ISRcl1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FNQM01000060 | ND | Rubrimonas cliftonensis | Rubrimonas cliftonensis DSM 15345 |
DNA section
IS Length : 1183 bp
Ends
IR Length : 21/24
IRL : GTGGCTTATCCCGTTGAGGCAGGTTCCTCAAAATGTAGACATTCCATGAT
IRR : GTGGCTTATCCCGCTGAGTAAGGTCGTCCCACATTTGGTGCGGACAAGTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTGCGGACTT | TAACTTAA | TTTCACCGTC | 8 |
DNA sequence
GTGGCTTATCCCGTTGAGGCAGGTTCCTCAAAATGTAGACATTCCATGATTGACGATCATGGTTTGTTCCGACATGGCGTTGCGCATGGCAAGCCGCTGG
AAGCACGATCGCCCCATGTCTCGGACCGAGTTCGAAGCCCGGTTCCCGGACGACGACGCATGCGCGCGGCGCCTCGCCGCGAAGCGATGGCCTGACGGCT
TCGCCTGCCCGGATCCCAATTTTGCAGGCGCAAAGTTCTGGGCGCTGCGCTCGAAGCCGCACACCTGGGAGTGCTCGGGGTGCGGTCGGCAGACCTCGGT
GACGGCCGGCACGGTCATGCATCGCAGCCACCTGCCGTTGCGGGTCTGGTTCCTCGCGGCGCACATCGTCACGAGCCACTCGAACGGGATCTCGGCGCTC
CAGCTTCAAGCTCAGCTCGACCTTGGCTCCTACAAGACCGCCTGGCTGATGCTCCACAAGCTCCGGCGGGCCATGGTCGACCCTGACCGGGGCCTGCTCC
AAGGCTTCGTGGAGGTGGACGAGACAACCATGCCCTTCCGCAGGAAGTCGGATCCCGTCGCCGGCGGCCAGGGCCGCAGCCCCATCGGCAAGATGTTGAT
TGTAGGGGCGATTGAGCTTTCCGATGAGGGCCATCCGAGGCGCATCCGACTCAAGCACATACCGGATTCATCCGGCGAAGAGTTGAAGGCTTTCGCCAGC
AAGGTCGTGGAACCTGGCGCGATCTACACCACCGACGGGTGGAAGGGTTACAACTGGATCCCGCCCGAACAGCATGATCGCAAGGTCGTCGGCACGATGG
CCGCCCACGTCCTGCTACCCTGGATCCACCGCGTCTTCTCGAACCTGAAACGCTGGGCGATGGGTGTGCTTCATGGTCTCCGGCGCAAGCATCTCCAACG
CTACCTCGACGAGTTCGTGTTCCGCTGGAACCGACGACGACGGATGCGCGCGGCCTTCGAAACGATCCTCGGCATCGCTGTCGCGAAAATCCCGCAACCT
ATCGGGACTTCGTTGCGCAACGCGCCTGATCATGAGCGTTGGAAGAGCCCGGCAACCCCGATCCCTTGATCAGGGGCATTGCGCTTGGCGCCGAGGCCAC
CATGATACCCGGACGAAGACGCTCACGGGGCCATACTTGTCCGCACCAAATGTGGGACGACCTTACTCAGCGGGATAAGCCAC
AAGCACGATCGCCCCATGTCTCGGACCGAGTTCGAAGCCCGGTTCCCGGACGACGACGCATGCGCGCGGCGCCTCGCCGCGAAGCGATGGCCTGACGGCT
TCGCCTGCCCGGATCCCAATTTTGCAGGCGCAAAGTTCTGGGCGCTGCGCTCGAAGCCGCACACCTGGGAGTGCTCGGGGTGCGGTCGGCAGACCTCGGT
GACGGCCGGCACGGTCATGCATCGCAGCCACCTGCCGTTGCGGGTCTGGTTCCTCGCGGCGCACATCGTCACGAGCCACTCGAACGGGATCTCGGCGCTC
CAGCTTCAAGCTCAGCTCGACCTTGGCTCCTACAAGACCGCCTGGCTGATGCTCCACAAGCTCCGGCGGGCCATGGTCGACCCTGACCGGGGCCTGCTCC
AAGGCTTCGTGGAGGTGGACGAGACAACCATGCCCTTCCGCAGGAAGTCGGATCCCGTCGCCGGCGGCCAGGGCCGCAGCCCCATCGGCAAGATGTTGAT
TGTAGGGGCGATTGAGCTTTCCGATGAGGGCCATCCGAGGCGCATCCGACTCAAGCACATACCGGATTCATCCGGCGAAGAGTTGAAGGCTTTCGCCAGC
AAGGTCGTGGAACCTGGCGCGATCTACACCACCGACGGGTGGAAGGGTTACAACTGGATCCCGCCCGAACAGCATGATCGCAAGGTCGTCGGCACGATGG
CCGCCCACGTCCTGCTACCCTGGATCCACCGCGTCTTCTCGAACCTGAAACGCTGGGCGATGGGTGTGCTTCATGGTCTCCGGCGCAAGCATCTCCAACG
CTACCTCGACGAGTTCGTGTTCCGCTGGAACCGACGACGACGGATGCGCGCGGCCTTCGAAACGATCCTCGGCATCGCTGTCGCGAAAATCCCGCAACCT
ATCGGGACTTCGTTGCGCAACGCGCCTGATCATGAGCGTTGGAAGAGCCCGGCAACCCCGATCCCTTGATCAGGGGCATTGCGCTTGGCGCCGAGGCCAC
CATGATACCCGGACGAAGACGCTCACGGGGCCATACTTGTCCGCACCAAATGTGGGACGACCTTACTCAGCGGGATAAGCCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
954 bp | 317 aa | 116 | 1069 | + | No |
Chemistry : DDE
ORF sequence :
MSRTEFEARFPDDDACARRLAAKRWPDGFACPDPNFAGAKFWALRSKPHTWECSGCGRQTSVTAGTVMHRSHLPLRVWFLAAHIVTSHSNGISALQLQAQ
LDLGSYKTAWLMLHKLRRAMVDPDRGLLQGFVEVDETTMPFRRKSDPVAGGQGRSPIGKMLIVGAIELSDEGHPRRIRLKHIPDSSGEELKAFASKVVEP
GAIYTTDGWKGYNWIPPEQHDRKVVGTMAAHVLLPWIHRVFSNLKRWAMGVLHGLRRKHLQRYLDEFVFRWNRRRRMRAAFETILGIAVAKIPQPIGTSL
RNAPDHERWKSPATPIP
LDLGSYKTAWLMLHKLRRAMVDPDRGLLQGFVEVDETTMPFRRKSDPVAGGQGRSPIGKMLIVGAIELSDEGHPRRIRLKHIPDSSGEELKAFASKVVEP
GAIYTTDGWKGYNWIPPEQHDRKVVGTMAAHVLLPWIHRVFSNLKRWAMGVLHGLRRKHLQRYLDEFVFRWNRRRRMRAAFETILGIAVAKIPQPIGTSL
RNAPDHERWKSPATPIP
Blast result :
Comments
ISRcl1 is 75% aa similar to ISOan10.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct Genbank submission.
2] Varghese,N. and Submissions,S. (2016) Direct Genbank submission.