ISPxsp1

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003093 ND Pseudoxanthomonas spadix
Pseudoxanthomonas spadix BD-a59
DNA section
IS Length : 1061 bp

Ends


IR Length : 23/24

IRL : CCTGATTAGCACGCTACTTCAGCCCGGTCGCAGCCTGTGAGTCAGCAGCC
IRR : CCTGATTAGCACGCTATTTCAGCCGAGAAAACCGGGACATCGCGCAAGCG

Insertion site


Left flankDirect repeatRight flankDR Length
CTCCCTTTCTTGTGATCAATTGCCTTCC8

DNA sequence

CCTGATTAGCACGCTACTTCAGCCCGGTCGCAGCCTGTGAGTCAGCAGCCCTGCACATTGACGGCAAGTCGCTTGTGCAGGGGTCAGATCATGGCAATGA
ATCGCGTCCAGTTCCAACCAGGGCTGTCGCTGCCGGCCTTCCTGGCCCAGTACGGCAGCGAAGGTCAGTGCGAGCGCGCGTTGGAGGCGGCCCGCTGGCC
GGATGGGTTCGTCTGTCCCCGCTGCGCCGACAAGGGATGTAGCAAGTTCTACCGTCACCGGCAGGCCTACTGGCAGTGTTCGCAGTGCCGCCACCAGAGC
AGCCTGCGCTCGGGAACGGTGTTCGAGCACAGCCGGCTGCCCTTGAGGACCTGGCTGCTGGCGATGTACCTGCTGGGCCAGAGCAAGACCAACCTGTCTG
CCTTGGAGTTGATGCGGCATCTTGAAGTGAGCTATCCGGCGGCCTGGCGGATGAAGCACAAGCTGATGCAGGCCATGGACGAACGGGAAGCCGGGCGCAA
GCTCGGGGGCGTGGTGCAGTTGGACGATGCCTATCTGGGCGGGGAGCGCAACGGCGGCAAGGCCGGCCGGGGATCGGAGAACAAGCGTCCTTTCGTGATC
GCCGTGGAAACCACGCAGGACGGTCGGCCACGGCATGTGGTCATCGACCCGGTCCCGGGATTCACCAAGACGGCGCTGTCGGACTGGATCGCCCGGCGCC
TGCACCCGCGTTCGGATGTCTACAGCGACGGTCTGGGGGCTTTTCGGGCGCTGGAAGCCGAACACGCGCACACGGTGATTGAAGGCGGTGGGCGAGCTGG
CTGCGAGCAGGACAACGCCCGCTGGGTCAACGTCGTGCTGTCCAATTTGAAGCGATCACTGGATGGAGCCTACCACGCCTTCAAGTTCACCAAGTATGCC
CATCGCTATCTGGCCGAGACGCAATGGCGGTTCAACCGGCGCTTCGATCTGGTGGCCCTGGTGCCAAGACTGCTGGTGGCCGCGGCGAGGATCAAGCCAT
GGCCCGAGCGCCGCTTGCGCGATGTCCCGGTTTTCTCGGCTGAAATAGCGTGCTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1020 bp319 aa371056+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNRVQFQPGLSLPAFLAQYGSEGQCERALEAARWPDGFVCPRCADKGCSKFYRHRQAYWQCSQCRHQSSLRSGTVFEHSRLPLRTWLLAMYLLGQSKTNL
SALELMRHLEVSYPAAWRMKHKLMQAMDEREAGRKLGGVVQLDDAYLGGERNGGKAGRGSENKRPFVIAVETTQDGRPRHVVIDPVPGFTKTALSDWIAR
RLHPRSDVYSDGLGAFRALEAEHAHTVIEGGGRAGCEQDNARWVNVVLSNLKRSLDGAYHAFKFTKYAHRYLAETQWRFNRRFDLVALVPRLLVAAARIK
PWPERRLRDVPVFSAEIAC

 

Blast result :
Comments
ISPxsp1 is 85% aa similar to ISXo5.
References
1] ISfinder annotation (2017)
2] Lee,S.H., Jin,H.M., Lee,H.J., Kim,J.M. and Jeon,C.O. (2011) Direct GenBank submission.