ISGlsu1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ATWH01000002 ND Glaciibacter superstes
Glaciibacter superstes DSM 21135
DNA section
IS Length : 1006 bp

Ends


IR Length : 22/24

IRL : CATGCTTATCCGGTTACGTCAGGTAACATGGGCAAATGCCGCGTCCCGAC
IRR : CATGCTTATCCGGTTAGATCAGGTCGTGATTGCGCGCCCGAACCGGTCGC

Insertion site


Left flankDirect repeatRight flankDR Length
CGCGTTCATTTGGTGTTTCGCAGCTACGCAGCTATTGATCCACACCTACTCGCG0

DNA sequence

CATGCTTATCCGGTTACGTCAGGTAACATGGGCAAATGCCGCGTCCCGACTTTCCGCGCACGATCGTGGAGTTCCAGCAGCGCGTCCCTGATGATCATGC
ATGTACGGAGTATCTGTTCCAGTCGCGCTGGCCTGAGGGGTTCGTCTGTCCGCGCTGTGGCCGTGGCCAGGCGTGGCCGGTGGCCAAGCGTCGGGTGGTG
TGGGAGTGCGCGGCCTGCCACCGGCAGACCTCGGTGACGGCGGGCACGGTGCTGCATAAGACGCACACACCGTTGCACGTGTGGTTCTGGGCGGCGTATC
TGATGAGCACGCCGACGCCGGGGGTTTCGGCGCTGCAGTTGCAGCGTCAGCTCGGGCTGAGTCGGTACGAGACGGCGTGGACGATGCTGCACAAGCTGCG
TCGGGCGATGGTCAACCCAGAACGTGAGCATCTGACCGAGGAGGTAGAAGTCGATGAGTGTTTCGTGGGCGGCCACGAAGCTGGCCTGCGCGGTGGGCGT
GCGAGAGGCGAGAAAGCCCTTGTAGCAGTGGGAGTTGAGGTCCGCGGCGCCGGCAGTGGTCGAGTCCGCATGACCGTCATCGACGACGCGAGCGCCGTCA
CGCTCACCGCCTTCGTGCGCAAGAACGTCACGGCTGGGGCCATCGTGCACACCGACGGGTGGAACAGCTACCGGTCGCTGAGCACGCTCGGCTACGACCA
CCACCCGCGCAACCAGAGCGCCGCACGTCGTCGAGGCGAGGATCCGGATGAGATCCTGCCCCGCGTGCACCGGACGATCTCCAACCTCAAAAGCTGGCTG
CAAGGCACCCACCGCGGCGTCTCCGGCGAGCACCTGCAGGTCTACCTCGACGAGTACACGTTCCGGTTCGGGCGCCGCCGCACCCCGATGGCCGCCTTCC
AGACTCTCCTGGGCTTGCAGTCCCAGCAGCAGCCCACCACCTACCGCCAGATAGTCGCGACCGGTTCGGGCGCGCAATCACGACCTGATCTAACCGGATA
AGCATG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
966 bp321 aa361001+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPRPDFPRTIVEFQQRVPDDHACTEYLFQSRWPEGFVCPRCGRGQAWPVAKRRVVWECAACHRQTSVTAGTVLHKTHTPLHVWFWAAYLMSTPTPGVSAL
QLQRQLGLSRYETAWTMLHKLRRAMVNPEREHLTEEVEVDECFVGGHEAGLRGGRARGEKALVAVGVEVRGAGSGRVRMTVIDDASAVTLTAFVRKNVTA
GAIVHTDGWNSYRSLSTLGYDHHPRNQSAARRRGEDPDEILPRVHRTISNLKSWLQGTHRGVSGEHLQVYLDEYTFRFGRRRTPMAAFQTLLGLQSQQQP
TTYRQIVATGSGAQSRPDLTG

 

Blast result :
Comments
ISGlsu1 is 88% aa similar to ISRop3.
References
1] ISfinder annotation (2017)
2] Kyrpides,N., Huntemann,M., Han,J., Chen,A., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X. and Woyke,T. (2013) Direct GenBank submission.