ISBfu1
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB025195 | ND | Brevibacterium fuscum | Brevibacterium fuscum var. dextranlyticum 0407 |
DNA section
IS Length : 553 bp
Ends
IR Length :
IRL : TGTATTGACCACAGAGGTTAGTGACGGTCGGCGTGGTTTGGTGACATGAA
IRR : --------------------------------------------------
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTCACCTCGA | GCTAGG | NNNNNNNNNN | 6 |
DNA sequence
TGTATTGACCACAGAGGTTAGTGACGGTCGGCGTGGTTTGGTGACATGAAGAAGACCTCCGGGTGAAGTGGGGCTTGTCTAGAGCATCCACTAACCAGGA
GGTCTTCAATGTCCCACCCTAACGCCCTACTGACACCTCGCGGGAGGTTGTTACTGGCCCAGTGTGTTGTCGATGATGGTTGGCCGCTGCGCCGGGCTGC
GGACGTCTTCCAGGTCTCTGCCACGACCGCTGCACGCTGGTCCTCCCGGTACCGTCTACTCGGGCCCGCCGGCATGAACGATGCCTCCAGCCGTCCGCAC
CGGTGTCCGCGCAGGACGCCGGCGCGCACGGAGCGGCGGATCATCGCGATCCGGGTCAACCGGCGGTGGGGCCCGGCACGGACTCGGCTATCACCTCGGG
GTCCATCCTTCGACCGTGCACCGTGTCCTGGCCCGGTACGTCTGGCGAGACTGTCCTGGCTGGACCGTGCCACCGGACGGGTCATCCGCCGCTACGAACA
CGCCGCGCCCGGGGAGCTCGTGCACGTGGATATCAAGAAGCTCGGGAGGATCC
GGTCTTCAATGTCCCACCCTAACGCCCTACTGACACCTCGCGGGAGGTTGTTACTGGCCCAGTGTGTTGTCGATGATGGTTGGCCGCTGCGCCGGGCTGC
GGACGTCTTCCAGGTCTCTGCCACGACCGCTGCACGCTGGTCCTCCCGGTACCGTCTACTCGGGCCCGCCGGCATGAACGATGCCTCCAGCCGTCCGCAC
CGGTGTCCGCGCAGGACGCCGGCGCGCACGGAGCGGCGGATCATCGCGATCCGGGTCAACCGGCGGTGGGGCCCGGCACGGACTCGGCTATCACCTCGGG
GTCCATCCTTCGACCGTGCACCGTGTCCTGGCCCGGTACGTCTGGCGAGACTGTCCTGGCTGGACCGTGCCACCGGACGGGTCATCCGCCGCTACGAACA
CGCCGCGCCCGGGGAGCTCGTGCACGTGGATATCAAGAAGCTCGGGAGGATCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
445 bp | 148 aa | 109 | 553 | + | No |
Chemistry : DDE
ORF sequence :
MSHPNALLTPRGRLLLAQCVVDDGWPLRRAADVFQVSATTAARWSSRYRLLGPAGMNDASSRPHRCPRRTPARTERRIIAIRVNRRWGPARTRLSPRGPS
FDRAPCPGPVRLARLSWLDRATGRVIRRYEHAAPGELVHVDIKKLGRI
FDRAPCPGPVRLARLSWLDRATGRVIRRYEHAAPGELVHVDIKKLGRI
Blast result :
Comments
This is a partial sequence, the right end is truncated. ISBfu1 transposase is similar to the first part of ISAni1, IS1649, IS1652 and ISSco1 (64%), IS5564 and ISCgl1 (60%), IS1122 and IS1121 (53%) and ISBm3 (50%).
References
1] Ito,H.(1999)Direct Submission GenBank.