ISBf2
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AP006841 | ND | Bacteroides fragilis | Bacteroides fragilis YCH46 Bacteroides fragilis RBF49 |
DNA section
IS Length : 2544 bp
Ends
IR Length : 11/17
IRL : TGTAGGCTGTAACTTTATCTTTCAAAAAGTGGAAAAAGCAAAGGTACCAC
IRR : TGTACCGAGCAAATTTACAGGTCCCTTTTTTGTGCAATTTAACAGTATCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCATGTATAA | TCCAATAA | TTATTTTTTT | 8 |
DNA sequence
TGTAGGCTGTAACTTTATCTTTCAAAAAGTGGAAAAAGCAAAGGTACCACTTTTATAGAGACGAATACAGTGTTTTTTGCATGTCGGGGAATGTCTATCT
TTGCCGCTCAAACAAAGCATAGACAGATACTGCAATGGAAATAAGGAAACAATATTTTAAGGAGAAACAATATATGTGGCATAAAGTAAGGGAGCTTCAG
TTGAAAGGACTGAACAAAACACAAATTGGAATATATCTGGGTGTGAACCGTAAGACTGTACGACGGTATCTGAATATGACTATGGAGGAGTTTGTTAAAA
AACAAAGTTCTCACCGCAAGTACAGGCTGAAACTGGAAAACTACGAGCAATATGTACGTGCAAACCTGGAAGAATACCCGTATATATCGGCCGCCAGGAT
ACATGACTGGCTGAAGGAATGCTATCCGGACTTCCCCCGTGTATGTAACAGAACCATATCCGGTTTCGTGGAAAGGGTACGCAAAAAATACGGCATCGGG
AAAAAGGTTGAAACGCATAAGCGAAACTACGAGAAGCAGCCTGATACTCCCTACGGGGAATACGCACAGGCGGATTTTGGGGAGAAATGTATGCGCACTG
AAAACGGGAAGTCCATCAAAGTGTACTTCTTTGCTATTGTCCTGTCCCGTTCACGATATAAATTTATCTATTTTAGCCGGAGGCCCTTTGACACCGGGCT
TGCGGTTTATGCCCATGAACTTGCCTTCGAATACTTCGGAGGCAGGCCGCAAAAGATCATTTACGACCAGGATAAAGTACTTATAGCACGGGCGAACATG
GGGGATTTGATACTGACCGGCAAATTTCAGGCATTTGTAAAAGAGCAGCATTTCCATCCCGTGTTCTGTCACAAGGCCGATCCGGAGTCAAAGGGGAGGG
TAGAGAATGTTGTGAAATATGTGAAGACGAATTTCCTCACGGCACGTATTTTTCAGAATGTAGACAGACTTAATGAAGAAGCACGTCTCTGGCTTGAAAG
AACGGGAAACGGGAAGGAATATGGTACCACACACCGGATTCCCCTTGAGGAATTTGCACAGGAAAGAGAATACCTTGTACCCTATCACGGTACTCCGCAC
TCACCCGGTGGAGAAATGAAGGAATATCATGTACGTAAAGACAATACCGTACAGTACAGGGGAAACTACTATAGCCTGCCATGCGGAACCTATCGGGGAG
GAGAAACGACAGTATGGCTCCATGAAACAGACGGATGCCTGGAACTTTATAATAAGGAGACGGGAAAGCTTGTCTGCCGGCATGATCTGTGCGAACTCAA
GGGAAAGACTATCTATGGTGAAGGACACAGAAGGCAAAGAAATATCGGAGCACAAAAGCTGGCTGAACGCATTCTTATCTATGTATCGTACAATAGAGAG
GTCGCCTTATGGCTTGAGAACCTGCAGAGAAGGAAGGAACGTTATTACAGGGAGAATCTGGAGGTAATTCTACGCATAATTCCCGGATATGACAAAGCCA
TCCTGACAGAAGCGGTTAGTGTATGTCTGGACAAGGGAATCTATAATGGTGAGTCCGTTAAAAGCCTGTGCGGACATATATGGAAGAAGAAAATGAGAGA
