ISVbsp4
- Family ISNCY
- Group IS1202
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003242 | ND | Vibrio sp. | Vibrio sp. EJY3 Vibrio parahaemolyticus O1:Kuk str. FDA_R31 |
DNA section
IS Length : 1737 bp
Ends
IR Length : 19/24
IRL : TGTGATCACCAAGCGATTCTGTCGTACCTTAACTACCAACCGATTTTGTC
IRR : TGTGATTACCAAGGGAGCCTGACGGGATAAATCCCAAGCGACTTTGTCGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTGAGGTAGT | GCTTGCTCATACCCCG | TGCTCATACC | 16 |
GCGTGTTTGC | TATAGGCAGTTCATATC | ACCTCTGTCA | 17 |
DNA sequence
TGTGATCACCAAGCGATTCTGTCGTACCTTAACTACCAACCGATTTTGTCGGTGAACTAATTACCAAGGGAAAATGACGGATCCATTTCTATACCTAACC
CTTTGAATAGGTCAAATCACCATTCAGGGGTTAGTAAGGATGATCATCATGGACTCTCGCTCCCAGCTTACTGTTGATGTGATCGCTAAAGTCACTCAAG
GTAAGATCAGCATTCACAGTGCTGCCAAACTCCTCAATAAATCCCGTCGTACCATAGAGCGTTATCTCCACCGCTATCGGCGTGAAGGCATACGCTTTGT
TGTTCATGGCAATAAAGGACGTGAGCCTGTCAATAAAACCCCTGATTCACTGAAAAGACAGGTTCAGCAACTGATCCAAACTAAGTACTTCGATTTCAAT
TTGCAGCATCTGGCCGAGTTGCTCACGGTCAACGAAGGCTTGACCATCAAGCGGGAAACTTTGCGAAAGTGGGCGCACGCTATCCACCATGTGAAGCGAG
CCAAGCGTCGTCGTAGCCGAGTAAGAAAGTACAGGGAACGAATGGAGCAGCCTGGACTGATGCTGCAAATGGACGGCAGTCCGCATCAATGGTTTGGTGA
GCATCGCTCATGCTTGATTGCCATCATCGACGATGCGACCAGTGATATCCATGCCGAGTTCTTCCCTTCCGAAACCACGGAAGGCTGTATGAAAGTCATG
AAGGCGTATATCGAAAAGCGAGGTCTGTTTAAGACGCTCTACGTCGATAGAGCGGGTATATTCGGTGGTCCAAAACGCAGTAACTTCTCTCAGATGCAAC
GCGCTTGTGAAGAGCTAGGGATCGAAATCATCTTTGCGAATTCGCCCCAAGGCAAAGGACGTGTCGAACGGGCATTCGATACGTTCCAAGACAGGCTGGT
TCCAGAGCTTCGGCTGCATCATATTACCGATATTCAAAGCGCCAACGAGTATCTTCAAAACCAATTCATTCCACTGTACTGGCAACAGAAAATCGCGGTG
CAGGCGAAGAACCCGAGGTCGGCGTTCAAGGTTGTCCCTGAACACATCAACCTTGATACGGTCTGTGTTCACAAGGAATATCGCAAGGTTCGCCGAGATC
ATACCTTCAGTTATAACAATAAAATGTATCTCATCGACTCACCCATAAGGCACTCCATCGTCAATCAGAAACTGGAAATACGCTGTCAGTTCGATGGTGC
ATTCTCAGTCTATTTTGGTCACCGAAAACTGCATATTACCGAGTTAGAAGAGCCACCAAGAGCGAGTGAGTATGGGATGGAAGTCCAGCGCAAGTTGGAT
GTCATCGAGCTTGCCGACCGTCTGGGTAATGCGACGGAAGCCGCTCGGCTCACTGGTTGCTCGCGCCGAAGTATCTACAACTATCAAAAGGTATTAGCCG
AGGAAGGCATCCTTGGCCTTAAGCGCATTAACAAACCGCTGCACCGCAGCAAAAACAGCATACCTGAAGAAACCGAACACAAAATTATCGAGCTGACCTT
AAACAATCCGTATCAAACCTCAGTACAGTTGAGAACCATACTAAAGAAGGAGTACAACATCACCGTCAGCAGTTGCACGATACGAAATATCTGGAAGCGC
GAGGCACTAAATACCAGAGCGCTGAGAATACAACGCTCAGCGGCATTAAATAAAGAAGTCTAGCCTGTGGGCTAGACTTAAAGGTGAACGACAAAGTCGC
TTGGGATTTATCCCGTCAGGCTCCCTTGGTAATCACA
CTTTGAATAGGTCAAATCACCATTCAGGGGTTAGTAAGGATGATCATCATGGACTCTCGCTCCCAGCTTACTGTTGATGTGATCGCTAAAGTCACTCAAG
GTAAGATCAGCATTCACAGTGCTGCCAAACTCCTCAATAAATCCCGTCGTACCATAGAGCGTTATCTCCACCGCTATCGGCGTGAAGGCATACGCTTTGT
TGTTCATGGCAATAAAGGACGTGAGCCTGTCAATAAAACCCCTGATTCACTGAAAAGACAGGTTCAGCAACTGATCCAAACTAAGTACTTCGATTTCAAT
TTGCAGCATCTGGCCGAGTTGCTCACGGTCAACGAAGGCTTGACCATCAAGCGGGAAACTTTGCGAAAGTGGGCGCACGCTATCCACCATGTGAAGCGAG
