ISVasp3
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LT607803 | ND | Variovorax sp. | Variovorax sp. HW608 |
DNA section
IS Length : 1087 bp
Ends
IR Length : 19/24
IRL : AAGGGGTATCCAGTTAGCTCCACTCGGCGCACAATGACTGGATGGATGTC
IRR : GCGGCGTATCCGCTTAGCTCCACTGACTGAAATAACTGGATGTCCATCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAAATACTGT | ATAAAAAT | ACAGTCAAACTG | 8 |
DNA sequence
AAGGGGTATCCAGTTAGCTCCACTCGGCGCACAATGACTGGATGGATGTCCATATCGTAGTACCGGAAGCCGGGAAGGACTACCCCCGAAACTGGAACGA
GTTTCTCGACTGGTTTGGCTCCGAGGAGGCATGTCTGGCCTACCTGGAGCGGCTGCGCTGGGGCGCTGGATTCGTCTGCCCGCGCTGCGGCAGCACGGCC
GAGCCGTACCGTGCCAGCCGCACCCGTCTGATGTGCCGGGACTGCAAATACCAGGGCAGCGTGACCGCCGGCACCATCTTCGAGAAGACGCGAACGCCGC
TGCGCGTGTGGCTGGCTGCGGCCTGGTACCTGACCAACCAGAAGCAAGGCGTCAGCGCCCTGGGCCTGCAGCGCGTGCTCGGCCTGGGCAGCTACGAAAC
CGCCTGGGCCATGCTGCACCGGTTTCGCCGCGCGATGGTGCGCCCGGGTCGTGACCGCCTGCACGGCGTGGTGGAGGTGGATGAAACCTATCTGGCGCTG
ACGGACCGCGAAGCGCCCGCCTCACCGCAGGGGCGCAAGAGCAATACCTCGAAGATTCTGGTCGCGGTGGCCGTCGAGTTGCTGGAGCCCAAGGGGTTCG
GCCGGATTCGCCTGCGCCGCATCCCCAGGGATTCCGCCGCCCATGTCATCCCGTTCGTGCAGGACTCCGTCGAGCCGGGCACCCAGGTGTGCACAGACGG
CTCCGCGGCCTATCGCTCGCTGAAGGAGTTGGGCTACGAGCACCAGCGCACGGTCATGCTGGGCTCGGACGCGCCCGCCCATGTGTCCATGGCCGGCGTG
CACCGGGTGGCGGCGCTGGTCAAGCGCTGGATTCTGGGCACCCACCACGGCTCGGTGCAGCCCGAGCACCTGGACGCCTATCTGGATGAGTTCGTCTTCC
GCTTCAACCGCCGCACATCGAGCTCGCGCGGCATGCTGTTCTACCGGCTCCTGCAGCAGTCCGTGGTCACCGCTCCGGTGACCTACGAGGACGTGGTCCA
GGCAGGTGCGGCCGGGCGCCAAAAGGACTAGTATTGCTGGATGGACATCCAGTTATTTCAGTCAGTGGAGCTAAGCGGATACGCCGC
GTTTCTCGACTGGTTTGGCTCCGAGGAGGCATGTCTGGCCTACCTGGAGCGGCTGCGCTGGGGCGCTGGATTCGTCTGCCCGCGCTGCGGCAGCACGGCC
GAGCCGTACCGTGCCAGCCGCACCCGTCTGATGTGCCGGGACTGCAAATACCAGGGCAGCGTGACCGCCGGCACCATCTTCGAGAAGACGCGAACGCCGC
TGCGCGTGTGGCTGGCTGCGGCCTGGTACCTGACCAACCAGAAGCAAGGCGTCAGCGCCCTGGGCCTGCAGCGCGTGCTCGGCCTGGGCAGCTACGAAAC
CGCCTGGGCCATGCTGCACCGGTTTCGCCGCGCGATGGTGCGCCCGGGTCGTGACCGCCTGCACGGCGTGGTGGAGGTGGATGAAACCTATCTGGCGCTG
ACGGACCGCGAAGCGCCCGCCTCACCGCAGGGGCGCAAGAGCAATACCTCGAAGATTCTGGTCGCGGTGGCCGTCGAGTTGCTGGAGCCCAAGGGGTTCG
GCCGGATTCGCCTGCGCCGCATCCCCAGGGATTCCGCCGCCCATGTCATCCCGTTCGTGCAGGACTCCGTCGAGCCGGGCACCCAGGTGTGCACAGACGG
CTCCGCGGCCTATCGCTCGCTGAAGGAGTTGGGCTACGAGCACCAGCGCACGGTCATGCTGGGCTCGGACGCGCCCGCCCATGTGTCCATGGCCGGCGTG
CACCGGGTGGCGGCGCTGGTCAAGCGCTGGATTCTGGGCACCCACCACGGCTCGGTGCAGCCCGAGCACCTGGACGCCTATCTGGATGAGTTCGTCTTCC
GCTTCAACCGCCGCACATCGAGCTCGCGCGGCATGCTGTTCTACCGGCTCCTGCAGCAGTCCGTGGTCACCGCTCCGGTGACCTACGAGGACGTGGTCCA
GGCAGGTGCGGCCGGGCGCCAAAAGGACTAGTATTGCTGGATGGACATCCAGTTATTTCAGTCAGTGGAGCTAAGCGGATACGCCGC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
990 bp | 329 aa | 42 | 1031 | + | No |
Chemistry : DDE
ORF sequence :
MDVHIVVPEAGKDYPRNWNEFLDWFGSEEACLAYLERLRWGAGFVCPRCGSTAEPYRASRTRLMCRDCKYQGSVTAGTIFEKTRTPLRVWLAAAWYLTNQ
KQGVSALGLQRVLGLGSYETAWAMLHRFRRAMVRPGRDRLHGVVEVDETYLALTDREAPASPQGRKSNTSKILVAVAVELLEPKGFGRIRLRRIPRDSAA
HVIPFVQDSVEPGTQVCTDGSAAYRSLKELGYEHQRTVMLGSDAPAHVSMAGVHRVAALVKRWILGTHHGSVQPEHLDAYLDEFVFRFNRRTSSSRGMLF
YRLLQQSVVTAPVTYEDVVQAGAAGRQKD
KQGVSALGLQRVLGLGSYETAWAMLHRFRRAMVRPGRDRLHGVVEVDETYLALTDREAPASPQGRKSNTSKILVAVAVELLEPKGFGRIRLRRIPRDSAA
HVIPFVQDSVEPGTQVCTDGSAAYRSLKELGYEHQRTVMLGSDAPAHVSMAGVHRVAALVKRWILGTHHGSVQPEHLDAYLDEFVFRFNRRTSSSRGMLF
YRLLQQSVVTAPVTYEDVVQAGAAGRQKD
Blast result :
Comments
ISVasp3 is 91% aa similar to ISVapa1.
References
1] ISfinder annotation (2017)
2] Varghese,Neha. and Submissions,Spin. (2016) Direct GenBank submission.
2] Varghese,Neha. and Submissions,Spin. (2016) Direct GenBank submission.