ISVers1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ARAS01000004 ND Verrucomicrobium sp.
Verrucomicrobium sp. 3C
DNA section
IS Length : 993 bp

Ends


IR Length : 25

IRL : TATGCTTATCCCGTTGACGCCCCTAGCCCTGCGAGCATGATATAGTGGTG
IRR : TATGCTTATCCCGTTGACGCCCCTAACGTCATCTTCTCGTAGTTCACGGG

Insertion site


Left flankDirect repeatRight flankDR Length
CGTCTCAGAAAATGGAAAATTGAGTCATTCGCGCCCATGG0
ATCCCGATATAATGTCACGAGATAAGCATATTATGCTAAA0

DNA sequence

TATGCTTATCCCGTTGACGCCCCTAGCCCTGCGAGCATGATATAGTGGTGGCCCGGCCCGATTTTCCCAAGACCTTGAAAGAGTTTCGTGAACGTTTTTC
CCAGGAAGACGCCTGCTTTGAGTATCTGGCCAGCAGTCGCTGGCCGGAAGGCTTTGTCTGTCCGCGGTGCGGTGGTCAAGCCTGCTGGATTAAGACCAGA
CGCTTTGAGCACAAGTGTCAGAGTTGCGGCCAGCAAATCTCCGCGACGGCGGGCACCCTCATGCATGGCTCCCACTTCCCTTTGCGCGAATGGTTTTGGG
CCGCGTACCTGGTGGCCACGCACACACCCGGCATGAGCGCGACGCAACTGCAACGGCAAATGGGGTGCAGCTACAAAACCGCTTGGTATCTGTTGCACCG
GTTGCGCCGCGCCATGGTCAACGAGACCCGCTCCCGCTTGAGCGGACGAGTCGAGACCGACGAGGTCATCATTGGAGGTCCGGTCAGAGGTAAAAGAGGC
CGGGGCGTGACGGCGGCGCAACACGGCACCCTGGTCTTTGGCGCGGTGGAAGTGATCGCTTATACTAACAAGCATGGCGGCTACATGGAAAAAGCCGGCA
GGTTGCGCCTGACTGTGGCTCCCCGAGCCGATGCGGGTTCGATCCGCCGCTTTCTGGAGAAAAACGTGGAGCCGGGCACGGAGATTGGCACCGATCAATG
GAAGGGGTACTCGACGACAGCCCTCGCAGGCTATCGCCACGAGCACCAACATCCCGAAACCCATGCGCTCCATATCCACCGGGCTTTCGGCAACCTCAAA
ACCTGGCTTAATGGCACCCATCATGGCGTTGATCCCAAATATCTGCAAAATTATCTCGATGAATGCGTGTTTCGCTTCAACCGGCGCAAGACTCCCATGG
CTGCGTTCCAGACATTGCTCGGGCTGGCCACACGATCAAAATCCCCGTGAACTACGAGAAGATGACGTTAGGGGCGTCAACGGGATAAGCATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
906 bp301 aa45950+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVARPDFPKTLKEFRERFSQEDACFEYLASSRWPEGFVCPRCGGQACWIKTRRFEHKCQSCGQQISATAGTLMHGSHFPLREWFWAAYLVATHTPGMSAT
QLQRQMGCSYKTAWYLLHRLRRAMVNETRSRLSGRVETDEVIIGGPVRGKRGRGVTAAQHGTLVFGAVEVIAYTNKHGGYMEKAGRLRLTVAPRADAGSI
RRFLEKNVEPGTEIGTDQWKGYSTTALAGYRHEHQHPETHALHIHRAFGNLKTWLNGTHHGVDPKYLQNYLDECVFRFNRRKTPMAAFQTLLGLATRSKS
P

 

Blast result :
Comments
ISVers1 is 60% aa similar to ISEba1.
References
1] ISfinder annotation (2017)
2] Kalyuzhnaya,M.G., Huntemann,M., Han,J., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X. and Woyke,T. (2013) Direct GenBank submission.