CCAAGCGTCGTCGTAGCCGAGTAAGAAAGTACAGGGAACGAATGGAGCAGCCTGGACTGATGCTGCAAATGGACGGCAGTCCGCATCAATGGTTTGGTGA
GCATCGCTCATGCTTGATTGCCATCATCGACGATGCGACCAGTGATATCCATGCCGAGTTCTTCCCTTCCGAAACCACGGAAGGCTGTATGAAAGTCATG
AAGGCGTATATCGAAAAGCGAGGTCTGTTTAAGACGCTCTACGTCGATAGAGCGGGTATATTCGGTGGTCCAAAACGCAGTAACTTCTCTCAGATGCAAC
GCGCTTGTGAAGAGCTAGGGATCGAAATCATCTTTGCGAATTCGCCCCAAGGCAAAGGACGTGTCGAACGGGCATTCGATACGTTCCAAGACAGGCTGGT
TCCAGAGCTTCGGCTGCATCATATTACCGATATTCAAAGCGCCAACGAGTATCTTCAAAACCAATTCATTCCACTGTACTGGCAACAGAAAATCGCGGTG
CAGGCGAAGAACCCGAGGTCGGCGTTCAAGGTTGTCCCTGAACACATCAACCTTGATACGGTCTGTGTTCACAAGGAATATCGCAAGGTTCGCCGAGATC
ATACCTTCAGTTATAACAATAAAATGTATCTCATCGACTCACCCATAAGGCACTCCATCGTCAATCAGAAACTGGAAATACGCTGTCAGTTCGATGGTGC
ATTCTCAGTCTATTTTGGTCACCGAAAACTGCATATTACCGAGTTAGAAGAGCCACCAAGAGCGAGTGAGTATGGGATGGAAGTCCAGCGCAAGTTGGAT
GTCATCGAGCTTGCCGACCGTCTGGGTAATGCGACGGAAGCCGCTCGGCTCACTGGTTGCTCGCGCCGAAGTATCTACAACTATCAAAAGGTATTAGCCG
AGGAAGGCATCCTTGGCCTTAAGCGCATTAACAAACCGCTGCACCGCAGCAAAAACAGCATACCTGAAGAAACCGAACACAAAATTATCGAGCTGACCTT
AAACAATCCGTATCAAACCTCAGTACAGTTGAGAACCATACTAAAGAAGGAGTACAACATCACCGTCAGCAGTTGCACGATACGAAATATCTGGAAGCGC
GAGGCACTAAATACCAGAGCGCTGAGAATACAACGCTCAGCGGCATTAAATAAAGAAGTCTAGCCTGTGGGCTAGACTTAAAGGTGAACGACAAAGTCGC
TTGGGATTTATCCCGTCAGGCTCCCTTGGTAATCACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1515 bp | 504 aa | 149 | 1663 | + | No |
Chemistry : DDE
ORF sequence :
MDSRSQLTVDVIAKVTQGKISIHSAAKLLNKSRRTIERYLHRYRREGIRFVVHGNKGREPVNKTPDSLKRQVQQLIQTKYFDFNLQHLAELLTVNEGLTI
KRETLRKWAHAIHHVKRAKRRRSRVRKYRERMEQPGLMLQMDGSPHQWFGEHRSCLIAIIDDATSDIHAEFFPSETTEGCMKVMKAYIEKRGLFKTLYVD
RAGIFGGPKRSNFSQMQRACEELGIEIIFANSPQGKGRVERAFDTFQDRLVPELRLHHITDIQSANEYLQNQFIPLYWQQKIAVQAKNPRSAFKVVPEHI
NLDTVCVHKEYRKVRRDHTFSYNNKMYLIDSPIRHSIVNQKLEIRCQFDGAFSVYFGHRKLHITELEEPPRASEYGMEVQRKLDVIELADRLGNATEAAR
LTGCSRRSIYNYQKVLAEEGILGLKRINKPLHRSKNSIPEETEHKIIELTLNNPYQTSVQLRTILKKEYNITVSSCTIRNIWKREALNTRALRIQRSAAL
NKEV
KRETLRKWAHAIHHVKRAKRRRSRVRKYRERMEQPGLMLQMDGSPHQWFGEHRSCLIAIIDDATSDIHAEFFPSETTEGCMKVMKAYIEKRGLFKTLYVD
RAGIFGGPKRSNFSQMQRACEELGIEIIFANSPQGKGRVERAFDTFQDRLVPELRLHHITDIQSANEYLQNQFIPLYWQQKIAVQAKNPRSAFKVVPEHI
NLDTVCVHKEYRKVRRDHTFSYNNKMYLIDSPIRHSIVNQKLEIRCQFDGAFSVYFGHRKLHITELEEPPRASEYGMEVQRKLDVIELADRLGNATEAAR
LTGCSRRSIYNYQKVLAEEGILGLKRINKPLHRSKNSIPEETEHKIIELTLNNPYQTSVQLRTILKKEYNITVSSCTIRNIWKREALNTRALRIQRSAAL
NKEV
Blast result :
Comments
ISVbsp4 is 92% aa similar to ISShha1.
References
1] ISfinder submission (2017)
2] Roh,H., Yun,E.J., Lee,S., Ko,H.J., Kim,S., Kim,B.Y., Song,H., Lim,K.I., Kim,K.H. and Choi,I.G. (2012) J. Bacteriol. 194 (10), 2773-2774
2] Roh,H., Yun,E.J., Lee,S., Ko,H.J., Kim,S., Kim,B.Y., Song,H., Lim,K.I., Kim,K.H. and Choi,I.G. (2012) J. Bacteriol. 194 (10), 2773-2774