ISSptr1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ATUS01000006 ND Spongiibacter tropicus
Spongiibacter tropicus DSM 19543
DNA section
IS Length : 1049 bp

Ends


IR Length : 23

IRL : AAGGGGTATCCATTTAGCTCCACATAGCGTATAACTACTGGATGGATATC
IRR : AAGGGGTATCCATTTAGCTCCACCTCTCATTTATTCCTCCTTAGCCTTCC

Insertion site


Left flankDirect repeatRight flankDR Length
TCAGTAGTATGTATGTATATNNNN0

DNA sequence

AAGGGGTATCCATTTAGCTCCACATAGCGTATAACTACTGGATGGATATCCATACTTTATCCCCGATTGCCGGCAAAGACTACCCCCAAAATTGGAATGC
ATTCCTGGACTGGTTTTCCACTGAGGATGCCTGTCTTGCTTATCTCGAAAAACTCCGTTGGCCAGAAGGCTTCGTGTGTCCATCCTGTGCCCTGGCGGGG
AAGCCGCATAGAGCGAATCGCGGTCGATTGATTTGTCGCCACTGTCGTTATCAAAGCTCTGTTACTGCCGGTACGATTTTTAGCAAGACGAGAACACCAC
TCCGAGTGTGGCTGGCGGCAGCATGGTATCTGACCAATCAGAAGCAAGGTGTAAGCGCGCTTGGCTTGCAGCGGGTATTAGGCTTGGGAAGCTACCAGAC
AGCCTGGATGATTCTGCATCGGTATCGCCGGGCGATGATCAGGCCGGGTAGAGAAAAACTGCACGGTTTGGTCGAGGTCGATGAGACCTATCTGGATATG
ACTGATGGCCGGCCGGGGGATAGAAGCAAGCGGAAAAGCCATACACAGCGCGTACTTATCATTCTTGCGGTGGAGATAAAGGAGCCCCAAGGCTTCGGTC
GGATTCGCTTGCGTCGCATTGATGATGACACGAAGGGTAATGTCCTGCCCTTTATCCAGAACTCAATAGAAACCGGCAGCCATGTCCGCACCGATGGCGC
GGGTATGTATGTGAAGCTACATGAGCTCGGTTACCAGCATGATCGAAAAGTCATGCTGGGTTCGGAAACGCCTGCACATACCTCAATGCCGGGCGTACAC
CGTGTCGCTTCACTGATTAAACGCTGGCTACTTGGCACCCATCATGGGGCTGTTCGGCCCGAACAACTTGACGCTTACCTTGATGAGTTCGTGTTCCGAT
TTAATCGCCGTTCTTCAAGATCGCGAGGGATGTTGTTTTACCGATTGTTGCAGCAGGCTGTTGCAACTGAACCGGTGACTTACGAGAACGTCGTTGTGAG
GAAGGCTAAGGAGGAATAAATGAGAGGTGGAGCTAAATGGATACCCCTT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
978 bp325 aa421019+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDIHTLSPIAGKDYPQNWNAFLDWFSTEDACLAYLEKLRWPEGFVCPSCALAGKPHRANRGRLICRHCRYQSSVTAGTIFSKTRTPLRVWLAAAWYLTNQ
KQGVSALGLQRVLGLGSYQTAWMILHRYRRAMIRPGREKLHGLVEVDETYLDMTDGRPGDRSKRKSHTQRVLIILAVEIKEPQGFGRIRLRRIDDDTKGN
VLPFIQNSIETGSHVRTDGAGMYVKLHELGYQHDRKVMLGSETPAHTSMPGVHRVASLIKRWLLGTHHGAVRPEQLDAYLDEFVFRFNRRSSRSRGMLFY
RLLQQAVATEPVTYENVVVRKAKEE

 

Blast result :
Comments
ISSptr1 is 83% aa similar to ISAisp8.
References
1] ISfinder annotation (2017)
2] Kyrpides,N., Huntemann,M., Han,J., Chen,A., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X. and Woyke,T. (2013) Direct GenBank submission.