ISSptr1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ATUS01000006 | ND | Spongiibacter tropicus | Spongiibacter tropicus DSM 19543 |
DNA section
IS Length : 1049 bp
Ends
IR Length : 23
IRL : AAGGGGTATCCATTTAGCTCCACATAGCGTATAACTACTGGATGGATATC
IRR : AAGGGGTATCCATTTAGCTCCACCTCTCATTTATTCCTCCTTAGCCTTCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCAGTAGTATGTATGTATAT | NNNN | 0 |
DNA sequence
AAGGGGTATCCATTTAGCTCCACATAGCGTATAACTACTGGATGGATATCCATACTTTATCCCCGATTGCCGGCAAAGACTACCCCCAAAATTGGAATGC
ATTCCTGGACTGGTTTTCCACTGAGGATGCCTGTCTTGCTTATCTCGAAAAACTCCGTTGGCCAGAAGGCTTCGTGTGTCCATCCTGTGCCCTGGCGGGG
AAGCCGCATAGAGCGAATCGCGGTCGATTGATTTGTCGCCACTGTCGTTATCAAAGCTCTGTTACTGCCGGTACGATTTTTAGCAAGACGAGAACACCAC
TCCGAGTGTGGCTGGCGGCAGCATGGTATCTGACCAATCAGAAGCAAGGTGTAAGCGCGCTTGGCTTGCAGCGGGTATTAGGCTTGGGAAGCTACCAGAC
AGCCTGGATGATTCTGCATCGGTATCGCCGGGCGATGATCAGGCCGGGTAGAGAAAAACTGCACGGTTTGGTCGAGGTCGATGAGACCTATCTGGATATG
ACTGATGGCCGGCCGGGGGATAGAAGCAAGCGGAAAAGCCATACACAGCGCGTACTTATCATTCTTGCGGTGGAGATAAAGGAGCCCCAAGGCTTCGGTC
GGATTCGCTTGCGTCGCATTGATGATGACACGAAGGGTAATGTCCTGCCCTTTATCCAGAACTCAATAGAAACCGGCAGCCATGTCCGCACCGATGGCGC
GGGTATGTATGTGAAGCTACATGAGCTCGGTTACCAGCATGATCGAAAAGTCATGCTGGGTTCGGAAACGCCTGCACATACCTCAATGCCGGGCGTACAC
CGTGTCGCTTCACTGATTAAACGCTGGCTACTTGGCACCCATCATGGGGCTGTTCGGCCCGAACAACTTGACGCTTACCTTGATGAGTTCGTGTTCCGAT
TTAATCGCCGTTCTTCAAGATCGCGAGGGATGTTGTTTTACCGATTGTTGCAGCAGGCTGTTGCAACTGAACCGGTGACTTACGAGAACGTCGTTGTGAG
GAAGGCTAAGGAGGAATAAATGAGAGGTGGAGCTAAATGGATACCCCTT
ATTCCTGGACTGGTTTTCCACTGAGGATGCCTGTCTTGCTTATCTCGAAAAACTCCGTTGGCCAGAAGGCTTCGTGTGTCCATCCTGTGCCCTGGCGGGG
AAGCCGCATAGAGCGAATCGCGGTCGATTGATTTGTCGCCACTGTCGTTATCAAAGCTCTGTTACTGCCGGTACGATTTTTAGCAAGACGAGAACACCAC
TCCGAGTGTGGCTGGCGGCAGCATGGTATCTGACCAATCAGAAGCAAGGTGTAAGCGCGCTTGGCTTGCAGCGGGTATTAGGCTTGGGAAGCTACCAGAC
AGCCTGGATGATTCTGCATCGGTATCGCCGGGCGATGATCAGGCCGGGTAGAGAAAAACTGCACGGTTTGGTCGAGGTCGATGAGACCTATCTGGATATG
ACTGATGGCCGGCCGGGGGATAGAAGCAAGCGGAAAAGCCATACACAGCGCGTACTTATCATTCTTGCGGTGGAGATAAAGGAGCCCCAAGGCTTCGGTC
GGATTCGCTTGCGTCGCATTGATGATGACACGAAGGGTAATGTCCTGCCCTTTATCCAGAACTCAATAGAAACCGGCAGCCATGTCCGCACCGATGGCGC
GGGTATGTATGTGAAGCTACATGAGCTCGGTTACCAGCATGATCGAAAAGTCATGCTGGGTTCGGAAACGCCTGCACATACCTCAATGCCGGGCGTACAC
CGTGTCGCTTCACTGATTAAACGCTGGCTACTTGGCACCCATCATGGGGCTGTTCGGCCCGAACAACTTGACGCTTACCTTGATGAGTTCGTGTTCCGAT
TTAATCGCCGTTCTTCAAGATCGCGAGGGATGTTGTTTTACCGATTGTTGCAGCAGGCTGTTGCAACTGAACCGGTGACTTACGAGAACGTCGTTGTGAG
GAAGGCTAAGGAGGAATAAATGAGAGGTGGAGCTAAATGGATACCCCTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
978 bp | 325 aa | 42 | 1019 | + | No |
Chemistry : DDE
ORF sequence :
MDIHTLSPIAGKDYPQNWNAFLDWFSTEDACLAYLEKLRWPEGFVCPSCALAGKPHRANRGRLICRHCRYQSSVTAGTIFSKTRTPLRVWLAAAWYLTNQ
KQGVSALGLQRVLGLGSYQTAWMILHRYRRAMIRPGREKLHGLVEVDETYLDMTDGRPGDRSKRKSHTQRVLIILAVEIKEPQGFGRIRLRRIDDDTKGN
VLPFIQNSIETGSHVRTDGAGMYVKLHELGYQHDRKVMLGSETPAHTSMPGVHRVASLIKRWLLGTHHGAVRPEQLDAYLDEFVFRFNRRSSRSRGMLFY
RLLQQAVATEPVTYENVVVRKAKEE
KQGVSALGLQRVLGLGSYQTAWMILHRYRRAMIRPGREKLHGLVEVDETYLDMTDGRPGDRSKRKSHTQRVLIILAVEIKEPQGFGRIRLRRIDDDTKGN
VLPFIQNSIETGSHVRTDGAGMYVKLHELGYQHDRKVMLGSETPAHTSMPGVHRVASLIKRWLLGTHHGAVRPEQLDAYLDEFVFRFNRRSSRSRGMLFY
RLLQQAVATEPVTYENVVVRKAKEE
Blast result :
Comments
ISSptr1 is 83% aa similar to ISAisp8.
References
1] ISfinder annotation (2017)
2] Kyrpides,N., Huntemann,M., Han,J., Chen,A., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X. and Woyke,T. (2013) Direct GenBank submission.
2] Kyrpides,N., Huntemann,M., Han,J., Chen,A., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X. and Woyke,T. (2013) Direct GenBank submission.