ISBfu1

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AB025195 ND Brevibacterium fuscum
Brevibacterium fuscum var. dextranlyticum 0407
DNA section
IS Length : 553 bp

Ends


IR Length :

IRL : TGTATTGACCACAGAGGTTAGTGACGGTCGGCGTGGTTTGGTGACATGAA
IRR : --------------------------------------------------

Insertion site


Left flankDirect repeatRight flankDR Length
GTCACCTCGAGCTAGGNNNNNNNNNN6

DNA sequence

TGTATTGACCACAGAGGTTAGTGACGGTCGGCGTGGTTTGGTGACATGAAGAAGACCTCCGGGTGAAGTGGGGCTTGTCTAGAGCATCCACTAACCAGGA
GGTCTTCAATGTCCCACCCTAACGCCCTACTGACACCTCGCGGGAGGTTGTTACTGGCCCAGTGTGTTGTCGATGATGGTTGGCCGCTGCGCCGGGCTGC
GGACGTCTTCCAGGTCTCTGCCACGACCGCTGCACGCTGGTCCTCCCGGTACCGTCTACTCGGGCCCGCCGGCATGAACGATGCCTCCAGCCGTCCGCAC
CGGTGTCCGCGCAGGACGCCGGCGCGCACGGAGCGGCGGATCATCGCGATCCGGGTCAACCGGCGGTGGGGCCCGGCACGGACTCGGCTATCACCTCGGG
GTCCATCCTTCGACCGTGCACCGTGTCCTGGCCCGGTACGTCTGGCGAGACTGTCCTGGCTGGACCGTGCCACCGGACGGGTCATCCGCCGCTACGAACA
CGCCGCGCCCGGGGAGCTCGTGCACGTGGATATCAAGAAGCTCGGGAGGATCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
445 bp148 aa109553+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSHPNALLTPRGRLLLAQCVVDDGWPLRRAADVFQVSATTAARWSSRYRLLGPAGMNDASSRPHRCPRRTPARTERRIIAIRVNRRWGPARTRLSPRGPS
FDRAPCPGPVRLARLSWLDRATGRVIRRYEHAAPGELVHVDIKKLGRI

 

Blast result :
Comments
This is a partial sequence, the right end is truncated. ISBfu1 transposase is similar to the first part of ISAni1, IS1649, IS1652 and ISSco1 (64%), IS5564 and ISCgl1 (60%), IS1122 and IS1121 (53%) and ISBm3 (50%).
References
1] Ito,H.(1999)Direct Submission GenBank.