ISPxsp1
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003093 | ND | Pseudoxanthomonas spadix | Pseudoxanthomonas spadix BD-a59 |
DNA section
IS Length : 1061 bp
Ends
IR Length : 23/24
IRL : CCTGATTAGCACGCTACTTCAGCCCGGTCGCAGCCTGTGAGTCAGCAGCC
IRR : CCTGATTAGCACGCTATTTCAGCCGAGAAAACCGGGACATCGCGCAAGCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTCCCTTTCT | TGTGATCA | ATTGCCTTCC | 8 |
DNA sequence
CCTGATTAGCACGCTACTTCAGCCCGGTCGCAGCCTGTGAGTCAGCAGCCCTGCACATTGACGGCAAGTCGCTTGTGCAGGGGTCAGATCATGGCAATGA
ATCGCGTCCAGTTCCAACCAGGGCTGTCGCTGCCGGCCTTCCTGGCCCAGTACGGCAGCGAAGGTCAGTGCGAGCGCGCGTTGGAGGCGGCCCGCTGGCC
GGATGGGTTCGTCTGTCCCCGCTGCGCCGACAAGGGATGTAGCAAGTTCTACCGTCACCGGCAGGCCTACTGGCAGTGTTCGCAGTGCCGCCACCAGAGC
AGCCTGCGCTCGGGAACGGTGTTCGAGCACAGCCGGCTGCCCTTGAGGACCTGGCTGCTGGCGATGTACCTGCTGGGCCAGAGCAAGACCAACCTGTCTG
CCTTGGAGTTGATGCGGCATCTTGAAGTGAGCTATCCGGCGGCCTGGCGGATGAAGCACAAGCTGATGCAGGCCATGGACGAACGGGAAGCCGGGCGCAA
GCTCGGGGGCGTGGTGCAGTTGGACGATGCCTATCTGGGCGGGGAGCGCAACGGCGGCAAGGCCGGCCGGGGATCGGAGAACAAGCGTCCTTTCGTGATC
GCCGTGGAAACCACGCAGGACGGTCGGCCACGGCATGTGGTCATCGACCCGGTCCCGGGATTCACCAAGACGGCGCTGTCGGACTGGATCGCCCGGCGCC
TGCACCCGCGTTCGGATGTCTACAGCGACGGTCTGGGGGCTTTTCGGGCGCTGGAAGCCGAACACGCGCACACGGTGATTGAAGGCGGTGGGCGAGCTGG
CTGCGAGCAGGACAACGCCCGCTGGGTCAACGTCGTGCTGTCCAATTTGAAGCGATCACTGGATGGAGCCTACCACGCCTTCAAGTTCACCAAGTATGCC
CATCGCTATCTGGCCGAGACGCAATGGCGGTTCAACCGGCGCTTCGATCTGGTGGCCCTGGTGCCAAGACTGCTGGTGGCCGCGGCGAGGATCAAGCCAT
GGCCCGAGCGCCGCTTGCGCGATGTCCCGGTTTTCTCGGCTGAAATAGCGTGCTAATCAGG
ATCGCGTCCAGTTCCAACCAGGGCTGTCGCTGCCGGCCTTCCTGGCCCAGTACGGCAGCGAAGGTCAGTGCGAGCGCGCGTTGGAGGCGGCCCGCTGGCC
GGATGGGTTCGTCTGTCCCCGCTGCGCCGACAAGGGATGTAGCAAGTTCTACCGTCACCGGCAGGCCTACTGGCAGTGTTCGCAGTGCCGCCACCAGAGC
AGCCTGCGCTCGGGAACGGTGTTCGAGCACAGCCGGCTGCCCTTGAGGACCTGGCTGCTGGCGATGTACCTGCTGGGCCAGAGCAAGACCAACCTGTCTG
CCTTGGAGTTGATGCGGCATCTTGAAGTGAGCTATCCGGCGGCCTGGCGGATGAAGCACAAGCTGATGCAGGCCATGGACGAACGGGAAGCCGGGCGCAA
GCTCGGGGGCGTGGTGCAGTTGGACGATGCCTATCTGGGCGGGGAGCGCAACGGCGGCAAGGCCGGCCGGGGATCGGAGAACAAGCGTCCTTTCGTGATC
GCCGTGGAAACCACGCAGGACGGTCGGCCACGGCATGTGGTCATCGACCCGGTCCCGGGATTCACCAAGACGGCGCTGTCGGACTGGATCGCCCGGCGCC
TGCACCCGCGTTCGGATGTCTACAGCGACGGTCTGGGGGCTTTTCGGGCGCTGGAAGCCGAACACGCGCACACGGTGATTGAAGGCGGTGGGCGAGCTGG
CTGCGAGCAGGACAACGCCCGCTGGGTCAACGTCGTGCTGTCCAATTTGAAGCGATCACTGGATGGAGCCTACCACGCCTTCAAGTTCACCAAGTATGCC
CATCGCTATCTGGCCGAGACGCAATGGCGGTTCAACCGGCGCTTCGATCTGGTGGCCCTGGTGCCAAGACTGCTGGTGGCCGCGGCGAGGATCAAGCCAT
GGCCCGAGCGCCGCTTGCGCGATGTCCCGGTTTTCTCGGCTGAAATAGCGTGCTAATCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1020 bp | 319 aa | 37 | 1056 | + | No |
Chemistry : DDE
ORF sequence :
MNRVQFQPGLSLPAFLAQYGSEGQCERALEAARWPDGFVCPRCADKGCSKFYRHRQAYWQCSQCRHQSSLRSGTVFEHSRLPLRTWLLAMYLLGQSKTNL
SALELMRHLEVSYPAAWRMKHKLMQAMDEREAGRKLGGVVQLDDAYLGGERNGGKAGRGSENKRPFVIAVETTQDGRPRHVVIDPVPGFTKTALSDWIAR
RLHPRSDVYSDGLGAFRALEAEHAHTVIEGGGRAGCEQDNARWVNVVLSNLKRSLDGAYHAFKFTKYAHRYLAETQWRFNRRFDLVALVPRLLVAAARIK
PWPERRLRDVPVFSAEIAC
SALELMRHLEVSYPAAWRMKHKLMQAMDEREAGRKLGGVVQLDDAYLGGERNGGKAGRGSENKRPFVIAVETTQDGRPRHVVIDPVPGFTKTALSDWIAR
RLHPRSDVYSDGLGAFRALEAEHAHTVIEGGGRAGCEQDNARWVNVVLSNLKRSLDGAYHAFKFTKYAHRYLAETQWRFNRRFDLVALVPRLLVAAARIK
PWPERRLRDVPVFSAEIAC
Blast result :
Comments
ISPxsp1 is 85% aa similar to ISXo5.
References
1] ISfinder annotation (2017)
2] Lee,S.H., Jin,H.M., Lee,H.J., Kim,J.M. and Jeon,C.O. (2011) Direct GenBank submission.
2] Lee,S.H., Jin,H.M., Lee,H.J., Kim,J.M. and Jeon,C.O. (2011) Direct GenBank submission.