ISPge1
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LLXT01000104 | ND | Pseudomonas geniculata | Pseudomonas geniculata ATCC 19374 Pseudomonas geniculata JCM 13324 |
DNA section
IS Length : 1072 bp
Ends
IR Length : 23/24
IRL : CCTGATTAGCCCCGACCCTCAGCCGCGAGTCGCAGGGTTTGCGCCGCCTG
IRR : CCTGATTAGCCCCGACTCTCAGCCATGAAAGTTGCTCGCAATCCGCAGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGAGCTGTCA | TGCGGGAT | TCGAAGTTTG | 8 |
DNA sequence
CCTGATTAGCCCCGACCCTCAGCCGCGAGTCGCAGGGTTTGCGCCGCCTGCGGCACAGCATGGTGCCACTTGAAGCCAACGAGGCGGCGCCATGGGCATC
AACCGCGTGCAGTTCCAACCCGGCCTTTCGATGAGCGAGTTCATCCACCGCTACGGCACCGAAGCAAAGTGTTACCGGGCCTTGTACAAGTGGCGCTGGC
CTGAAGGTTTCCGCTGTCCGGCCTGTGCCGGACGCGCGCGTTCGCGCTTCAGGCGCGGCGATGCGATCTACTACCAGTGCCGCGCTTGCCGGCATCAGAC
GACCTTGACGGCGGGCACCCTGTTCGAAGGCACCAAACTGCCGCTGCGCACCTGGATGCTGGCGATGCACCTGCTGACCTCGACCAAGACCAACTTGGCT
GCGCTGGAACTGATGCGCCACCTGGGCGTGAACTACAAGACCGCCTGGCGCCTGAAGCACAAGGTCATGCAGGCCATGACCGAGCGGGAGGATTCCAGAA
AACTCCAGGGTTTCGTGCAGCTTGACGACGCCTATCTGGGCGGCGAGCGCAACGGCGGCAAGCCCGGGCGCGGGTCGGAGAACAAGCAGGCGTTCGTGAT
CGCAGTGCAGACGGACGAACACCTCGAACGCCCGACCTTCGCAGTGATCGAGCCGGTCCGCAGCTTCGACAACGCCTCACTCAACGACTGGATCACGCGC
CGCCTGGCACCTGAGTGCGAGGTCTACAGTGACGGCTTGGCTTGCTTCCGCCGGCTCGAAGACGCCGGCCACGCCCACACAACGCTCGACACCGGCGGCG
GCCGCGCCGCCACCGAAGTGGCTGGAGCGCGATGGGTCAACGTCGTCCTGGGCAACCTCAAGCGGGCGATCAGTGGCACCTACCATGCCGTCAAACAAGC
CAAGTATGCGCGGCGCTACCTGGCCGAAGCGGCGTACCGTTTCAACCGCCGGTTCCGCCTGCGCGAGACGCTGCCGCGACTTGCGACCGCGATGATGCGG
TGCAAACCATGTCCGGAGCCGCGTCTGCGGATTGCGAGCAACTTTCATGGCTGAGAGTCGGGGCTAATCAGG
AACCGCGTGCAGTTCCAACCCGGCCTTTCGATGAGCGAGTTCATCCACCGCTACGGCACCGAAGCAAAGTGTTACCGGGCCTTGTACAAGTGGCGCTGGC
CTGAAGGTTTCCGCTGTCCGGCCTGTGCCGGACGCGCGCGTTCGCGCTTCAGGCGCGGCGATGCGATCTACTACCAGTGCCGCGCTTGCCGGCATCAGAC
GACCTTGACGGCGGGCACCCTGTTCGAAGGCACCAAACTGCCGCTGCGCACCTGGATGCTGGCGATGCACCTGCTGACCTCGACCAAGACCAACTTGGCT
GCGCTGGAACTGATGCGCCACCTGGGCGTGAACTACAAGACCGCCTGGCGCCTGAAGCACAAGGTCATGCAGGCCATGACCGAGCGGGAGGATTCCAGAA
AACTCCAGGGTTTCGTGCAGCTTGACGACGCCTATCTGGGCGGCGAGCGCAACGGCGGCAAGCCCGGGCGCGGGTCGGAGAACAAGCAGGCGTTCGTGAT
CGCAGTGCAGACGGACGAACACCTCGAACGCCCGACCTTCGCAGTGATCGAGCCGGTCCGCAGCTTCGACAACGCCTCACTCAACGACTGGATCACGCGC
CGCCTGGCACCTGAGTGCGAGGTCTACAGTGACGGCTTGGCTTGCTTCCGCCGGCTCGAAGACGCCGGCCACGCCCACACAACGCTCGACACCGGCGGCG
GCCGCGCCGCCACCGAAGTGGCTGGAGCGCGATGGGTCAACGTCGTCCTGGGCAACCTCAAGCGGGCGATCAGTGGCACCTACCATGCCGTCAAACAAGC
CAAGTATGCGCGGCGCTACCTGGCCGAAGCGGCGTACCGTTTCAACCGCCGGTTCCGCCTGCGCGAGACGCTGCCGCGACTTGCGACCGCGATGATGCGG
TGCAAACCATGTCCGGAGCCGCGTCTGCGGATTGCGAGCAACTTTCATGGCTGAGAGTCGGGGCTAATCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
963 bp | 320 aa | 92 | 1054 | + | No |
Chemistry : DDE
ORF sequence :
MGINRVQFQPGLSMSEFIHRYGTEAKCYRALYKWRWPEGFRCPACAGRARSRFRRGDAIYYQCRACRHQTTLTAGTLFEGTKLPLRTWMLAMHLLTSTKT
NLAALELMRHLGVNYKTAWRLKHKVMQAMTEREDSRKLQGFVQLDDAYLGGERNGGKPGRGSENKQAFVIAVQTDEHLERPTFAVIEPVRSFDNASLNDW
ITRRLAPECEVYSDGLACFRRLEDAGHAHTTLDTGGGRAATEVAGARWVNVVLGNLKRAISGTYHAVKQAKYARRYLAEAAYRFNRRFRLRETLPRLATA
MMRCKPCPEPRLRIASNFHG
NLAALELMRHLGVNYKTAWRLKHKVMQAMTEREDSRKLQGFVQLDDAYLGGERNGGKPGRGSENKQAFVIAVQTDEHLERPTFAVIEPVRSFDNASLNDW
ITRRLAPECEVYSDGLACFRRLEDAGHAHTTLDTGGGRAATEVAGARWVNVVLGNLKRAISGTYHAVKQAKYARRYLAEAAYRFNRRFRLRETLPRLATA
MMRCKPCPEPRLRIASNFHG
Blast result :
Comments
ISPge1 is 88% aa similar to ISXca4.
References
1] ISfinder annotation (2017)
2] Patil,P.P., Midha,S., Kumar,S. and Patil,P.B. (2016) Front Microbiol. 7, 309.
2] Patil,P.P., Midha,S., Kumar,S. and Patil,P.B. (2016) Front Microbiol. 7, 309.