ISPlba5

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MHYZ01000168 ND Planctomycetes bacterium
Planctomycetes bacterium RIFCSPLOWO2_12_FULL_39_13
DNA section
IS Length : 1021 bp

Ends


IR Length : 23/26

IRL : GGGGAGTATTCAGTTTACTCCAGTAGTCCCAAGATGTAGTATGTTGGGGT
IRR : TGGGGGTATTCAGTTGACTCCAGTAGCTACTACATATTGTTGCGATTTGC

Insertion site


Left flankDirect repeatRight flankDR Length
TTATTTACATATTAAATAATATTTAAATAAATTAAATAAT0

DNA sequence

GGGGAGTATTCAGTTTACTCCAGTAGTCCCAAGATGTAGTATGTTGGGGTATGGAAGACTACCCGCGAACACTTGACGAGTTCAATGCAGGATTTGGTTC
AGAAGAAGCATGCCGAGCGTATCTTTTTCATCTGCGCTGGCCCGACGGATTTGTGTGTCCCAAGTGTCAGACCACGACTGCTTGGCGTACGAAGCGAACT
CTTATTGTCTGCGGTTCTTGTGGTTATCAATCATCTGTAACGGCTGGAACGATTTTTGAGGGTACCCACAAGCCGTTGAGGATGTGGTTTCAGGCGAGTT
GGTGGCTGACAAGCCAGAAAACTGGTGCCAGTGCGTTGGGCTTGCAACAGGTTCTCGGCTTGGGTAGCTATTATACTGCCTGGACTTGGTTGCACAAACT
CCGCCGTGCAATGGTACGTCCTGGGCGAGACCGCATTTCGGGTGTGGTGGAAGTTGATGAGTCTTATATCGGAGGCAAAAAGTCCGGAAAGCGGGGCCGC
GGTGCGGCTGGAAAGGCTTTGGTAGTTATTGTTGCACAGATAGAGGGGACCCGCATAGGTCGTATACGGCTTCGATGGGTTCCGGATGCCTCGGCAAAAA
GCTTGGAAGATGCCATTCGGGAAGGCGTAGAGCCTGGGAGTACGGTTCATACCGACGGATGGAAGGGGTACACTGGCTTGAACCGTATCGGCTACATTCA
TGACGTGGTCCGTGAAGAAGCTGATGTTGGTGACAATTTGTTACCCCGGTGCCACAGAGTAGCTTCTCTGCTCAAACGATGGATGATGGGTACGCACCAA
GGAGCTATTAGCCATGAACATCTTGATTACTACCTCGACGAGTATACGTTCCGGTTTAATCGACGAACCAGCCGTCACCGTGGTAAGCTCTTTTACCGAT
TGATCCAACAGGCGGTTGCTGTTGAAGCAACTCCCTACAAAACCATGGTCAAACATGCGAGGGGTCGTAGAGCAAATCGCAACAATATGTAGTAGCTACT
GGAGTCAACTGAATACCCCCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
942 bp313 aa51992+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEDYPRTLDEFNAGFGSEEACRAYLFHLRWPDGFVCPKCQTTTAWRTKRTLIVCGSCGYQSSVTAGTIFEGTHKPLRMWFQASWWLTSQKTGASALGLQQ
VLGLGSYYTAWTWLHKLRRAMVRPGRDRISGVVEVDESYIGGKKSGKRGRGAAGKALVVIVAQIEGTRIGRIRLRWVPDASAKSLEDAIREGVEPGSTVH
TDGWKGYTGLNRIGYIHDVVREEADVGDNLLPRCHRVASLLKRWMMGTHQGAISHEHLDYYLDEYTFRFNRRTSRHRGKLFYRLIQQAVAVEATPYKTMV
KHARGRRANRNNM

 

Blast result :
Comments
ISPlba5 is 82% aa similar to ISPlba2.
References
1] ISfinder annotation (2017)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.