ISVasp3

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LT607803 ND Variovorax sp.
Variovorax sp. HW608
DNA section
IS Length : 1087 bp

Ends


IR Length : 19/24

IRL : AAGGGGTATCCAGTTAGCTCCACTCGGCGCACAATGACTGGATGGATGTC
IRR : GCGGCGTATCCGCTTAGCTCCACTGACTGAAATAACTGGATGTCCATCCA

Insertion site


Left flankDirect repeatRight flankDR Length
GAAATACTGTATAAAAATACAGTCAAACTG8

DNA sequence

AAGGGGTATCCAGTTAGCTCCACTCGGCGCACAATGACTGGATGGATGTCCATATCGTAGTACCGGAAGCCGGGAAGGACTACCCCCGAAACTGGAACGA
GTTTCTCGACTGGTTTGGCTCCGAGGAGGCATGTCTGGCCTACCTGGAGCGGCTGCGCTGGGGCGCTGGATTCGTCTGCCCGCGCTGCGGCAGCACGGCC
GAGCCGTACCGTGCCAGCCGCACCCGTCTGATGTGCCGGGACTGCAAATACCAGGGCAGCGTGACCGCCGGCACCATCTTCGAGAAGACGCGAACGCCGC
TGCGCGTGTGGCTGGCTGCGGCCTGGTACCTGACCAACCAGAAGCAAGGCGTCAGCGCCCTGGGCCTGCAGCGCGTGCTCGGCCTGGGCAGCTACGAAAC
CGCCTGGGCCATGCTGCACCGGTTTCGCCGCGCGATGGTGCGCCCGGGTCGTGACCGCCTGCACGGCGTGGTGGAGGTGGATGAAACCTATCTGGCGCTG
ACGGACCGCGAAGCGCCCGCCTCACCGCAGGGGCGCAAGAGCAATACCTCGAAGATTCTGGTCGCGGTGGCCGTCGAGTTGCTGGAGCCCAAGGGGTTCG
GCCGGATTCGCCTGCGCCGCATCCCCAGGGATTCCGCCGCCCATGTCATCCCGTTCGTGCAGGACTCCGTCGAGCCGGGCACCCAGGTGTGCACAGACGG
CTCCGCGGCCTATCGCTCGCTGAAGGAGTTGGGCTACGAGCACCAGCGCACGGTCATGCTGGGCTCGGACGCGCCCGCCCATGTGTCCATGGCCGGCGTG
CACCGGGTGGCGGCGCTGGTCAAGCGCTGGATTCTGGGCACCCACCACGGCTCGGTGCAGCCCGAGCACCTGGACGCCTATCTGGATGAGTTCGTCTTCC
GCTTCAACCGCCGCACATCGAGCTCGCGCGGCATGCTGTTCTACCGGCTCCTGCAGCAGTCCGTGGTCACCGCTCCGGTGACCTACGAGGACGTGGTCCA
GGCAGGTGCGGCCGGGCGCCAAAAGGACTAGTATTGCTGGATGGACATCCAGTTATTTCAGTCAGTGGAGCTAAGCGGATACGCCGC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
990 bp329 aa421031+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDVHIVVPEAGKDYPRNWNEFLDWFGSEEACLAYLERLRWGAGFVCPRCGSTAEPYRASRTRLMCRDCKYQGSVTAGTIFEKTRTPLRVWLAAAWYLTNQ
KQGVSALGLQRVLGLGSYETAWAMLHRFRRAMVRPGRDRLHGVVEVDETYLALTDREAPASPQGRKSNTSKILVAVAVELLEPKGFGRIRLRRIPRDSAA
HVIPFVQDSVEPGTQVCTDGSAAYRSLKELGYEHQRTVMLGSDAPAHVSMAGVHRVAALVKRWILGTHHGSVQPEHLDAYLDEFVFRFNRRTSSSRGMLF
YRLLQQSVVTAPVTYEDVVQAGAAGRQKD

 

Blast result :
Comments
ISVasp3 is 91% aa similar to ISVapa1.
References
1] ISfinder annotation (2017)
2] Varghese,Neha. and Submissions,Spin. (2016) Direct GenBank submission.