ATCGGATGTAGGAAAAAATCCTGCTTCCCGGACACAGTCAACCGGATTGGTAAAAACATATAATGAAATCTTTAGAAACAATGGCAAGGTATAAGAAAGA
ACTGACCGAATGTGCCCGCAACCTGAAGCTGCCATTCCTGGCAGAACACCTGGATGAAATACTACATGAAGCACAGGAAAAGCAACAGACTTACTCCGAG
TTTCTGTCAACTTGTCTGATGCGGGAACTTCGGGACAAGGAAAGGAGAAGTTATCTGACCAGGTTGAAATTTGCAGGATTGCCTGCAAGGTATGATCTGG
ATCTATATGATTTCTCACGTACCGAAGGGATTGACCAAAGGCAGATGCGCGAATTGCGTGAACTGGTATGGATAAGAAGGACATATAATCTTCTGCTGGT
AGGAGATTCCGGAACCGGAAAGACATTCATTGCTTCAGGACTTATCCATGAAGCAGTGAAAGCGGGTTATAAGGCATACCTGCTGACCTTGGAAGAACTG
TTTGTCTGTTTGAAGACTAAGGAGATATCACGACCCGCGATGAAAACATACAAACGAATAATGAAAGCGCAGCTGCTGGCAATCGATGATGTTACGCTGT
TTCCCCTGAAAGGAGAAGATGTACTGCTACTGTTTAAACTGGTGAATTGCGTTCAAGGTAAGACATCACTTATCATTACCGCAAGCCGGGATCTTACCGG
ATGGCTGGAGATGGCAGGAGACGAAGTTTGTGCGGCAGCTCTACTGGACAGACTACTCTATTGTTGTGAGATAATCAGGCTATCAGGAAAAAGCTACCGC
ATGGAAAACAGGAAAACAATTTTTAGCAATCAACAGATAGGGACTGCATCTTAAAAAAAAGTTAATGAAAGTAAAGAAGAGAACTAAGGAAAGTGGATAC
TGTTAAATTGCACAAAAAAGGGACCTGTAAATTTGCTCGGTACA
TTGCCGCTCAAACAAAGCATAGACAGATACTGCAATGGAAATAAGGAAACAATATTTTAAGGAGAAACAATATATGTGGCATAAAGTAAGGGAGCTTCAG
TTGAAAGGACTGAACAAAACACAAATTGGAATATATCTGGGTGTGAACCGTAAGACTGTACGACGGTATCTGAATATGACTATGGAGGAGTTTGTTAAAA
AACAAAGTTCTCACCGCAAGTACAGGCTGAAACTGGAAAACTACGAGCAATATGTACGTGCAAACCTGGAAGAATACCCGTATATATCGGCCGCCAGGAT
ACATGACTGGCTGAAGGAATGCTATCCGGACTTCCCCCGTGTATGTAACAGAACCATATCCGGTTTCGTGGAAAGGGTACGCAAAAAATACGGCATCGGG
AAAAAGGTTGAAACGCATAAGCGAAACTACGAGAAGCAGCCTGATACTCCCTACGGGGAATACGCACAGGCGGATTTTGGGGAGAAATGTATGCGCACTG
AAAACGGGAAGTCCATCAAAGTGTACTTCTTTGCTATTGTCCTGTCCCGTTCACGATATAAATTTATCTATTTTAGCCGGAGGCCCTTTGACACCGGGCT
TGCGGTTTATGCCCATGAACTTGCCTTCGAATACTTCGGAGGCAGGCCGCAAAAGATCATTTACGACCAGGATAAAGTACTTATAGCACGGGCGAACATG
GGGGATTTGATACTGACCGGCAAATTTCAGGCATTTGTAAAAGAGCAGCATTTCCATCCCGTGTTCTGTCACAAGGCCGATCCGGAGTCAAAGGGGAGGG
TAGAGAATGTTGTGAAATATGTGAAGACGAATTTCCTCACGGCACGTATTTTTCAGAATGTAGACAGACTTAATGAAGAAGCACGTCTCTGGCTTGAAAG
AACGGGAAACGGGAAGGAATATGGTACCACACACCGGATTCCCCTTGAGGAATTTGCACAGGAAAGAGAATACCTTGTACCCTATCACGGTACTCCGCAC
