ISVers1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ARAS01000004 | ND | Verrucomicrobium sp. | Verrucomicrobium sp. 3C |
DNA section
IS Length : 993 bp
Ends
IR Length : 25
IRL : TATGCTTATCCCGTTGACGCCCCTAGCCCTGCGAGCATGATATAGTGGTG
IRR : TATGCTTATCCCGTTGACGCCCCTAACGTCATCTTCTCGTAGTTCACGGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGTCTCAGAAAATGGAAAAT | TGAGTCATTCGCGCCCATGG | 0 | |
ATCCCGATATAATGTCACGA | GATAAGCATATTATGCTAAA | 0 |
DNA sequence
TATGCTTATCCCGTTGACGCCCCTAGCCCTGCGAGCATGATATAGTGGTGGCCCGGCCCGATTTTCCCAAGACCTTGAAAGAGTTTCGTGAACGTTTTTC
CCAGGAAGACGCCTGCTTTGAGTATCTGGCCAGCAGTCGCTGGCCGGAAGGCTTTGTCTGTCCGCGGTGCGGTGGTCAAGCCTGCTGGATTAAGACCAGA
CGCTTTGAGCACAAGTGTCAGAGTTGCGGCCAGCAAATCTCCGCGACGGCGGGCACCCTCATGCATGGCTCCCACTTCCCTTTGCGCGAATGGTTTTGGG
CCGCGTACCTGGTGGCCACGCACACACCCGGCATGAGCGCGACGCAACTGCAACGGCAAATGGGGTGCAGCTACAAAACCGCTTGGTATCTGTTGCACCG
GTTGCGCCGCGCCATGGTCAACGAGACCCGCTCCCGCTTGAGCGGACGAGTCGAGACCGACGAGGTCATCATTGGAGGTCCGGTCAGAGGTAAAAGAGGC
CGGGGCGTGACGGCGGCGCAACACGGCACCCTGGTCTTTGGCGCGGTGGAAGTGATCGCTTATACTAACAAGCATGGCGGCTACATGGAAAAAGCCGGCA
GGTTGCGCCTGACTGTGGCTCCCCGAGCCGATGCGGGTTCGATCCGCCGCTTTCTGGAGAAAAACGTGGAGCCGGGCACGGAGATTGGCACCGATCAATG
GAAGGGGTACTCGACGACAGCCCTCGCAGGCTATCGCCACGAGCACCAACATCCCGAAACCCATGCGCTCCATATCCACCGGGCTTTCGGCAACCTCAAA
ACCTGGCTTAATGGCACCCATCATGGCGTTGATCCCAAATATCTGCAAAATTATCTCGATGAATGCGTGTTTCGCTTCAACCGGCGCAAGACTCCCATGG
CTGCGTTCCAGACATTGCTCGGGCTGGCCACACGATCAAAATCCCCGTGAACTACGAGAAGATGACGTTAGGGGCGTCAACGGGATAAGCATA
CCAGGAAGACGCCTGCTTTGAGTATCTGGCCAGCAGTCGCTGGCCGGAAGGCTTTGTCTGTCCGCGGTGCGGTGGTCAAGCCTGCTGGATTAAGACCAGA
CGCTTTGAGCACAAGTGTCAGAGTTGCGGCCAGCAAATCTCCGCGACGGCGGGCACCCTCATGCATGGCTCCCACTTCCCTTTGCGCGAATGGTTTTGGG
CCGCGTACCTGGTGGCCACGCACACACCCGGCATGAGCGCGACGCAACTGCAACGGCAAATGGGGTGCAGCTACAAAACCGCTTGGTATCTGTTGCACCG
GTTGCGCCGCGCCATGGTCAACGAGACCCGCTCCCGCTTGAGCGGACGAGTCGAGACCGACGAGGTCATCATTGGAGGTCCGGTCAGAGGTAAAAGAGGC
CGGGGCGTGACGGCGGCGCAACACGGCACCCTGGTCTTTGGCGCGGTGGAAGTGATCGCTTATACTAACAAGCATGGCGGCTACATGGAAAAAGCCGGCA
GGTTGCGCCTGACTGTGGCTCCCCGAGCCGATGCGGGTTCGATCCGCCGCTTTCTGGAGAAAAACGTGGAGCCGGGCACGGAGATTGGCACCGATCAATG
GAAGGGGTACTCGACGACAGCCCTCGCAGGCTATCGCCACGAGCACCAACATCCCGAAACCCATGCGCTCCATATCCACCGGGCTTTCGGCAACCTCAAA
ACCTGGCTTAATGGCACCCATCATGGCGTTGATCCCAAATATCTGCAAAATTATCTCGATGAATGCGTGTTTCGCTTCAACCGGCGCAAGACTCCCATGG
CTGCGTTCCAGACATTGCTCGGGCTGGCCACACGATCAAAATCCCCGTGAACTACGAGAAGATGACGTTAGGGGCGTCAACGGGATAAGCATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
906 bp | 301 aa | 45 | 950 | + | No |
Chemistry : DDE
ORF sequence :
MVARPDFPKTLKEFRERFSQEDACFEYLASSRWPEGFVCPRCGGQACWIKTRRFEHKCQSCGQQISATAGTLMHGSHFPLREWFWAAYLVATHTPGMSAT
QLQRQMGCSYKTAWYLLHRLRRAMVNETRSRLSGRVETDEVIIGGPVRGKRGRGVTAAQHGTLVFGAVEVIAYTNKHGGYMEKAGRLRLTVAPRADAGSI
RRFLEKNVEPGTEIGTDQWKGYSTTALAGYRHEHQHPETHALHIHRAFGNLKTWLNGTHHGVDPKYLQNYLDECVFRFNRRKTPMAAFQTLLGLATRSKS
P
QLQRQMGCSYKTAWYLLHRLRRAMVNETRSRLSGRVETDEVIIGGPVRGKRGRGVTAAQHGTLVFGAVEVIAYTNKHGGYMEKAGRLRLTVAPRADAGSI
RRFLEKNVEPGTEIGTDQWKGYSTTALAGYRHEHQHPETHALHIHRAFGNLKTWLNGTHHGVDPKYLQNYLDECVFRFNRRKTPMAAFQTLLGLATRSKS
P
Blast result :
Comments
ISVers1 is 60% aa similar to ISEba1.
References
1] ISfinder annotation (2017)
2] Kalyuzhnaya,M.G., Huntemann,M., Han,J., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X. and Woyke,T. (2013) Direct GenBank submission.
2] Kalyuzhnaya,M.G., Huntemann,M., Han,J., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X. and Woyke,T. (2013) Direct GenBank submission.