ISGaba1
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MGYZ01000032 | ND | Gammaproteobacteria bacterium | Gammaproteobacteria bacterium RIFOXYA12 |
DNA section
IS Length : 1046 bp
Ends
IR Length : 20/22
IRL : CCTGATTAGCAAGATACTCCAGTACGCATCCCACACTCTCGCCGGAAGGT
IRR : CCTGATTAGCAAGATACCTCAGCTTGGCGGAGCCACTGCTCAGGGTGTGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGTATATTCA | AAGAATTA | ACTGGGAATC | 8 |
DNA sequence
CCTGATTAGCAAGATACTCCAGTACGCATCCCACACTCTCGCCGGAAGGTCCATACTGAGGGTGTAGCCACCCCGGAGGAAGCAGCCATGTCGATGAACC
GCATACAATTTCAGCCGGGTCTGTCGCTCCCCGCGTTTCTCGAACAGTTCGGCACCGAGGCGCAGTGCGAGGCGGCGTTGGAAAAGGCGCGCTGGCCACA
AGGTTTTCGTTGTCCCCACTGTGGCGAGGCGCATCACAGCCTGTTCCGGGTTGGCGCGCGCAAGATCTTCCAATGCCGCGCGTGCCGGACGCAGACCTCC
CTGATCGCCGGGACCCTGTTCCAGCACAGCCACTTGGCGCCGACCCTCTGGTTCCTGGCGATCTACCGGATCAGCCAAGCCAAAACAGGCCTGTCCGCCC
TCGCGCTGAAGCGGGAATTGGGGGTCAGCTACCCCACAGCCTGGCTGCTCCAGCACAAGCTGATGCAGGCCATGGTCGAACGCGATGCGCGCTACCCGCT
GCTCGGCGAAGTCCAGGTGGATGACGCCTATCTCGGTGGTGAACGATCCGGCGGCAAGGCCGGGCGCGGGTCCGAGAACAAGGTTCCCTTTGTCGCGGCG
GTCGGGTTGGATGCCGAAGGGCATCCCCGGTACGTCAAAATGGCCCTCGTCCCCGCCTTCACTCGCCAGGCCATTGCCGACTGGGCCAAGGTCGACCTCA
GCCCTGGATGCCGGGTGATCTCCGACGGACTGGCCTGCTTTACCGGGGTGCTCGATGCCGGTTGCCAACACCAGCCCATCATCGTGGGCGCCCGCAAGCC
CAGGGAACTGCCGGAGTTCAGTTGGATCAACACCCTCCTCGGCAACCTCAAGACCAGCTTCGGCGGCGCTTACCATGCCTTCGACTTCGCCAAGTACGGC
TCGCGCTATCTGGGCGCGTTCGCCTATCGCTTCAACCGCCGTTTCCACCTGGAGACACTCCCAATGCGCCTGCTCGCCGCCGCTGCCTCCAGCGGGCCAC
ACCCTGAGCAGTGGCTCCGCCAAGCTGAGGTATCTTGCTAATCAGG
GCATACAATTTCAGCCGGGTCTGTCGCTCCCCGCGTTTCTCGAACAGTTCGGCACCGAGGCGCAGTGCGAGGCGGCGTTGGAAAAGGCGCGCTGGCCACA
AGGTTTTCGTTGTCCCCACTGTGGCGAGGCGCATCACAGCCTGTTCCGGGTTGGCGCGCGCAAGATCTTCCAATGCCGCGCGTGCCGGACGCAGACCTCC
CTGATCGCCGGGACCCTGTTCCAGCACAGCCACTTGGCGCCGACCCTCTGGTTCCTGGCGATCTACCGGATCAGCCAAGCCAAAACAGGCCTGTCCGCCC
TCGCGCTGAAGCGGGAATTGGGGGTCAGCTACCCCACAGCCTGGCTGCTCCAGCACAAGCTGATGCAGGCCATGGTCGAACGCGATGCGCGCTACCCGCT
GCTCGGCGAAGTCCAGGTGGATGACGCCTATCTCGGTGGTGAACGATCCGGCGGCAAGGCCGGGCGCGGGTCCGAGAACAAGGTTCCCTTTGTCGCGGCG
GTCGGGTTGGATGCCGAAGGGCATCCCCGGTACGTCAAAATGGCCCTCGTCCCCGCCTTCACTCGCCAGGCCATTGCCGACTGGGCCAAGGTCGACCTCA
GCCCTGGATGCCGGGTGATCTCCGACGGACTGGCCTGCTTTACCGGGGTGCTCGATGCCGGTTGCCAACACCAGCCCATCATCGTGGGCGCCCGCAAGCC
CAGGGAACTGCCGGAGTTCAGTTGGATCAACACCCTCCTCGGCAACCTCAAGACCAGCTTCGGCGGCGCTTACCATGCCTTCGACTTCGCCAAGTACGGC
TCGCGCTATCTGGGCGCGTTCGCCTATCGCTTCAACCGCCGTTTCCACCTGGAGACACTCCCAATGCGCCTGCTCGCCGCCGCTGCCTCCAGCGGGCCAC
ACCCTGAGCAGTGGCTCCGCCAAGCTGAGGTATCTTGCTAATCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
954 bp | 317 aa | 88 | 1041 | + | No |
Chemistry : DDE
ORF sequence :
MSMNRIQFQPGLSLPAFLEQFGTEAQCEAALEKARWPQGFRCPHCGEAHHSLFRVGARKIFQCRACRTQTSLIAGTLFQHSHLAPTLWFLAIYRISQAKT
GLSALALKRELGVSYPTAWLLQHKLMQAMVERDARYPLLGEVQVDDAYLGGERSGGKAGRGSENKVPFVAAVGLDAEGHPRYVKMALVPAFTRQAIADWA
KVDLSPGCRVISDGLACFTGVLDAGCQHQPIIVGARKPRELPEFSWINTLLGNLKTSFGGAYHAFDFAKYGSRYLGAFAYRFNRRFHLETLPMRLLAAAA
SSGPHPEQWLRQAEVSC
GLSALALKRELGVSYPTAWLLQHKLMQAMVERDARYPLLGEVQVDDAYLGGERSGGKAGRGSENKVPFVAAVGLDAEGHPRYVKMALVPAFTRQAIADWA
KVDLSPGCRVISDGLACFTGVLDAGCQHQPIIVGARKPRELPEFSWINTLLGNLKTSFGGAYHAFDFAKYGSRYLGAFAYRFNRRFHLETLPMRLLAAAA
SSGPHPEQWLRQAEVSC
Blast result :
Comments
ISGaba1 is 77% aa similar to ISMko1.
References
1] ISfinder annotation (2017)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.