ISBuba2
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MKUQ01000044 | ND | Burkholderiales bacterium | Burkholderiales bacterium 70-64 |
DNA section
IS Length : 1053 bp
Ends
IR Length : 22/24
IRL : CCTGATTAGTGACATACCTCAGCCCCGCCCGTGGAGGCTCACCTGGTGAG
IRR : CTTGATTAGCGACATACCTCAGCCGCCCGAATGAACCGAGCGGGCCGAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTCAAAAACA | TAGTCGGT | AGACAGATCG | 8 |
DNA sequence
CCTGATTAGTGACATACCTCAGCCCCGCCCGTGGAGGCTCACCTGGTGAGCCAGTGAGTGCCGAGGATCGGTTCACCGCGACAGGAGGTGAACCATGGCG
ATGAACCGAGTGCAGTTTCAACCTGGACTTTCGATGGCGCAGTTTCTCGATCGATACGGCAGCGAAGACCAGTGCGAGACAGCACTGATCGCCTCGCGCT
GGCCCCAAGGATTCGTGTGCCCGGAGTGCGGCTCGGGCGAGAACAGTTCGTTCAGACGTGAGGGACGGCTGTACTGGCAGTGCTCGGCGTGTCGCCACCA
ATGCAGCGTCATCAGCGGCACGGTCTTCGAGGCGACCAAGTTGCCGCTGACGCGCTGGTTCCTCGCCATGCACCTGCTCACCCAGTCCAAGAACAACGTC
GCCGCACTCGAACTCATGCGCCACCTGGGGGTTTGCTACAAGACCGCCTGGCTCATCAAGCACAAGCTGATGGAGGTCATGCGTGTGCGCGAGGACGCGC
GTGTGCTCGATGGGCGGGTGGAGATCGATGACGCCTACCTGGGAGGGGAACTCCCAGGCGGCAAGACAGGGCGCGGCTCCGAGAACAAGGTGCCGTTCCT
CGCAGCCGTGCAGACCACGCCCGACGGACAACCGCAGTTCGCCTGCTTCGCCCCGCAGCCGTTCACCACCGAAGCAGTGGCGGCCTGGGCGGCCAAGTCG
CTGGCGACCTCGGCCACCGTAGTGTCCGACGGTCTGTGGTGCTTCGGCGGCGTGAAGATCATCGGCGCCCAGCATGAGCGCACCGTCACCGGCGGCGGCG
CGGCCAGCACCAAGCTGCCACAGTTCAAGGCAATCAACACACTGTTGGGCAACCTGAAGAACGCGCTCGCAGGCACCTACCACGCTTTCGACTTCACCAA
GTACGCCCATCGCTACCTCGCTGAGGCCCAGTACCGATTCAACCGTCGCTTCAATCTCACCTCCATCTTGGCTCGCTTGCTGCGCGCCGCCTCCGTCACT
TCGCCTCGGCCCGCTCGGTTCATTCGGGCGGCTGAGGTATGTCGCTAATCAAG
ATGAACCGAGTGCAGTTTCAACCTGGACTTTCGATGGCGCAGTTTCTCGATCGATACGGCAGCGAAGACCAGTGCGAGACAGCACTGATCGCCTCGCGCT
GGCCCCAAGGATTCGTGTGCCCGGAGTGCGGCTCGGGCGAGAACAGTTCGTTCAGACGTGAGGGACGGCTGTACTGGCAGTGCTCGGCGTGTCGCCACCA
ATGCAGCGTCATCAGCGGCACGGTCTTCGAGGCGACCAAGTTGCCGCTGACGCGCTGGTTCCTCGCCATGCACCTGCTCACCCAGTCCAAGAACAACGTC
GCCGCACTCGAACTCATGCGCCACCTGGGGGTTTGCTACAAGACCGCCTGGCTCATCAAGCACAAGCTGATGGAGGTCATGCGTGTGCGCGAGGACGCGC
GTGTGCTCGATGGGCGGGTGGAGATCGATGACGCCTACCTGGGAGGGGAACTCCCAGGCGGCAAGACAGGGCGCGGCTCCGAGAACAAGGTGCCGTTCCT
CGCAGCCGTGCAGACCACGCCCGACGGACAACCGCAGTTCGCCTGCTTCGCCCCGCAGCCGTTCACCACCGAAGCAGTGGCGGCCTGGGCGGCCAAGTCG
CTGGCGACCTCGGCCACCGTAGTGTCCGACGGTCTGTGGTGCTTCGGCGGCGTGAAGATCATCGGCGCCCAGCATGAGCGCACCGTCACCGGCGGCGGCG
CGGCCAGCACCAAGCTGCCACAGTTCAAGGCAATCAACACACTGTTGGGCAACCTGAAGAACGCGCTCGCAGGCACCTACCACGCTTTCGACTTCACCAA
GTACGCCCATCGCTACCTCGCTGAGGCCCAGTACCGATTCAACCGTCGCTTCAATCTCACCTCCATCTTGGCTCGCTTGCTGCGCGCCGCCTCCGTCACT
TCGCCTCGGCCCGCTCGGTTCATTCGGGCGGCTGAGGTATGTCGCTAATCAAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
954 bp | 317 aa | 95 | 1048 | + | No |
Chemistry : DDE
ORF sequence :
MAMNRVQFQPGLSMAQFLDRYGSEDQCETALIASRWPQGFVCPECGSGENSSFRREGRLYWQCSACRHQCSVISGTVFEATKLPLTRWFLAMHLLTQSKN
NVAALELMRHLGVCYKTAWLIKHKLMEVMRVREDARVLDGRVEIDDAYLGGELPGGKTGRGSENKVPFLAAVQTTPDGQPQFACFAPQPFTTEAVAAWAA
KSLATSATVVSDGLWCFGGVKIIGAQHERTVTGGGAASTKLPQFKAINTLLGNLKNALAGTYHAFDFTKYAHRYLAEAQYRFNRRFNLTSILARLLRAAS
VTSPRPARFIRAAEVCR
NVAALELMRHLGVCYKTAWLIKHKLMEVMRVREDARVLDGRVEIDDAYLGGELPGGKTGRGSENKVPFLAAVQTTPDGQPQFACFAPQPFTTEAVAAWAA
KSLATSATVVSDGLWCFGGVKIIGAQHERTVTGGGAASTKLPQFKAINTLLGNLKNALAGTYHAFDFTKYAHRYLAEAQYRFNRRFNLTSILARLLRAAS
VTSPRPARFIRAAEVCR
Blast result :
Comments
ISBuba2 is 77% aa similar to ISBeb1.
References
1] ISfinder annotation (2017)
2] Kantor,R.S., Huddy,R.J., Iyer,R., Thomas,B.C., Brown,C.T., Anantharaman,K., Tringe,S., Hettich,R.L., Harrison,S.T. and Banfield,J.F. (2013) Direct GenBank submission.
2] Kantor,R.S., Huddy,R.J., Iyer,R., Thomas,B.C., Brown,C.T., Anantharaman,K., Tringe,S., Hettich,R.L., Harrison,S.T. and Banfield,J.F. (2013) Direct GenBank submission.