ISThio2
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JH603170 | ND | Thiorhodovibrio sp. | Thiorhodovibrio sp. 970 |
DNA section
IS Length : 1056 bp
Ends
IR Length : 25
IRL : CCTGATTAGCAAGCAGCCTCAGCCGAGCAAGAAAAACGACGCCAGCATGA
IRR : CCTGATTAGCAAGCAGCCTCAGCCGCGCGAAGCCACCGCTGCGGTCGTGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTTTACTTATCATTGATATA | TCCTGTCATGCTGCCATTCG | 0 |
DNA sequence
CCTGATTAGCAAGCAGCCTCAGCCGAGCAAGAAAAACGACGCCAGCATGAAAAAAAGCGCACACTGGGTTTCCTCCTCTCATTTCAGGACCAAGCGCATG
CCGATGAATCGCGTTCAATTCCAGCCCGGGCTGTCACTGCCGGCCTTTCTCGCGCAATTCGGCACCGAAGCGCAGTGCCAGAGTGCCCTGGAGCAGGCGC
GTTGGCCCGAGGGGTTCCGCTGCCCTGAGTGCGGCCATGCCCATGCTTACATTCTCCAAGGCGGCACCCACAAAATCTTCCAATGCCAGGGCTGTCGCAA
GCAAACCTCGCTGATCGCAGGCACCCTATTTCACAGCACCCATTTGGAACTGACGGTTTGGTTTCTGGCGATCTATCTCATTAGTCAGGCCAAGACGGGC
TTGTCCGCTTTGGCGCTGAAGCGCCAACTCGGTGTCAGTTATCCCACCGCTTGGCTGATCCAGCACAAGCTCATGCAGGCAATGAGCGAGCGCGACAATG
CCTACACCCTTGCCGGGGATGTTCAAGTCGATGATGTCTACCTGGGCGGGGAGCTGACTGGCGGCAAGGCCGGACGCGGCTCGGAGAACAAAGTGCCCTT
CGTTGCGGCCGTCTCACTGACGCCAGAGGGCCATCCGCAGTACGCGAAGATGACGCCCGTGGCGGGGTTCACGCGCAAGGCCATTGCCGAGTGGACGGCT
AGCAATCTGAGTCCTGGTTGCCTGGTCACCTCCGATGGGCTGGCTTGCTTCAACGGTGTCACCGATGCCGGCTGTCTGCACAATGCCATTGTGGTAGGCG
CGCGCAAACCCAAGGATCTGCCGGAATTCAATTGGATCAATACCATTCTGGGCAATCTCAAGACCAGCTTTGGTGGGGCATACCACGCCTTTGATTTCGA
CAAATACGCCAGCCGTTATCTCGGCACATTCGCCTACCGGTTTAATCGCCGCTTCCATCTAGACACCATTCACAACCGCCTGCTCGTCGCAGCGGCCACA
ATCGGAGCACGACCGCAGCGGTGGCTTCGCGCGGCTGAGGCTGCTTGCTAATCAGG
CCGATGAATCGCGTTCAATTCCAGCCCGGGCTGTCACTGCCGGCCTTTCTCGCGCAATTCGGCACCGAAGCGCAGTGCCAGAGTGCCCTGGAGCAGGCGC
GTTGGCCCGAGGGGTTCCGCTGCCCTGAGTGCGGCCATGCCCATGCTTACATTCTCCAAGGCGGCACCCACAAAATCTTCCAATGCCAGGGCTGTCGCAA
GCAAACCTCGCTGATCGCAGGCACCCTATTTCACAGCACCCATTTGGAACTGACGGTTTGGTTTCTGGCGATCTATCTCATTAGTCAGGCCAAGACGGGC
TTGTCCGCTTTGGCGCTGAAGCGCCAACTCGGTGTCAGTTATCCCACCGCTTGGCTGATCCAGCACAAGCTCATGCAGGCAATGAGCGAGCGCGACAATG
CCTACACCCTTGCCGGGGATGTTCAAGTCGATGATGTCTACCTGGGCGGGGAGCTGACTGGCGGCAAGGCCGGACGCGGCTCGGAGAACAAAGTGCCCTT
CGTTGCGGCCGTCTCACTGACGCCAGAGGGCCATCCGCAGTACGCGAAGATGACGCCCGTGGCGGGGTTCACGCGCAAGGCCATTGCCGAGTGGACGGCT
AGCAATCTGAGTCCTGGTTGCCTGGTCACCTCCGATGGGCTGGCTTGCTTCAACGGTGTCACCGATGCCGGCTGTCTGCACAATGCCATTGTGGTAGGCG
CGCGCAAACCCAAGGATCTGCCGGAATTCAATTGGATCAATACCATTCTGGGCAATCTCAAGACCAGCTTTGGTGGGGCATACCACGCCTTTGATTTCGA
CAAATACGCCAGCCGTTATCTCGGCACATTCGCCTACCGGTTTAATCGCCGCTTCCATCTAGACACCATTCACAACCGCCTGCTCGTCGCAGCGGCCACA
ATCGGAGCACGACCGCAGCGGTGGCTTCGCGCGGCTGAGGCTGCTTGCTAATCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
954 bp | 317 aa | 98 | 1051 | + | No |
Chemistry : DDE
ORF sequence :
MPMNRVQFQPGLSLPAFLAQFGTEAQCQSALEQARWPEGFRCPECGHAHAYILQGGTHKIFQCQGCRKQTSLIAGTLFHSTHLELTVWFLAIYLISQAKT
GLSALALKRQLGVSYPTAWLIQHKLMQAMSERDNAYTLAGDVQVDDVYLGGELTGGKAGRGSENKVPFVAAVSLTPEGHPQYAKMTPVAGFTRKAIAEWT
ASNLSPGCLVTSDGLACFNGVTDAGCLHNAIVVGARKPKDLPEFNWINTILGNLKTSFGGAYHAFDFDKYASRYLGTFAYRFNRRFHLDTIHNRLLVAAA
TIGARPQRWLRAAEAAC
GLSALALKRQLGVSYPTAWLIQHKLMQAMSERDNAYTLAGDVQVDDVYLGGELTGGKAGRGSENKVPFVAAVSLTPEGHPQYAKMTPVAGFTRKAIAEWT
ASNLSPGCLVTSDGLACFNGVTDAGCLHNAIVVGARKPKDLPEFNWINTILGNLKTSFGGAYHAFDFDKYASRYLGTFAYRFNRRFHLDTIHNRLLVAAA
TIGARPQRWLRAAEAAC
Blast result :
Comments
ISThio2 is 78% aa similar to ISCap3.
References
1] ISfinder annotation (2017)
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Zhang,X., Detter,J.C., Han,C.,
Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Vogl,K., Liu,Z., Overmann,J., Frigaard,N.-U., Bryant,D. and Woyke,T. (2011) Direct GenBank submission.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Zhang,X., Detter,J.C., Han,C.,
Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Vogl,K., Liu,Z., Overmann,J., Frigaard,N.-U., Bryant,D. and Woyke,T. (2011) Direct GenBank submission.