ISSfr4

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AUTC01000182 ND Sinorhizobium fredii
Sinorhizobium fredii USDA 205
DNA section
IS Length : 2158 bp

Ends


IR Length : 22/25

IRL : ATGGCTTATCCCGTTCGCACAGGTGTTAACCACATCTAGCGTTCCAGAAT
IRR : AATGCTTATCCCGTTCGCACGGGTGGCCCCAATTAGTTGTGCTGGTGGAT

Insertion site


Left flankDirect repeatRight flankDR Length
TCTGCCAAATAATGGAATCGATGTCGT7

DNA sequence

ATGGCTTATCCCGTTCGCACAGGTGTTAACCACATCTAGCGTTCCAGAATGACGCACCTCCCCTTCTCCGATAAATGGAGGGCATGAGCGAGAGCCTGTT
TCCGACACGCTGGGCGAACGACAAGCTTCCATCGCTGGAGAAGTTCACATCGGACTTCGCCGACGACTACGCCTGCGCGGAATATCTGGCGAAGAAACGC
TGGAAGTCAGGCTTCCAATGCCCTCGCTGTGGAGGCAACCGGGCCTGGCGGTTGGAGGCTCGACCGTGGGTCTGGGAATGCCAGGGTGTCGTCGTCGATG
ATGACGGAAGGCGAACGTCCACCGGGTGCCGACACCAGACATCACTGATCGCTGGTACGGTGATGCACGGCACGCATCTTCCGCTCCGAACCTGGTTCCT
AGCCGCCTACCTTCTCGCCACCCATTCCAACGGGATGTCCGCCCTTCAGCTCCAGCCGAAGCTGGGCCTCGGCAGTTACAAGACGGCCTGGCTTCTGCTC
CACAAGCTTCGCCGGGCGATGGTCGATCCGCACAGGCGTCCGCTGCGCGGCATGATCGAGATCGACGAGACGAACGTGCCCTTCCGCCGCAAGGACGAGC
CGGAAGGCGGCGGTCAGGGGCGCAGCCCCATCGGCAAGATTTTCATGATTGGTGCCGTCGAGGTGGAGGCCGGGAAGTACCCGGCGCGATGCCGCCTGCA
GCGCATCGTCAACATCAACCGCGAGAGCCTGCACGCTTTCATCCGGGACAACACCGCCGTCGGCAGCCTGCTCGTCACCGACGGCAACACGGCCTACAGG
CGCTTGCCGGATCGCGGCCACCAGGCGATCAACCTGAGCGCCGTCGATGCTCCGCCAGCCCATGAGGTGCTGCCTTGGGTGCATCGGCTCTTCGCCAACT
TCAAGAGATGGAGCTACGGGACCTACCACGGTGTCCGCGACAAGCACGTCGACATCTACGCCAACGAGTTCGTCTTCCGTTGGAACCGCCGACGGCACTT
CCAGACCAACGTTGATACCATCCTCGGTCTCGGCCAGCGGATCGGACGAACGACCTGGCGCGACGTCGTCGGCGACACACGGGAATGGAAGACGGCGCAC
GAGGACCAGATTCTCGGCATGGTCAGTCCCGACAGGCTCGACCCCGCCAAGGACTACGCCGTGGAACACGGCTGCGACATCTTCGACGCCCTGGATGAAG
TCCGACGGAACGAGAAGAGGTGGCGATATGGTCGAAGGAAGCCGAAGCGCTCCGCGCTCCCGCCGAGGCGGATGGGCGAGGAGAGGAACACGAGGCGGTA
CATCCACCCAACAAGCCTAGCACCAACGGAGATCGCCAAAGGCCATCTCCGCCATATTCCCATTGGCTCAAAGATCACGGGTGGTCGGACCGCCTCACCC
CCGGAACCGCGAACGGCCGATACTATGGTTTAGGCCTCAAAGGACAATACGCTTAACTTATGCGGGCCGACATCGCGTTCCAAAACGCTCCAGCCAAAAG
CGGTATAAAAGGCTTCCAACTCTTGATGGCAGCATATGTACGAGACCCGATATCCCAGATCGGCAGCAGTTTTTGCTGCTGCCTCGACGAGTGATTTTCC
TACGCCGCGTTTGCGTTTACTCTCCTCCACCCAAACGGCCGCTACCCATGGCTTGTATTGTTGCCGCTCCTCCAAATCGCAATCGATGAGGAAGGCTGAT
CCGAGATAGCCGCTTTCATCATGAGCAACGAGCGCTGTCGGAAGAGAGCGATCATCGACCATTTCGGTCAGATGATGTGTAATATCGGAAAGATGAAGAC
CTGCGTCTTTCCACCAGGCATTCCATATTCGATCAGCAATAATTGGACCGAAATTTTGATGGTCCAGATAGTCCGCAACTTGATGCATCTAACACTCCTC
CTGCAGGGGTGTCTTCGTAGTGCATGCGGAGTAATATTTCAACCACTGCATGCGCCGCATCGCCAATAGCACGTTAAGCGACGCATCAAGCTGAACCATC
TGTGGATGCAAATATTCTGCGAAACGCCAACGGAGACTCTTTGGCGCGAATCGGTTCGGTAATTCTTCAAGAGTTCCGATCAAAGATGGCAATTGATTTT
CGCTGTCGATCCACCAGCACAACTAATTGGGGCCACCCGTGCGAACGGGATAAGCATT
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1350 bp449 aa841433+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSESLFPTRWANDKLPSLEKFTSDFADDYACAEYLAKKRWKSGFQCPRCGGNRAWRLEARPWVWECQGVVVDDDGRRTSTGCRHQTSLIAGTVMHGTHLP
LRTWFLAAYLLATHSNGMSALQLQPKLGLGSYKTAWLLLHKLRRAMVDPHRRPLRGMIEIDETNVPFRRKDEPEGGGQGRSPIGKIFMIGAVEVEAGKYP
ARCRLQRIVNINRESLHAFIRDNTAVGSLLVTDGNTAYRRLPDRGHQAINLSAVDAPPAHEVLPWVHRLFANFKRWSYGTYHGVRDKHVDIYANEFVFRW
NRRRHFQTNVDTILGLGQRIGRTTWRDVVGDTREWKTAHEDQILGMVSPDRLDPAKDYAVEHGCDIFDALDEVRRNEKRWRYGRRKPKRSALPPRRMGEE
RNTRRYIHPTSLAPTEIAKGHLRHIPIGSKITGGRTASPPEPRTADTMV

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
459 bp152 aa18881430-No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MHQVADYLDHQNFGPIIADRIWNAWWKDAGLHLSDITHHLTEMVDDRSLPTALVAHDESGYLGSAFLIDCDLEERQQYKPWVAAVWVEESKRKRGVGKSL
VEAAAKTAADLGYRVSYICCHQELEAFYTAFGWSVLERDVGPHKLSVLSFEA

 

Blast result :
Comments
ISSfr4 is 68% aa similar to ISRhtr1.
References
1] ISfinder annotation (2017)
2] Zhang,L., Li,X., Wei,S. and Wang,G. (2013) Direct GenBank submission.