCACCGCAGCAAAAACAGCATACCTGAAGAAACCGAACACAAAATTATCGAGCTGACCTT
AAACAATCCGTATCAAACCTCAGTACAGTTGAGAACCATACTAAAGAAGGAGTACAACATCACCGTCAGCAGTTGCACGATACGAAATATCTGGAAGCGC
GAGGCACTAAATACCAGAGCGCTGAGAATACAACGCTCAGCGGCATTAAATAAAGAAGTCTAGCCTGTGGGCTAGACTTAAAGGTGAACGACAAAGTCGC
TTGGGATTTATCCCGTCAGGCTCCCTTGGTAATCACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1515 bp504 aa1491663+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDSRSQLTVDVIAKVTQGKISIHSAAKLLNKSRRTIERYLHRYRREGIRFVVHGNKGREPVNKTPDSLKRQVQQLIQTKYFDFNLQHLAELLTVNEGLTI
KRETLRKWAHAIHHVKRAKRRRSRVRKYRERMEQPGLMLQMDGSPHQWFGEHRSCLIAIIDDATSDIHAEFFPSETTEGCMKVMKAYIEKRGLFKTLYVD
RAGIFGGPKRSNFSQMQRACEELGIEIIFANSPQGKGRVERAFDTFQDRLVPELRLHHITDIQSANEYLQNQFIPLYWQQKIAVQAKNPRSAFKVVPEHI
NLDTVCVHKEYRKVRRDHTFSYNNKMYLIDSPIRHSIVNQKLEIRCQFDGAFSVYFGHRKLHITELEEPPRASEYGMEVQRKLDVIELADRLGNATEAAR
LTGCSRRSIYNYQKVLAEEGILGLKRINKPLHRSKNSIPEETEHKIIELTLNNPYQTSVQLRTILKKEYNITVSSCTIRNIWKREALNTRALRIQRSAAL
NKEV

 

Blast result :
Comments
ISVbsp4 is 92% aa similar to ISShha1.
References
1] ISfinder submission (2017)
2] Roh,H., Yun,E.J., Lee,S., Ko,H.J., Kim,S., Kim,B.Y., Song,H., Lim,K.I., Kim,K.H. and Choi,I.G. (2012) J. Bacteriol. 194 (10), 2773-2774