ISBuba3

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MESL01000024 ND Burkholderiales bacterium
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_65_40
DNA section
IS Length : 1058 bp

Ends


IR Length : 21/23

IRL : CCTGATTAGCGACATACCTCAGATTGTCGTGAACATTCAGCCATAGCAGT
IRR : CCTGATTAGCTACGTACCTCAGACACGCAGCTCCTTCAATGGAAGGGGCC

Insertion site


Left flankDirect repeatRight flankDR Length
GGGTTTCAATATGTTTTATATCTGAAAGC7

DNA sequence

CCTGATTAGCGACATACCTCAGATTGTCGTGAACATTCAGCCATAGCAGTGCTCCAACAAGCAATGCCGAGTCATCGGCCCAGGAGCAGGCAATGTCCAT
GAATGCCATCCAGTTCCAGCGCGGCCTCTCACTGCCCCAGTTTCAGGCTCTCTACGGCAGTGAAGATCAATGTGAGCGCGCCCTGGTGGCCGCCCGCTGG
CCCCATGGCTGGCAGTGTGCCCACTGCGGTTGCAAGCGCTTCTTTCTCACCCGCAATGGCTCCGGCCGCCAGCTGTGGGAGTGTTTTATCTGTGGCTACC
AAAGCTCCAGCATCGTGGGCACCGTGATGGAGCACACCCATCTGCCGCTACGGCTGTGGTTTCTGGCCATGTACCTTCTCACCCAGCACAAGAACGCCAT
CAGCGCCCTGGCGCTCAAGCGCCAGCTCGGGGTGTCTTACAAGACAGCGTGGCTGCTCAAACACAAGCTGATGCAGACCATGGGCCAGCGCGATGCACGC
TATGTGCTGAGCGGGCGTGTGGAGATTGATGATGCCTACCTTGGGGGCGAGCGCGCAGGCAGCATCAACGGTGGACGCAAGGCAGCCAACAAGACGGCCT
TTGTGGCGGCCGTACAGACCAGCGAGGATGGCAGGCCGCTGTACCTGCGGCTGGTGCCAGTAGTGGACTTCACGAACCAGGAGATGGCGCAGTGGGCGCA
GCGCCATTTGGCGCCGGGCTGTCATGTGGTCAGCGATGGCACGCATGCCTTTGCCCAGGTACGCCAGGCCAGCGCCACGCATGAGCGCCACGTCACGGGT
GGTGGCCGCCAGGGGGCGCAGACGCCCCAGCTGCACTGGGTCAACACCCTGCTGGGCAATCTCAAGACCAGCATGGCGGGCACGTACCATTCGTTTGATC
ATGCCAAATATGCTGCACGCTACTTGGCTGAGTTCTGTTACCGCTTCAACCGCCGATATGACCTGCCCGCCATGCTACAGAGGCTGCTGCGGGCGCTGGC
GACCACAAGGCCCCTTCCATTGAAGGAGCTGCGTGTCTGAGGTACGTAGCTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
948 bp315 aa931040+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSMNAIQFQRGLSLPQFQALYGSEDQCERALVAARWPHGWQCAHCGCKRFFLTRNGSGRQLWECFICGYQSSSIVGTVMEHTHLPLRLWFLAMYLLTQHK
NAISALALKRQLGVSYKTAWLLKHKLMQTMGQRDARYVLSGRVEIDDAYLGGERAGSINGGRKAANKTAFVAAVQTSEDGRPLYLRLVPVVDFTNQEMAQ
WAQRHLAPGCHVVSDGTHAFAQVRQASATHERHVTGGGRQGAQTPQLHWVNTLLGNLKTSMAGTYHSFDHAKYAARYLAEFCYRFNRRYDLPAMLQRLLR
ALATTRPLPLKELRV

 

Blast result :
Comments
ISBuba3 is 68% aa similar to ISTni3.
References
1] ISfinder annotation (2017)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.