ISSfr4
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AUTC01000182 | ND | Sinorhizobium fredii | Sinorhizobium fredii USDA 205 |
DNA section
IS Length : 2158 bp
Ends
IR Length : 22/25
IRL : ATGGCTTATCCCGTTCGCACAGGTGTTAACCACATCTAGCGTTCCAGAAT
IRR : AATGCTTATCCCGTTCGCACGGGTGGCCCCAATTAGTTGTGCTGGTGGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCTGCCAAAT | AATGGAA | TCGATGTCGT | 7 |
DNA sequence
ATGGCTTATCCCGTTCGCACAGGTGTTAACCACATCTAGCGTTCCAGAATGACGCACCTCCCCTTCTCCGATAAATGGAGGGCATGAGCGAGAGCCTGTT
TCCGACACGCTGGGCGAACGACAAGCTTCCATCGCTGGAGAAGTTCACATCGGACTTCGCCGACGACTACGCCTGCGCGGAATATCTGGCGAAGAAACGC
TGGAAGTCAGGCTTCCAATGCCCTCGCTGTGGAGGCAACCGGGCCTGGCGGTTGGAGGCTCGACCGTGGGTCTGGGAATGCCAGGGTGTCGTCGTCGATG
ATGACGGAAGGCGAACGTCCACCGGGTGCCGACACCAGACATCACTGATCGCTGGTACGGTGATGCACGGCACGCATCTTCCGCTCCGAACCTGGTTCCT
AGCCGCCTACCTTCTCGCCACCCATTCCAACGGGATGTCCGCCCTTCAGCTCCAGCCGAAGCTGGGCCTCGGCAGTTACAAGACGGCCTGGCTTCTGCTC
CACAAGCTTCGCCGGGCGATGGTCGATCCGCACAGGCGTCCGCTGCGCGGCATGATCGAGATCGACGAGACGAACGTGCCCTTCCGCCGCAAGGACGAGC
CGGAAGGCGGCGGTCAGGGGCGCAGCCCCATCGGCAAGATTTTCATGATTGGTGCCGTCGAGGTGGAGGCCGGGAAGTACCCGGCGCGATGCCGCCTGCA
GCGCATCGTCAACATCAACCGCGAGAGCCTGCACGCTTTCATCCGGGACAACACCGCCGTCGGCAGCCTGCTCGTCACCGACGGCAACACGGCCTACAGG
CGCTTGCCGGATCGCGGCCACCAGGCGATCAACCTGAGCGCCGTCGATGCTCCGCCAGCCCATGAGGTGCTGCCTTGGGTGCATCGGCTCTTCGCCAACT
TCAAGAGATGGAGCTACGGGACCTACCACGGTGTCCGCGACAAGCACGTCGACATCTACGCCAACGAGTTCGTCTTCCGTTGGAACCGCCGACGGCACTT
CCAGACCAACGTTGATACCATCCTCGGTCTCGGCCAGCGGATCGGACGAACGACCTGGCGCGACGTCGTCGGCGACACACGGGAATGGAAGACGGCGCAC
GAGGACCAGATTCTCGGCATGGTCAGTCCCGACAGGCTCGACCCCGCCAAGGACTACGCCGTGGAACACGGCTGCGACATCTTCGACGCCCTGGATGAAG
TCCGACGGAACGAGAAGAGGTGGCGATATGGTCGAAGGAAGCCGAAGCGCTCCGCGCTCCCGCCGAGGCGGATGGGCGAGGAGAGGAACACGAGGCGGTA
CATCCACCCAACAAGCCTAGCACCAACGGAGATCGCCAAAGGCCATCTCCGCCATATTCCCATTGGCTCAAAGATCACGGGTGGTCGGACCGCCTCACCC
CCGGAACCGCGAACGGCCGATACTATGGTTTAGGCCTCAAAGGACAATACGCTTAACTTATGCGGGCCGACATCGCGTTCCAAAACGCTCCAGCCAAAAG
CGGTATAAAAGGCTTCCAACTCTTGATGGCAGCATATGTACGAGACCCGATATCCCAGATCGGCAGCAGTTTTTGCTGCTGCCTCGACGAGTGATTTTCC
