ISGaba1

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MGYZ01000032 ND Gammaproteobacteria bacterium
Gammaproteobacteria bacterium RIFOXYA12
DNA section
IS Length : 1046 bp

Ends


IR Length : 20/22

IRL : CCTGATTAGCAAGATACTCCAGTACGCATCCCACACTCTCGCCGGAAGGT
IRR : CCTGATTAGCAAGATACCTCAGCTTGGCGGAGCCACTGCTCAGGGTGTGG

Insertion site


Left flankDirect repeatRight flankDR Length
GGTATATTCAAAGAATTAACTGGGAATC8

DNA sequence

CCTGATTAGCAAGATACTCCAGTACGCATCCCACACTCTCGCCGGAAGGTCCATACTGAGGGTGTAGCCACCCCGGAGGAAGCAGCCATGTCGATGAACC
GCATACAATTTCAGCCGGGTCTGTCGCTCCCCGCGTTTCTCGAACAGTTCGGCACCGAGGCGCAGTGCGAGGCGGCGTTGGAAAAGGCGCGCTGGCCACA
AGGTTTTCGTTGTCCCCACTGTGGCGAGGCGCATCACAGCCTGTTCCGGGTTGGCGCGCGCAAGATCTTCCAATGCCGCGCGTGCCGGACGCAGACCTCC
CTGATCGCCGGGACCCTGTTCCAGCACAGCCACTTGGCGCCGACCCTCTGGTTCCTGGCGATCTACCGGATCAGCCAAGCCAAAACAGGCCTGTCCGCCC
TCGCGCTGAAGCGGGAATTGGGGGTCAGCTACCCCACAGCCTGGCTGCTCCAGCACAAGCTGATGCAGGCCATGGTCGAACGCGATGCGCGCTACCCGCT
GCTCGGCGAAGTCCAGGTGGATGACGCCTATCTCGGTGGTGAACGATCCGGCGGCAAGGCCGGGCGCGGGTCCGAGAACAAGGTTCCCTTTGTCGCGGCG
GTCGGGTTGGATGCCGAAGGGCATCCCCGGTACGTCAAAATGGCCCTCGTCCCCGCCTTCACTCGCCAGGCCATTGCCGACTGGGCCAAGGTCGACCTCA
GCCCTGGATGCCGGGTGATCTCCGACGGACTGGCCTGCTTTACCGGGGTGCTCGATGCCGGTTGCCAACACCAGCCCATCATCGTGGGCGCCCGCAAGCC
CAGGGAACTGCCGGAGTTCAGTTGGATCAACACCCTCCTCGGCAACCTCAAGACCAGCTTCGGCGGCGCTTACCATGCCTTCGACTTCGCCAAGTACGGC
TCGCGCTATCTGGGCGCGTTCGCCTATCGCTTCAACCGCCGTTTCCACCTGGAGACACTCCCAATGCGCCTGCTCGCCGCCGCTGCCTCCAGCGGGCCAC
ACCCTGAGCAGTGGCTCCGCCAAGCTGAGGTATCTTGCTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
954 bp317 aa881041+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSMNRIQFQPGLSLPAFLEQFGTEAQCEAALEKARWPQGFRCPHCGEAHHSLFRVGARKIFQCRACRTQTSLIAGTLFQHSHLAPTLWFLAIYRISQAKT
GLSALALKRELGVSYPTAWLLQHKLMQAMVERDARYPLLGEVQVDDAYLGGERSGGKAGRGSENKVPFVAAVGLDAEGHPRYVKMALVPAFTRQAIADWA
KVDLSPGCRVISDGLACFTGVLDAGCQHQPIIVGARKPRELPEFSWINTLLGNLKTSFGGAYHAFDFAKYGSRYLGAFAYRFNRRFHLETLPMRLLAAAA
SSGPHPEQWLRQAEVSC

 

Blast result :
Comments
ISGaba1 is 77% aa similar to ISMko1.
References
1] ISfinder annotation (2017)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.