ISRcl1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FNQM01000060 ND Rubrimonas cliftonensis
Rubrimonas cliftonensis DSM 15345
DNA section
IS Length : 1183 bp

Ends


IR Length : 21/24

IRL : GTGGCTTATCCCGTTGAGGCAGGTTCCTCAAAATGTAGACATTCCATGAT
IRR : GTGGCTTATCCCGCTGAGTAAGGTCGTCCCACATTTGGTGCGGACAAGTA

Insertion site


Left flankDirect repeatRight flankDR Length
CTGCGGACTTTAACTTAATTTCACCGTC8

DNA sequence

GTGGCTTATCCCGTTGAGGCAGGTTCCTCAAAATGTAGACATTCCATGATTGACGATCATGGTTTGTTCCGACATGGCGTTGCGCATGGCAAGCCGCTGG
AAGCACGATCGCCCCATGTCTCGGACCGAGTTCGAAGCCCGGTTCCCGGACGACGACGCATGCGCGCGGCGCCTCGCCGCGAAGCGATGGCCTGACGGCT
TCGCCTGCCCGGATCCCAATTTTGCAGGCGCAAAGTTCTGGGCGCTGCGCTCGAAGCCGCACACCTGGGAGTGCTCGGGGTGCGGTCGGCAGACCTCGGT
GACGGCCGGCACGGTCATGCATCGCAGCCACCTGCCGTTGCGGGTCTGGTTCCTCGCGGCGCACATCGTCACGAGCCACTCGAACGGGATCTCGGCGCTC
CAGCTTCAAGCTCAGCTCGACCTTGGCTCCTACAAGACCGCCTGGCTGATGCTCCACAAGCTCCGGCGGGCCATGGTCGACCCTGACCGGGGCCTGCTCC
AAGGCTTCGTGGAGGTGGACGAGACAACCATGCCCTTCCGCAGGAAGTCGGATCCCGTCGCCGGCGGCCAGGGCCGCAGCCCCATCGGCAAGATGTTGAT
TGTAGGGGCGATTGAGCTTTCCGATGAGGGCCATCCGAGGCGCATCCGACTCAAGCACATACCGGATTCATCCGGCGAAGAGTTGAAGGCTTTCGCCAGC
AAGGTCGTGGAACCTGGCGCGATCTACACCACCGACGGGTGGAAGGGTTACAACTGGATCCCGCCCGAACAGCATGATCGCAAGGTCGTCGGCACGATGG
CCGCCCACGTCCTGCTACCCTGGATCCACCGCGTCTTCTCGAACCTGAAACGCTGGGCGATGGGTGTGCTTCATGGTCTCCGGCGCAAGCATCTCCAACG
CTACCTCGACGAGTTCGTGTTCCGCTGGAACCGACGACGACGGATGCGCGCGGCCTTCGAAACGATCCTCGGCATCGCTGTCGCGAAAATCCCGCAACCT
ATCGGGACTTCGTTGCGCAACGCGCCTGATCATGAGCGTTGGAAGAGCCCGGCAACCCCGATCCCTTGATCAGGGGCATTGCGCTTGGCGCCGAGGCCAC
CATGATACCCGGACGAAGACGCTCACGGGGCCATACTTGTCCGCACCAAATGTGGGACGACCTTACTCAGCGGGATAAGCCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
954 bp317 aa1161069+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSRTEFEARFPDDDACARRLAAKRWPDGFACPDPNFAGAKFWALRSKPHTWECSGCGRQTSVTAGTVMHRSHLPLRVWFLAAHIVTSHSNGISALQLQAQ
LDLGSYKTAWLMLHKLRRAMVDPDRGLLQGFVEVDETTMPFRRKSDPVAGGQGRSPIGKMLIVGAIELSDEGHPRRIRLKHIPDSSGEELKAFASKVVEP
GAIYTTDGWKGYNWIPPEQHDRKVVGTMAAHVLLPWIHRVFSNLKRWAMGVLHGLRRKHLQRYLDEFVFRWNRRRRMRAAFETILGIAVAKIPQPIGTSL
RNAPDHERWKSPATPIP

 

Blast result :
Comments
ISRcl1 is 75% aa similar to ISOan10.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct Genbank submission.