ISPlba5
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MHYZ01000168 | ND | Planctomycetes bacterium | Planctomycetes bacterium RIFCSPLOWO2_12_FULL_39_13 |
DNA section
IS Length : 1021 bp
Ends
IR Length : 23/26
IRL : GGGGAGTATTCAGTTTACTCCAGTAGTCCCAAGATGTAGTATGTTGGGGT
IRR : TGGGGGTATTCAGTTGACTCCAGTAGCTACTACATATTGTTGCGATTTGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTATTTACATATTAAATAAT | ATTTAAATAAATTAAATAAT | 0 |
DNA sequence
GGGGAGTATTCAGTTTACTCCAGTAGTCCCAAGATGTAGTATGTTGGGGTATGGAAGACTACCCGCGAACACTTGACGAGTTCAATGCAGGATTTGGTTC
AGAAGAAGCATGCCGAGCGTATCTTTTTCATCTGCGCTGGCCCGACGGATTTGTGTGTCCCAAGTGTCAGACCACGACTGCTTGGCGTACGAAGCGAACT
CTTATTGTCTGCGGTTCTTGTGGTTATCAATCATCTGTAACGGCTGGAACGATTTTTGAGGGTACCCACAAGCCGTTGAGGATGTGGTTTCAGGCGAGTT
GGTGGCTGACAAGCCAGAAAACTGGTGCCAGTGCGTTGGGCTTGCAACAGGTTCTCGGCTTGGGTAGCTATTATACTGCCTGGACTTGGTTGCACAAACT
CCGCCGTGCAATGGTACGTCCTGGGCGAGACCGCATTTCGGGTGTGGTGGAAGTTGATGAGTCTTATATCGGAGGCAAAAAGTCCGGAAAGCGGGGCCGC
GGTGCGGCTGGAAAGGCTTTGGTAGTTATTGTTGCACAGATAGAGGGGACCCGCATAGGTCGTATACGGCTTCGATGGGTTCCGGATGCCTCGGCAAAAA
GCTTGGAAGATGCCATTCGGGAAGGCGTAGAGCCTGGGAGTACGGTTCATACCGACGGATGGAAGGGGTACACTGGCTTGAACCGTATCGGCTACATTCA
TGACGTGGTCCGTGAAGAAGCTGATGTTGGTGACAATTTGTTACCCCGGTGCCACAGAGTAGCTTCTCTGCTCAAACGATGGATGATGGGTACGCACCAA
GGAGCTATTAGCCATGAACATCTTGATTACTACCTCGACGAGTATACGTTCCGGTTTAATCGACGAACCAGCCGTCACCGTGGTAAGCTCTTTTACCGAT
TGATCCAACAGGCGGTTGCTGTTGAAGCAACTCCCTACAAAACCATGGTCAAACATGCGAGGGGTCGTAGAGCAAATCGCAACAATATGTAGTAGCTACT
GGAGTCAACTGAATACCCCCA
AGAAGAAGCATGCCGAGCGTATCTTTTTCATCTGCGCTGGCCCGACGGATTTGTGTGTCCCAAGTGTCAGACCACGACTGCTTGGCGTACGAAGCGAACT
CTTATTGTCTGCGGTTCTTGTGGTTATCAATCATCTGTAACGGCTGGAACGATTTTTGAGGGTACCCACAAGCCGTTGAGGATGTGGTTTCAGGCGAGTT
GGTGGCTGACAAGCCAGAAAACTGGTGCCAGTGCGTTGGGCTTGCAACAGGTTCTCGGCTTGGGTAGCTATTATACTGCCTGGACTTGGTTGCACAAACT
CCGCCGTGCAATGGTACGTCCTGGGCGAGACCGCATTTCGGGTGTGGTGGAAGTTGATGAGTCTTATATCGGAGGCAAAAAGTCCGGAAAGCGGGGCCGC
GGTGCGGCTGGAAAGGCTTTGGTAGTTATTGTTGCACAGATAGAGGGGACCCGCATAGGTCGTATACGGCTTCGATGGGTTCCGGATGCCTCGGCAAAAA
GCTTGGAAGATGCCATTCGGGAAGGCGTAGAGCCTGGGAGTACGGTTCATACCGACGGATGGAAGGGGTACACTGGCTTGAACCGTATCGGCTACATTCA
TGACGTGGTCCGTGAAGAAGCTGATGTTGGTGACAATTTGTTACCCCGGTGCCACAGAGTAGCTTCTCTGCTCAAACGATGGATGATGGGTACGCACCAA
GGAGCTATTAGCCATGAACATCTTGATTACTACCTCGACGAGTATACGTTCCGGTTTAATCGACGAACCAGCCGTCACCGTGGTAAGCTCTTTTACCGAT
TGATCCAACAGGCGGTTGCTGTTGAAGCAACTCCCTACAAAACCATGGTCAAACATGCGAGGGGTCGTAGAGCAAATCGCAACAATATGTAGTAGCTACT
GGAGTCAACTGAATACCCCCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
942 bp | 313 aa | 51 | 992 | + | No |
Chemistry : DDE
ORF sequence :
MEDYPRTLDEFNAGFGSEEACRAYLFHLRWPDGFVCPKCQTTTAWRTKRTLIVCGSCGYQSSVTAGTIFEGTHKPLRMWFQASWWLTSQKTGASALGLQQ
VLGLGSYYTAWTWLHKLRRAMVRPGRDRISGVVEVDESYIGGKKSGKRGRGAAGKALVVIVAQIEGTRIGRIRLRWVPDASAKSLEDAIREGVEPGSTVH
TDGWKGYTGLNRIGYIHDVVREEADVGDNLLPRCHRVASLLKRWMMGTHQGAISHEHLDYYLDEYTFRFNRRTSRHRGKLFYRLIQQAVAVEATPYKTMV
KHARGRRANRNNM
VLGLGSYYTAWTWLHKLRRAMVRPGRDRISGVVEVDESYIGGKKSGKRGRGAAGKALVVIVAQIEGTRIGRIRLRWVPDASAKSLEDAIREGVEPGSTVH
TDGWKGYTGLNRIGYIHDVVREEADVGDNLLPRCHRVASLLKRWMMGTHQGAISHEHLDYYLDEYTFRFNRRTSRHRGKLFYRLIQQAVAVEATPYKTMV
KHARGRRANRNNM
Blast result :
Comments
ISPlba5 is 82% aa similar to ISPlba2.
References
1] ISfinder annotation (2017)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.