ISDebc1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LDXO01000001 | ND | Deltaproteobacteria bacterium | Deltaproteobacteria bacterium CSP1-8 |
DNA section
IS Length : 1009 bp
Ends
IR Length : 28/29
IRL : GAGGGGTATCCACTTTACTCCAGTACCCACAATATGTAGTGTTACTACCC
IRR : GAGGGGTATCCACTTTACTCCAGTGACCCCTACATATTGTGGTCCGGACC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGAGAACGAT | TGCCCGCA | AACCGGTGTT | 8 |
DNA sequence
GAGGGGTATCCACTTTACTCCAGTACCCACAATATGTAGTGTTACTACCCATGGAGGACTATCCGAGGACCCTTGCCGAATTCGAGAAACGGTTTGCCAC
GGAGGCGGCGTGCCGCGCCTACTTGATCCACTGTCGCTGGCCGTCGGGGTTTCGGTGCTCGCGGTGCGCCACCGACGATGGATGGGAAACCAGCCGGGGC
TTGCGGATGTGTCCCCAGTGCGGACACCAGACCTCCGTGACAGCGGGGACGATTTTCCACCGGAGTCACCTTCCGTTGCGGACCTGGTTCCGGGCCATGT
GGTGGGTCACCAACCAAAAGCACGGGGTCAGCGCTCTGGGATTGCAGCGCCTGCTCGGGTTGGGGAGCTACGAGACAGCTTGGTCCTGTCTCCAAAAACT
GAGGCGTGCGATGGTGCGGCCTGACCGGGACCGGCTGGGCGGCGAGGTGGAGGTGGATGAAACATACCTTGGCGGCGTCCAGGCTGGTGGAGGCCGTAGA
CACTTGGGAAACAAGGCCTTGTTGGCCATCGCCGCGCAGGTCGACGGCCAAGGGATCGGCCGGATTCGGATGCGTCGGATTCCGGATGCCTCCTCCAAGA
CACTCCTCTCGTTCGTCAAGATGGCGGTCGAACCGGGGGCCGTGGTCGTCACCGACGGATGGGGTCCTTACGACGGGTTGCAGAAGGAGGGCTTCACGCA
CAACCCCCGGGTGATCAGCGGGAGCGGAAAAACGGCATCGACTCTTCTGCCGCGGGTGCATCGGGTCGCGTCTTTGTTGAAACGGTGGCTGTTGGGAACC
CATCAGGGTGCTGTATCCCGCAAGCAACTGGAATATTACCTCGACGAGTTTACGTTTCGGTTCAACCGCAGGACATCCAGGCATCGCGGTAAGCTGTTCA
CACGGCTTATTGAACAGGCAGTCGCAATTGGACCTACGCCTTACGAAAAACTGATCGTCGGTCCGGACCACAATATGTAGGGGTCACTGGAGTAAAGTGG
ATACCCCTC
GGAGGCGGCGTGCCGCGCCTACTTGATCCACTGTCGCTGGCCGTCGGGGTTTCGGTGCTCGCGGTGCGCCACCGACGATGGATGGGAAACCAGCCGGGGC
TTGCGGATGTGTCCCCAGTGCGGACACCAGACCTCCGTGACAGCGGGGACGATTTTCCACCGGAGTCACCTTCCGTTGCGGACCTGGTTCCGGGCCATGT
GGTGGGTCACCAACCAAAAGCACGGGGTCAGCGCTCTGGGATTGCAGCGCCTGCTCGGGTTGGGGAGCTACGAGACAGCTTGGTCCTGTCTCCAAAAACT
GAGGCGTGCGATGGTGCGGCCTGACCGGGACCGGCTGGGCGGCGAGGTGGAGGTGGATGAAACATACCTTGGCGGCGTCCAGGCTGGTGGAGGCCGTAGA
CACTTGGGAAACAAGGCCTTGTTGGCCATCGCCGCGCAGGTCGACGGCCAAGGGATCGGCCGGATTCGGATGCGTCGGATTCCGGATGCCTCCTCCAAGA
CACTCCTCTCGTTCGTCAAGATGGCGGTCGAACCGGGGGCCGTGGTCGTCACCGACGGATGGGGTCCTTACGACGGGTTGCAGAAGGAGGGCTTCACGCA
CAACCCCCGGGTGATCAGCGGGAGCGGAAAAACGGCATCGACTCTTCTGCCGCGGGTGCATCGGGTCGCGTCTTTGTTGAAACGGTGGCTGTTGGGAACC
CATCAGGGTGCTGTATCCCGCAAGCAACTGGAATATTACCTCGACGAGTTTACGTTTCGGTTCAACCGCAGGACATCCAGGCATCGCGGTAAGCTGTTCA
CACGGCTTATTGAACAGGCAGTCGCAATTGGACCTACGCCTTACGAAAAACTGATCGTCGGTCCGGACCACAATATGTAGGGGTCACTGGAGTAAAGTGG
ATACCCCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
930 bp | 309 aa | 51 | 980 | + | No |
Chemistry : DDE
ORF sequence :
MEDYPRTLAEFEKRFATEAACRAYLIHCRWPSGFRCSRCATDDGWETSRGLRMCPQCGHQTSVTAGTIFHRSHLPLRTWFRAMWWVTNQKHGVSALGLQR
LLGLGSYETAWSCLQKLRRAMVRPDRDRLGGEVEVDETYLGGVQAGGGRRHLGNKALLAIAAQVDGQGIGRIRMRRIPDASSKTLLSFVKMAVEPGAVVV
TDGWGPYDGLQKEGFTHNPRVISGSGKTASTLLPRVHRVASLLKRWLLGTHQGAVSRKQLEYYLDEFTFRFNRRTSRHRGKLFTRLIEQAVAIGPTPYEK
LIVGPDHNM
LLGLGSYETAWSCLQKLRRAMVRPDRDRLGGEVEVDETYLGGVQAGGGRRHLGNKALLAIAAQVDGQGIGRIRMRRIPDASSKTLLSFVKMAVEPGAVVV
TDGWGPYDGLQKEGFTHNPRVISGSGKTASTLLPRVHRVASLLKRWLLGTHQGAVSRKQLEYYLDEFTFRFNRRTSRHRGKLFTRLIEQAVAIGPTPYEK
LIVGPDHNM
Blast result :
Comments
ISDebc1 is 74% aa similar to ISUnb3.
References
1] ISfinder annotation (2017)
2] Hug,L.A., Thomas,B.C., Sharon,I., Brown,C.T., Sharma,R., Hettich,R.L., Wilkins,M.J., Williams,K.H., Singh,A. and Banfield,J.F. (2015) Direct GenBank submission.
2] Hug,L.A., Thomas,B.C., Sharon,I., Brown,C.T., Sharma,R., Hettich,R.L., Wilkins,M.J., Williams,K.H., Singh,A. and Banfield,J.F. (2015) Direct GenBank submission.