ISBuba2

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MKUQ01000044 ND Burkholderiales bacterium
Burkholderiales bacterium 70-64
DNA section
IS Length : 1053 bp

Ends


IR Length : 22/24

IRL : CCTGATTAGTGACATACCTCAGCCCCGCCCGTGGAGGCTCACCTGGTGAG
IRR : CTTGATTAGCGACATACCTCAGCCGCCCGAATGAACCGAGCGGGCCGAGG

Insertion site


Left flankDirect repeatRight flankDR Length
GTCAAAAACATAGTCGGTAGACAGATCG8

DNA sequence

CCTGATTAGTGACATACCTCAGCCCCGCCCGTGGAGGCTCACCTGGTGAGCCAGTGAGTGCCGAGGATCGGTTCACCGCGACAGGAGGTGAACCATGGCG
ATGAACCGAGTGCAGTTTCAACCTGGACTTTCGATGGCGCAGTTTCTCGATCGATACGGCAGCGAAGACCAGTGCGAGACAGCACTGATCGCCTCGCGCT
GGCCCCAAGGATTCGTGTGCCCGGAGTGCGGCTCGGGCGAGAACAGTTCGTTCAGACGTGAGGGACGGCTGTACTGGCAGTGCTCGGCGTGTCGCCACCA
ATGCAGCGTCATCAGCGGCACGGTCTTCGAGGCGACCAAGTTGCCGCTGACGCGCTGGTTCCTCGCCATGCACCTGCTCACCCAGTCCAAGAACAACGTC
GCCGCACTCGAACTCATGCGCCACCTGGGGGTTTGCTACAAGACCGCCTGGCTCATCAAGCACAAGCTGATGGAGGTCATGCGTGTGCGCGAGGACGCGC
GTGTGCTCGATGGGCGGGTGGAGATCGATGACGCCTACCTGGGAGGGGAACTCCCAGGCGGCAAGACAGGGCGCGGCTCCGAGAACAAGGTGCCGTTCCT
CGCAGCCGTGCAGACCACGCCCGACGGACAACCGCAGTTCGCCTGCTTCGCCCCGCAGCCGTTCACCACCGAAGCAGTGGCGGCCTGGGCGGCCAAGTCG
CTGGCGACCTCGGCCACCGTAGTGTCCGACGGTCTGTGGTGCTTCGGCGGCGTGAAGATCATCGGCGCCCAGCATGAGCGCACCGTCACCGGCGGCGGCG
CGGCCAGCACCAAGCTGCCACAGTTCAAGGCAATCAACACACTGTTGGGCAACCTGAAGAACGCGCTCGCAGGCACCTACCACGCTTTCGACTTCACCAA
GTACGCCCATCGCTACCTCGCTGAGGCCCAGTACCGATTCAACCGTCGCTTCAATCTCACCTCCATCTTGGCTCGCTTGCTGCGCGCCGCCTCCGTCACT
TCGCCTCGGCCCGCTCGGTTCATTCGGGCGGCTGAGGTATGTCGCTAATCAAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
954 bp317 aa951048+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAMNRVQFQPGLSMAQFLDRYGSEDQCETALIASRWPQGFVCPECGSGENSSFRREGRLYWQCSACRHQCSVISGTVFEATKLPLTRWFLAMHLLTQSKN
NVAALELMRHLGVCYKTAWLIKHKLMEVMRVREDARVLDGRVEIDDAYLGGELPGGKTGRGSENKVPFLAAVQTTPDGQPQFACFAPQPFTTEAVAAWAA
KSLATSATVVSDGLWCFGGVKIIGAQHERTVTGGGAASTKLPQFKAINTLLGNLKNALAGTYHAFDFTKYAHRYLAEAQYRFNRRFNLTSILARLLRAAS
VTSPRPARFIRAAEVCR

 

Blast result :
Comments
ISBuba2 is 77% aa similar to ISBeb1.
References
1] ISfinder annotation (2017)
2] Kantor,R.S., Huddy,R.J., Iyer,R., Thomas,B.C., Brown,C.T., Anantharaman,K., Tringe,S., Hettich,R.L., Harrison,S.T. and Banfield,J.F. (2013) Direct GenBank submission.