TACGCCGCGTTTGCGTTTACTCTCCTCCACCCAAACGGCCGCTACCCATGGCTTGTATTGTTGCCGCTCCTCCAAATCGCAATCGATGAGGAAGGCTGAT
CCGAGATAGCCGCTTTCATCATGAGCAACGAGCGCTGTCGGAAGAGAGCGATCATCGACCATTTCGGTCAGATGATGTGTAATATCGGAAAGATGAAGAC
CTGCGTCTTTCCACCAGGCATTCCATATTCGATCAGCAATAATTGGACCGAAATTTTGATGGTCCAGATAGTCCGCAACTTGATGCATCTAACACTCCTC
CTGCAGGGGTGTCTTCGTAGTGCATGCGGAGTAATATTTCAACCACTGCATGCGCCGCATCGCCAATAGCACGTTAAGCGACGCATCAAGCTGAACCATC
TGTGGATGCAAATATTCTGCGAAACGCCAACGGAGACTCTTTGGCGCGAATCGGTTCGGTAATTCTTCAAGAGTTCCGATCAAAGATGGCAATTGATTTT
CGCTGTCGATCCACCAGCACAACTAATTGGGGCCACCCGTGCGAACGGGATAAGCATT
TCCGACACGCTGGGCGAACGACAAGCTTCCATCGCTGGAGAAGTTCACATCGGACTTCGCCGACGACTACGCCTGCGCGGAATATCTGGCGAAGAAACGC
TGGAAGTCAGGCTTCCAATGCCCTCGCTGTGGAGGCAACCGGGCCTGGCGGTTGGAGGCTCGACCGTGGGTCTGGGAATGCCAGGGTGTCGTCGTCGATG
ATGACGGAAGGCGAACGTCCACCGGGTGCCGACACCAGACATCACTGATCGCTGGTACGGTGATGCACGGCACGCATCTTCCGCTCCGAACCTGGTTCCT
AGCCGCCTACCTTCTCGCCACCCATTCCAACGGGATGTCCGCCCTTCAGCTCCAGCCGAAGCTGGGCCTCGGCAGTTACAAGACGGCCTGGCTTCTGCTC
CACAAGCTTCGCCGGGCGATGGTCGATCCGCACAGGCGTCCGCTGCGCGGCATGATCGAGATCGACGAGACGAACGTGCCCTTCCGCCGCAAGGACGAGC
CGGAAGGCGGCGGTCAGGGGCGCAGCCCCATCGGCAAGATTTTCATGATTGGTGCCGTCGAGGTGGAGGCCGGGAAGTACCCGGCGCGATGCCGCCTGCA
GCGCATCGTCAACATCAACCGCGAGAGCCTGCACGCTTTCATCCGGGACAACACCGCCGTCGGCAGCCTGCTCGTCACCGACGGCAACACGGCCTACAGG
CGCTTGCCGGATCGCGGCCACCAGGCGATCAACCTGAGCGCCGTCGATGCTCCGCCAGCCCATGAGGTGCTGCCTTGGGTGCATCGGCTCTTCGCCAACT
TCAAGAGATGGAGCTACGGGACCTACCACGGTGTCCGCGACAAGCACGTCGACATCTACGCCAACGAGTTCGTCTTCCGTTGGAACCGCCGACGGCACTT
CCAGACCAACGTTGATACCATCCTCGGTCTCGGCCAGCGGATCGGACGAACGACCTGGCGCGACGTCGTCGGCGACACACGGGAATGGAAGACGGCGCAC
GAGGACCAGATTCTCGGCATGGTCAGTCCCGACAGGCTCGACCCCGCCAAGGACTACGCCGTGGAACACGGCTGCGACATCTTCGACGCCCTGGATGAAG
TCCGACGGAACGAGAAGAGGTGGCGATATGGTCGAAGGAAGCCGAAGCGCTCCGCGCTCCCGCCGAGGCGGATGGGCGAGGAGAGGAACACGAGGCGGTA
CATCCACCCAACAAGCCTAGCACCAACGGAGATCGCCAAAGGCCATCTCCGCCATATTCCCATTGGCTCAAAGATCACGGGTGGTCGGACCGCCTCACCC
CCGGAACCGCGAACGGCCGATACTATGGTTTAGGCCTCAAAGGACAATACGCTTAACTTATGCGGGCCGACATCGCGTTCCAAAACGCTCCAGCCAAAAG
CGGTATAAAAGGCTTCCAACTCTTGATGGCAGCATATGTACGAGACCCGATATCCCAGATCGGCAGCAGTTTTTGCTGCTGCCTCGACGAGTGATTTTCC