TCACCCGGTGGAGAAATGAAGGAATATCATGTACGTAAAGACAATACCGTACAGTACAGGGGAAACTACTATAGCCTGCCATGCGGAACCTATCGGGGAG
GAGAAACGACAGTATGGCTCCATGAAACAGACGGATGCCTGGAACTTTATAATAAGGAGACGGGAAAGCTTGTCTGCCGGCATGATCTGTGCGAACTCAA
GGGAAAGACTATCTATGGTGAAGGACACAGAAGGCAAAGAAATATCGGAGCACAAAAGCTGGCTGAACGCATTCTTATCTATGTATCGTACAATAGAGAG
GTCGCCTTATGGCTTGAGAACCTGCAGAGAAGGAAGGAACGTTATTACAGGGAGAATCTGGAGGTAATTCTACGCATAATTCCCGGATATGACAAAGCCA
TCCTGACAGAAGCGGTTAGTGTATGTCTGGACAAGGGAATCTATAATGGTGAGTCCGTTAAAAGCCTGTGCGGACATATATGGAAGAAGAAAATGAGAGA
ATCGGATGTAGGAAAAAATCCTGCTTCCCGGACACAGTCAACCGGATTGGTAAAAACATATAATGAAATCTTTAGAAACAATGGCAAGGTATAAGAAAGA
ACTGACCGAATGTGCCCGCAACCTGAAGCTGCCATTCCTGGCAGAACACCTGGATGAAATACTACATGAAGCACAGGAAAAGCAACAGACTTACTCCGAG
TTTCTGTCAACTTGTCTGATGCGGGAACTTCGGGACAAGGAAAGGAGAAGTTATCTGACCAGGTTGAAATTTGCAGGATTGCCTGCAAGGTATGATCTGG
ATCTATATGATTTCTCACGTACCGAAGGGATTGACCAAAGGCAGATGCGCGAATTGCGTGAACTGGTATGGATAAGAAGGACATATAATCTTCTGCTGGT
AGGAGATTCCGGAACCGGAAAGACATTCATTGCTTCAGGACTTATCCATGAAGCAGTGAAAGCGGGTTATAAGGCATACCTGCTGACCTTGGAAGAACTG
TTTGTCTGTTTGAAGACTAAGGAGATATCACGACCCGCGATGAAAACATACAAACGAATAATGAAAGCGCAGCTGCTGGCAATCGATGATGTTACGCTGT
TTCCCCTGAAAGGAGAAGATGTACTGCTACTGTTTAAACTGGTGAATTGCGTTCAAGGTAAGACATCACTTATCATTACCGCAAGCCGGGATCTTACCGG
ATGGCTGGAGATGGCAGGAGACGAAGTTTGTGCGGCAGCTCTACTGGACAGACTACTCTATTGTTGTGAGATAATCAGGCTATCAGGAAAAAGCTACCGC
ATGGAAAACAGGAAAACAATTTTTAGCAATCAACAGATAGGGACTGCATCTTAAAAAAAAGTTAATGAAAGTAAAGAAGAGAACTAAGGAAAGTGGATAC
TGTTAAATTGCACAAAAAAGGGACCTGTAAATTTGCTCGGTACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1560 bp | 519 aa | 135 | 1694 | + | No |
Chemistry : DDE
ORF sequence :
MEIRKQYFKEKQYMWHKVRELQLKGLNKTQIGIYLGVNRKTVRRYLNMTMEEFVKKQSSHRKYRLKLENYEQYVRANLEEYPYISAARIHDWLKECYPDF
PRVCNRTISGFVERVRKKYGIGKKVETHKRNYEKQPDTPYGEYAQADFGEKCMRTENGKSIKVYFFAIVLSRSRYKFIYFSRRPFDTGLAVYAHELAFEY
FGGRPQKIIYDQDKVLIARANMGDLILTGKFQAFVKEQHFHPVFCHKADPESKGRVENVVKYVKTNFLTARIFQNVDRLNEEARLWLERTGNGKEYGTTH
RIPLEEFAQEREYLVPYHGTPHSPGGEMKEYHVRKDNTVQYRGNYYSLPCGTYRGGETTVWLHETDGCLELYNKETGKLVCRHDLCELKGKTIYGEGHRR
