ISGlsu1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ATWH01000002 | ND | Glaciibacter superstes | Glaciibacter superstes DSM 21135 |
DNA section
IS Length : 1006 bp
Ends
IR Length : 22/24
IRL : CATGCTTATCCGGTTACGTCAGGTAACATGGGCAAATGCCGCGTCCCGAC
IRR : CATGCTTATCCGGTTAGATCAGGTCGTGATTGCGCGCCCGAACCGGTCGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGCGTTCATTTGGTGTTTCGCAGCT | ACGCAGCTATTGATCCACACCTACTCGCG | 0 |
DNA sequence
CATGCTTATCCGGTTACGTCAGGTAACATGGGCAAATGCCGCGTCCCGACTTTCCGCGCACGATCGTGGAGTTCCAGCAGCGCGTCCCTGATGATCATGC
ATGTACGGAGTATCTGTTCCAGTCGCGCTGGCCTGAGGGGTTCGTCTGTCCGCGCTGTGGCCGTGGCCAGGCGTGGCCGGTGGCCAAGCGTCGGGTGGTG
TGGGAGTGCGCGGCCTGCCACCGGCAGACCTCGGTGACGGCGGGCACGGTGCTGCATAAGACGCACACACCGTTGCACGTGTGGTTCTGGGCGGCGTATC
TGATGAGCACGCCGACGCCGGGGGTTTCGGCGCTGCAGTTGCAGCGTCAGCTCGGGCTGAGTCGGTACGAGACGGCGTGGACGATGCTGCACAAGCTGCG
TCGGGCGATGGTCAACCCAGAACGTGAGCATCTGACCGAGGAGGTAGAAGTCGATGAGTGTTTCGTGGGCGGCCACGAAGCTGGCCTGCGCGGTGGGCGT
GCGAGAGGCGAGAAAGCCCTTGTAGCAGTGGGAGTTGAGGTCCGCGGCGCCGGCAGTGGTCGAGTCCGCATGACCGTCATCGACGACGCGAGCGCCGTCA
CGCTCACCGCCTTCGTGCGCAAGAACGTCACGGCTGGGGCCATCGTGCACACCGACGGGTGGAACAGCTACCGGTCGCTGAGCACGCTCGGCTACGACCA
CCACCCGCGCAACCAGAGCGCCGCACGTCGTCGAGGCGAGGATCCGGATGAGATCCTGCCCCGCGTGCACCGGACGATCTCCAACCTCAAAAGCTGGCTG
CAAGGCACCCACCGCGGCGTCTCCGGCGAGCACCTGCAGGTCTACCTCGACGAGTACACGTTCCGGTTCGGGCGCCGCCGCACCCCGATGGCCGCCTTCC
AGACTCTCCTGGGCTTGCAGTCCCAGCAGCAGCCCACCACCTACCGCCAGATAGTCGCGACCGGTTCGGGCGCGCAATCACGACCTGATCTAACCGGATA
AGCATG
ATGTACGGAGTATCTGTTCCAGTCGCGCTGGCCTGAGGGGTTCGTCTGTCCGCGCTGTGGCCGTGGCCAGGCGTGGCCGGTGGCCAAGCGTCGGGTGGTG
TGGGAGTGCGCGGCCTGCCACCGGCAGACCTCGGTGACGGCGGGCACGGTGCTGCATAAGACGCACACACCGTTGCACGTGTGGTTCTGGGCGGCGTATC
TGATGAGCACGCCGACGCCGGGGGTTTCGGCGCTGCAGTTGCAGCGTCAGCTCGGGCTGAGTCGGTACGAGACGGCGTGGACGATGCTGCACAAGCTGCG
TCGGGCGATGGTCAACCCAGAACGTGAGCATCTGACCGAGGAGGTAGAAGTCGATGAGTGTTTCGTGGGCGGCCACGAAGCTGGCCTGCGCGGTGGGCGT
GCGAGAGGCGAGAAAGCCCTTGTAGCAGTGGGAGTTGAGGTCCGCGGCGCCGGCAGTGGTCGAGTCCGCATGACCGTCATCGACGACGCGAGCGCCGTCA
CGCTCACCGCCTTCGTGCGCAAGAACGTCACGGCTGGGGCCATCGTGCACACCGACGGGTGGAACAGCTACCGGTCGCTGAGCACGCTCGGCTACGACCA
CCACCCGCGCAACCAGAGCGCCGCACGTCGTCGAGGCGAGGATCCGGATGAGATCCTGCCCCGCGTGCACCGGACGATCTCCAACCTCAAAAGCTGGCTG
CAAGGCACCCACCGCGGCGTCTCCGGCGAGCACCTGCAGGTCTACCTCGACGAGTACACGTTCCGGTTCGGGCGCCGCCGCACCCCGATGGCCGCCTTCC
AGACTCTCCTGGGCTTGCAGTCCCAGCAGCAGCCCACCACCTACCGCCAGATAGTCGCGACCGGTTCGGGCGCGCAATCACGACCTGATCTAACCGGATA
AGCATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
966 bp | 321 aa | 36 | 1001 | + | No |
Chemistry : DDE
ORF sequence :
MPRPDFPRTIVEFQQRVPDDHACTEYLFQSRWPEGFVCPRCGRGQAWPVAKRRVVWECAACHRQTSVTAGTVLHKTHTPLHVWFWAAYLMSTPTPGVSAL
QLQRQLGLSRYETAWTMLHKLRRAMVNPEREHLTEEVEVDECFVGGHEAGLRGGRARGEKALVAVGVEVRGAGSGRVRMTVIDDASAVTLTAFVRKNVTA
GAIVHTDGWNSYRSLSTLGYDHHPRNQSAARRRGEDPDEILPRVHRTISNLKSWLQGTHRGVSGEHLQVYLDEYTFRFGRRRTPMAAFQTLLGLQSQQQP
TTYRQIVATGSGAQSRPDLTG
QLQRQLGLSRYETAWTMLHKLRRAMVNPEREHLTEEVEVDECFVGGHEAGLRGGRARGEKALVAVGVEVRGAGSGRVRMTVIDDASAVTLTAFVRKNVTA
GAIVHTDGWNSYRSLSTLGYDHHPRNQSAARRRGEDPDEILPRVHRTISNLKSWLQGTHRGVSGEHLQVYLDEYTFRFGRRRTPMAAFQTLLGLQSQQQP
TTYRQIVATGSGAQSRPDLTG
Blast result :
Comments
ISGlsu1 is 88% aa similar to ISRop3.
References
1] ISfinder annotation (2017)
2] Kyrpides,N., Huntemann,M., Han,J., Chen,A., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X. and Woyke,T. (2013) Direct GenBank submission.
2] Kyrpides,N., Huntemann,M., Han,J., Chen,A., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X. and Woyke,T. (2013) Direct GenBank submission.