TACGCCGCGTTTGCGTTTACTCTCCTCCACCCAAACGGCCGCTACCCATGGCTTGTATTGTTGCCGCTCCTCCAAATCGCAATCGATGAGGAAGGCTGAT
CCGAGATAGCCGCTTTCATCATGAGCAACGAGCGCTGTCGGAAGAGAGCGATCATCGACCATTTCGGTCAGATGATGTGTAATATCGGAAAGATGAAGAC
CTGCGTCTTTCCACCAGGCATTCCATATTCGATCAGCAATAATTGGACCGAAATTTTGATGGTCCAGATAGTCCGCAACTTGATGCATCTAACACTCCTC
CTGCAGGGGTGTCTTCGTAGTGCATGCGGAGTAATATTTCAACCACTGCATGCGCCGCATCGCCAATAGCACGTTAAGCGACGCATCAAGCTGAACCATC
TGTGGATGCAAATATTCTGCGAAACGCCAACGGAGACTCTTTGGCGCGAATCGGTTCGGTAATTCTTCAAGAGTTCCGATCAAAGATGGCAATTGATTTT
CGCTGTCGATCCACCAGCACAACTAATTGGGGCCACCCGTGCGAACGGGATAAGCATT
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1350 bp | 449 aa | 84 | 1433 | + | No |
Chemistry : DDE
ORF sequence :
MSESLFPTRWANDKLPSLEKFTSDFADDYACAEYLAKKRWKSGFQCPRCGGNRAWRLEARPWVWECQGVVVDDDGRRTSTGCRHQTSLIAGTVMHGTHLP
LRTWFLAAYLLATHSNGMSALQLQPKLGLGSYKTAWLLLHKLRRAMVDPHRRPLRGMIEIDETNVPFRRKDEPEGGGQGRSPIGKIFMIGAVEVEAGKYP
ARCRLQRIVNINRESLHAFIRDNTAVGSLLVTDGNTAYRRLPDRGHQAINLSAVDAPPAHEVLPWVHRLFANFKRWSYGTYHGVRDKHVDIYANEFVFRW
NRRRHFQTNVDTILGLGQRIGRTTWRDVVGDTREWKTAHEDQILGMVSPDRLDPAKDYAVEHGCDIFDALDEVRRNEKRWRYGRRKPKRSALPPRRMGEE
RNTRRYIHPTSLAPTEIAKGHLRHIPIGSKITGGRTASPPEPRTADTMV
LRTWFLAAYLLATHSNGMSALQLQPKLGLGSYKTAWLLLHKLRRAMVDPHRRPLRGMIEIDETNVPFRRKDEPEGGGQGRSPIGKIFMIGAVEVEAGKYP
ARCRLQRIVNINRESLHAFIRDNTAVGSLLVTDGNTAYRRLPDRGHQAINLSAVDAPPAHEVLPWVHRLFANFKRWSYGTYHGVRDKHVDIYANEFVFRW
NRRRHFQTNVDTILGLGQRIGRTTWRDVVGDTREWKTAHEDQILGMVSPDRLDPAKDYAVEHGCDIFDALDEVRRNEKRWRYGRRKPKRSALPPRRMGEE
RNTRRYIHPTSLAPTEIAKGHLRHIPIGSKITGGRTASPPEPRTADTMV
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
459 bp | 152 aa | 1888 | 1430 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MHQVADYLDHQNFGPIIADRIWNAWWKDAGLHLSDITHHLTEMVDDRSLPTALVAHDESGYLGSAFLIDCDLEERQQYKPWVAAVWVEESKRKRGVGKSL
VEAAAKTAADLGYRVSYICCHQELEAFYTAFGWSVLERDVGPHKLSVLSFEA
VEAAAKTAADLGYRVSYICCHQELEAFYTAFGWSVLERDVGPHKLSVLSFEA
Blast result :
Comments
ISSfr4 is 68% aa similar to ISRhtr1.
References
1] ISfinder annotation (2017)
2] Zhang,L., Li,X., Wei,S. and Wang,G. (2013) Direct GenBank submission.
2] Zhang,L., Li,X., Wei,S. and Wang,G. (2013) Direct GenBank submission.