QRNIGAQKLAERILIYVSYNREVALWLENLQRRKERYYRENLEVILRIIPGYDKAILTEAVSVCLDKGIYNGESVKSLCGHIWKKKMRESDVGKNPASRT
QSTGLVKTYNEIFRNNGKV
PRVCNRTISGFVERVRKKYGIGKKVETHKRNYEKQPDTPYGEYAQADFGEKCMRTENGKSIKVYFFAIVLSRSRYKFIYFSRRPFDTGLAVYAHELAFEY
FGGRPQKIIYDQDKVLIARANMGDLILTGKFQAFVKEQHFHPVFCHKADPESKGRVENVVKYVKTNFLTARIFQNVDRLNEEARLWLERTGNGKEYGTTH
RIPLEEFAQEREYLVPYHGTPHSPGGEMKEYHVRKDNTVQYRGNYYSLPCGTYRGGETTVWLHETDGCLELYNKETGKLVCRHDLCELKGKTIYGEGHRR
QRNIGAQKLAERILIYVSYNREVALWLENLQRRKERYYRENLEVILRIIPGYDKAILTEAVSVCLDKGIYNGESVKSLCGHIWKKKMRESDVGKNPASRT
QSTGLVKTYNEIFRNNGKV
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
792 bp | 263 aa | 1663 | 2454 | + | No |
AG : IS21 helper
ORF sequence :
MKSLETMARYKKELTECARNLKLPFLAEHLDEILHEAQEKQQTYSEFLSTCLMRELRDKERRSYLTRLKFAGLPARYDLDLYDFSRTEGIDQRQMRELRE
LVWIRRTYNLLLVGDSGTGKTFIASGLIHEAVKAGYKAYLLTLEELFVCLKTKEISRPAMKTYKRIMKAQLLAIDDVTLFPLKGEDVLLLFKLVNCVQGK
TSLIITASRDLTGWLEMAGDEVCAAALLDRLLYCCEIIRLSGKSYRMENRKTIFSNQQIGTAS
LVWIRRTYNLLLVGDSGTGKTFIASGLIHEAVKAGYKAYLLTLEELFVCLKTKEISRPAMKTYKRIMKAQLLAIDDVTLFPLKGEDVLLLFKLVNCVQGK
TSLIITASRDLTGWLEMAGDEVCAAALLDRLLYCCEIIRLSGKSYRMENRKTIFSNQQIGTAS
Blast result :
Comments
The first founded ISBf2 sequence (U05886) is located 50 bp upstream the translation start codon of cepA, a chromosomal cephalosporinase gene, whose high expression level is apparently driven by an ISBf2 outward promoter.
June 20 2012 : This sequence will be replaced by the most closely related (98% DNA identity).
June 20 2012 : This sequence will be replaced by the most closely related (98% DNA identity).
References
1] Rogers, M.B., Bennette, T.K., Payne, C.M., and Smith, C.J. (1994) J. Bacteriol. 176, 4376-4384.
2] Kuwahara,T., Yamashita,A., Hirakawa,H., Nakayama,H., Toh,H., Okada,N., Kuhara,S., Hattori,M., Hayashi,T. and Ohnishi,Y. (2004) Proc. Natl. Acad. Sci. U.S.A. 101 (41), 14919-14924
2] Kuwahara,T., Yamashita,A., Hirakawa,H., Nakayama,H., Toh,H., Okada,N., Kuhara,S., Hattori,M., Hayashi,T. and Ohnishi,Y. (2004) Proc. Natl. Acad. Sci. U.S.A. 101 (41), 14919-14924