ISThio2

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JH603170 ND Thiorhodovibrio sp.
Thiorhodovibrio sp. 970
DNA section
IS Length : 1056 bp

Ends


IR Length : 25

IRL : CCTGATTAGCAAGCAGCCTCAGCCGAGCAAGAAAAACGACGCCAGCATGA
IRR : CCTGATTAGCAAGCAGCCTCAGCCGCGCGAAGCCACCGCTGCGGTCGTGC

Insertion site


Left flankDirect repeatRight flankDR Length
GTTTACTTATCATTGATATATCCTGTCATGCTGCCATTCG0

DNA sequence

CCTGATTAGCAAGCAGCCTCAGCCGAGCAAGAAAAACGACGCCAGCATGAAAAAAAGCGCACACTGGGTTTCCTCCTCTCATTTCAGGACCAAGCGCATG
CCGATGAATCGCGTTCAATTCCAGCCCGGGCTGTCACTGCCGGCCTTTCTCGCGCAATTCGGCACCGAAGCGCAGTGCCAGAGTGCCCTGGAGCAGGCGC
GTTGGCCCGAGGGGTTCCGCTGCCCTGAGTGCGGCCATGCCCATGCTTACATTCTCCAAGGCGGCACCCACAAAATCTTCCAATGCCAGGGCTGTCGCAA
GCAAACCTCGCTGATCGCAGGCACCCTATTTCACAGCACCCATTTGGAACTGACGGTTTGGTTTCTGGCGATCTATCTCATTAGTCAGGCCAAGACGGGC
TTGTCCGCTTTGGCGCTGAAGCGCCAACTCGGTGTCAGTTATCCCACCGCTTGGCTGATCCAGCACAAGCTCATGCAGGCAATGAGCGAGCGCGACAATG
CCTACACCCTTGCCGGGGATGTTCAAGTCGATGATGTCTACCTGGGCGGGGAGCTGACTGGCGGCAAGGCCGGACGCGGCTCGGAGAACAAAGTGCCCTT
CGTTGCGGCCGTCTCACTGACGCCAGAGGGCCATCCGCAGTACGCGAAGATGACGCCCGTGGCGGGGTTCACGCGCAAGGCCATTGCCGAGTGGACGGCT
AGCAATCTGAGTCCTGGTTGCCTGGTCACCTCCGATGGGCTGGCTTGCTTCAACGGTGTCACCGATGCCGGCTGTCTGCACAATGCCATTGTGGTAGGCG
CGCGCAAACCCAAGGATCTGCCGGAATTCAATTGGATCAATACCATTCTGGGCAATCTCAAGACCAGCTTTGGTGGGGCATACCACGCCTTTGATTTCGA
CAAATACGCCAGCCGTTATCTCGGCACATTCGCCTACCGGTTTAATCGCCGCTTCCATCTAGACACCATTCACAACCGCCTGCTCGTCGCAGCGGCCACA
ATCGGAGCACGACCGCAGCGGTGGCTTCGCGCGGCTGAGGCTGCTTGCTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
954 bp317 aa981051+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPMNRVQFQPGLSLPAFLAQFGTEAQCQSALEQARWPEGFRCPECGHAHAYILQGGTHKIFQCQGCRKQTSLIAGTLFHSTHLELTVWFLAIYLISQAKT
GLSALALKRQLGVSYPTAWLIQHKLMQAMSERDNAYTLAGDVQVDDVYLGGELTGGKAGRGSENKVPFVAAVSLTPEGHPQYAKMTPVAGFTRKAIAEWT
ASNLSPGCLVTSDGLACFNGVTDAGCLHNAIVVGARKPKDLPEFNWINTILGNLKTSFGGAYHAFDFDKYASRYLGTFAYRFNRRFHLDTIHNRLLVAAA
TIGARPQRWLRAAEAAC

 

Blast result :
Comments
ISThio2 is 78% aa similar to ISCap3.
References
1] ISfinder annotation (2017)
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Zhang,X., Detter,J.C., Han,C.,
Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Vogl,K., Liu,Z., Overmann,J., Frigaard,N.-U., Bryant,D. and Woyke,T. (2011) Direct GenBank submission.