ISDebc1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LDXO01000001 ND Deltaproteobacteria bacterium
Deltaproteobacteria bacterium CSP1-8
DNA section
IS Length : 1009 bp

Ends


IR Length : 28/29

IRL : GAGGGGTATCCACTTTACTCCAGTACCCACAATATGTAGTGTTACTACCC
IRR : GAGGGGTATCCACTTTACTCCAGTGACCCCTACATATTGTGGTCCGGACC

Insertion site


Left flankDirect repeatRight flankDR Length
CGAGAACGATTGCCCGCAAACCGGTGTT8

DNA sequence

GAGGGGTATCCACTTTACTCCAGTACCCACAATATGTAGTGTTACTACCCATGGAGGACTATCCGAGGACCCTTGCCGAATTCGAGAAACGGTTTGCCAC
GGAGGCGGCGTGCCGCGCCTACTTGATCCACTGTCGCTGGCCGTCGGGGTTTCGGTGCTCGCGGTGCGCCACCGACGATGGATGGGAAACCAGCCGGGGC
TTGCGGATGTGTCCCCAGTGCGGACACCAGACCTCCGTGACAGCGGGGACGATTTTCCACCGGAGTCACCTTCCGTTGCGGACCTGGTTCCGGGCCATGT
GGTGGGTCACCAACCAAAAGCACGGGGTCAGCGCTCTGGGATTGCAGCGCCTGCTCGGGTTGGGGAGCTACGAGACAGCTTGGTCCTGTCTCCAAAAACT
GAGGCGTGCGATGGTGCGGCCTGACCGGGACCGGCTGGGCGGCGAGGTGGAGGTGGATGAAACATACCTTGGCGGCGTCCAGGCTGGTGGAGGCCGTAGA
CACTTGGGAAACAAGGCCTTGTTGGCCATCGCCGCGCAGGTCGACGGCCAAGGGATCGGCCGGATTCGGATGCGTCGGATTCCGGATGCCTCCTCCAAGA
CACTCCTCTCGTTCGTCAAGATGGCGGTCGAACCGGGGGCCGTGGTCGTCACCGACGGATGGGGTCCTTACGACGGGTTGCAGAAGGAGGGCTTCACGCA
CAACCCCCGGGTGATCAGCGGGAGCGGAAAAACGGCATCGACTCTTCTGCCGCGGGTGCATCGGGTCGCGTCTTTGTTGAAACGGTGGCTGTTGGGAACC
CATCAGGGTGCTGTATCCCGCAAGCAACTGGAATATTACCTCGACGAGTTTACGTTTCGGTTCAACCGCAGGACATCCAGGCATCGCGGTAAGCTGTTCA
CACGGCTTATTGAACAGGCAGTCGCAATTGGACCTACGCCTTACGAAAAACTGATCGTCGGTCCGGACCACAATATGTAGGGGTCACTGGAGTAAAGTGG
ATACCCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
930 bp309 aa51980+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEDYPRTLAEFEKRFATEAACRAYLIHCRWPSGFRCSRCATDDGWETSRGLRMCPQCGHQTSVTAGTIFHRSHLPLRTWFRAMWWVTNQKHGVSALGLQR
LLGLGSYETAWSCLQKLRRAMVRPDRDRLGGEVEVDETYLGGVQAGGGRRHLGNKALLAIAAQVDGQGIGRIRMRRIPDASSKTLLSFVKMAVEPGAVVV
TDGWGPYDGLQKEGFTHNPRVISGSGKTASTLLPRVHRVASLLKRWLLGTHQGAVSRKQLEYYLDEFTFRFNRRTSRHRGKLFTRLIEQAVAIGPTPYEK
LIVGPDHNM

 

Blast result :
Comments
ISDebc1 is 74% aa similar to ISUnb3.
References
1] ISfinder annotation (2017)
2] Hug,L.A., Thomas,B.C., Sharon,I., Brown,C.T., Sharma,R., Hettich,R.L., Wilkins,M.J., Williams,K.H., Singh,A. and Banfield,J.F. (2015) Direct GenBank submission.