ISBuba3
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MESL01000024 | ND | Burkholderiales bacterium | Burkholderiales bacterium RIFCSPLOWO2_12_FULL_65_40 |
DNA section
IS Length : 1058 bp
Ends
IR Length : 21/23
IRL : CCTGATTAGCGACATACCTCAGATTGTCGTGAACATTCAGCCATAGCAGT
IRR : CCTGATTAGCTACGTACCTCAGACACGCAGCTCCTTCAATGGAAGGGGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGGTTTCAATA | TGTTTTA | TATCTGAAAGC | 7 |
DNA sequence
CCTGATTAGCGACATACCTCAGATTGTCGTGAACATTCAGCCATAGCAGTGCTCCAACAAGCAATGCCGAGTCATCGGCCCAGGAGCAGGCAATGTCCAT
GAATGCCATCCAGTTCCAGCGCGGCCTCTCACTGCCCCAGTTTCAGGCTCTCTACGGCAGTGAAGATCAATGTGAGCGCGCCCTGGTGGCCGCCCGCTGG
CCCCATGGCTGGCAGTGTGCCCACTGCGGTTGCAAGCGCTTCTTTCTCACCCGCAATGGCTCCGGCCGCCAGCTGTGGGAGTGTTTTATCTGTGGCTACC
AAAGCTCCAGCATCGTGGGCACCGTGATGGAGCACACCCATCTGCCGCTACGGCTGTGGTTTCTGGCCATGTACCTTCTCACCCAGCACAAGAACGCCAT
CAGCGCCCTGGCGCTCAAGCGCCAGCTCGGGGTGTCTTACAAGACAGCGTGGCTGCTCAAACACAAGCTGATGCAGACCATGGGCCAGCGCGATGCACGC
TATGTGCTGAGCGGGCGTGTGGAGATTGATGATGCCTACCTTGGGGGCGAGCGCGCAGGCAGCATCAACGGTGGACGCAAGGCAGCCAACAAGACGGCCT
TTGTGGCGGCCGTACAGACCAGCGAGGATGGCAGGCCGCTGTACCTGCGGCTGGTGCCAGTAGTGGACTTCACGAACCAGGAGATGGCGCAGTGGGCGCA
GCGCCATTTGGCGCCGGGCTGTCATGTGGTCAGCGATGGCACGCATGCCTTTGCCCAGGTACGCCAGGCCAGCGCCACGCATGAGCGCCACGTCACGGGT
GGTGGCCGCCAGGGGGCGCAGACGCCCCAGCTGCACTGGGTCAACACCCTGCTGGGCAATCTCAAGACCAGCATGGCGGGCACGTACCATTCGTTTGATC
ATGCCAAATATGCTGCACGCTACTTGGCTGAGTTCTGTTACCGCTTCAACCGCCGATATGACCTGCCCGCCATGCTACAGAGGCTGCTGCGGGCGCTGGC
GACCACAAGGCCCCTTCCATTGAAGGAGCTGCGTGTCTGAGGTACGTAGCTAATCAGG
GAATGCCATCCAGTTCCAGCGCGGCCTCTCACTGCCCCAGTTTCAGGCTCTCTACGGCAGTGAAGATCAATGTGAGCGCGCCCTGGTGGCCGCCCGCTGG
CCCCATGGCTGGCAGTGTGCCCACTGCGGTTGCAAGCGCTTCTTTCTCACCCGCAATGGCTCCGGCCGCCAGCTGTGGGAGTGTTTTATCTGTGGCTACC
AAAGCTCCAGCATCGTGGGCACCGTGATGGAGCACACCCATCTGCCGCTACGGCTGTGGTTTCTGGCCATGTACCTTCTCACCCAGCACAAGAACGCCAT
CAGCGCCCTGGCGCTCAAGCGCCAGCTCGGGGTGTCTTACAAGACAGCGTGGCTGCTCAAACACAAGCTGATGCAGACCATGGGCCAGCGCGATGCACGC
TATGTGCTGAGCGGGCGTGTGGAGATTGATGATGCCTACCTTGGGGGCGAGCGCGCAGGCAGCATCAACGGTGGACGCAAGGCAGCCAACAAGACGGCCT
TTGTGGCGGCCGTACAGACCAGCGAGGATGGCAGGCCGCTGTACCTGCGGCTGGTGCCAGTAGTGGACTTCACGAACCAGGAGATGGCGCAGTGGGCGCA
GCGCCATTTGGCGCCGGGCTGTCATGTGGTCAGCGATGGCACGCATGCCTTTGCCCAGGTACGCCAGGCCAGCGCCACGCATGAGCGCCACGTCACGGGT
GGTGGCCGCCAGGGGGCGCAGACGCCCCAGCTGCACTGGGTCAACACCCTGCTGGGCAATCTCAAGACCAGCATGGCGGGCACGTACCATTCGTTTGATC
ATGCCAAATATGCTGCACGCTACTTGGCTGAGTTCTGTTACCGCTTCAACCGCCGATATGACCTGCCCGCCATGCTACAGAGGCTGCTGCGGGCGCTGGC
GACCACAAGGCCCCTTCCATTGAAGGAGCTGCGTGTCTGAGGTACGTAGCTAATCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
948 bp | 315 aa | 93 | 1040 | + | No |
Chemistry : DDE
ORF sequence :
MSMNAIQFQRGLSLPQFQALYGSEDQCERALVAARWPHGWQCAHCGCKRFFLTRNGSGRQLWECFICGYQSSSIVGTVMEHTHLPLRLWFLAMYLLTQHK
NAISALALKRQLGVSYKTAWLLKHKLMQTMGQRDARYVLSGRVEIDDAYLGGERAGSINGGRKAANKTAFVAAVQTSEDGRPLYLRLVPVVDFTNQEMAQ
WAQRHLAPGCHVVSDGTHAFAQVRQASATHERHVTGGGRQGAQTPQLHWVNTLLGNLKTSMAGTYHSFDHAKYAARYLAEFCYRFNRRYDLPAMLQRLLR
ALATTRPLPLKELRV
NAISALALKRQLGVSYKTAWLLKHKLMQTMGQRDARYVLSGRVEIDDAYLGGERAGSINGGRKAANKTAFVAAVQTSEDGRPLYLRLVPVVDFTNQEMAQ
WAQRHLAPGCHVVSDGTHAFAQVRQASATHERHVTGGGRQGAQTPQLHWVNTLLGNLKTSMAGTYHSFDHAKYAARYLAEFCYRFNRRYDLPAMLQRLLR
ALATTRPLPLKELRV
Blast result :
Comments
ISBuba3 is 68% aa similar to ISTni3.
References
1] ISfinder annotation (2017)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.