ISPge1

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LLXT01000104 ND Pseudomonas geniculata
Pseudomonas geniculata ATCC 19374
Pseudomonas geniculata JCM 13324
DNA section
IS Length : 1072 bp

Ends


IR Length : 23/24

IRL : CCTGATTAGCCCCGACCCTCAGCCGCGAGTCGCAGGGTTTGCGCCGCCTG
IRR : CCTGATTAGCCCCGACTCTCAGCCATGAAAGTTGCTCGCAATCCGCAGAC

Insertion site


Left flankDirect repeatRight flankDR Length
GGAGCTGTCATGCGGGATTCGAAGTTTG8

DNA sequence

CCTGATTAGCCCCGACCCTCAGCCGCGAGTCGCAGGGTTTGCGCCGCCTGCGGCACAGCATGGTGCCACTTGAAGCCAACGAGGCGGCGCCATGGGCATC
AACCGCGTGCAGTTCCAACCCGGCCTTTCGATGAGCGAGTTCATCCACCGCTACGGCACCGAAGCAAAGTGTTACCGGGCCTTGTACAAGTGGCGCTGGC
CTGAAGGTTTCCGCTGTCCGGCCTGTGCCGGACGCGCGCGTTCGCGCTTCAGGCGCGGCGATGCGATCTACTACCAGTGCCGCGCTTGCCGGCATCAGAC
GACCTTGACGGCGGGCACCCTGTTCGAAGGCACCAAACTGCCGCTGCGCACCTGGATGCTGGCGATGCACCTGCTGACCTCGACCAAGACCAACTTGGCT
GCGCTGGAACTGATGCGCCACCTGGGCGTGAACTACAAGACCGCCTGGCGCCTGAAGCACAAGGTCATGCAGGCCATGACCGAGCGGGAGGATTCCAGAA
AACTCCAGGGTTTCGTGCAGCTTGACGACGCCTATCTGGGCGGCGAGCGCAACGGCGGCAAGCCCGGGCGCGGGTCGGAGAACAAGCAGGCGTTCGTGAT
CGCAGTGCAGACGGACGAACACCTCGAACGCCCGACCTTCGCAGTGATCGAGCCGGTCCGCAGCTTCGACAACGCCTCACTCAACGACTGGATCACGCGC
CGCCTGGCACCTGAGTGCGAGGTCTACAGTGACGGCTTGGCTTGCTTCCGCCGGCTCGAAGACGCCGGCCACGCCCACACAACGCTCGACACCGGCGGCG
GCCGCGCCGCCACCGAAGTGGCTGGAGCGCGATGGGTCAACGTCGTCCTGGGCAACCTCAAGCGGGCGATCAGTGGCACCTACCATGCCGTCAAACAAGC
CAAGTATGCGCGGCGCTACCTGGCCGAAGCGGCGTACCGTTTCAACCGCCGGTTCCGCCTGCGCGAGACGCTGCCGCGACTTGCGACCGCGATGATGCGG
TGCAAACCATGTCCGGAGCCGCGTCTGCGGATTGCGAGCAACTTTCATGGCTGAGAGTCGGGGCTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
963 bp320 aa921054+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGINRVQFQPGLSMSEFIHRYGTEAKCYRALYKWRWPEGFRCPACAGRARSRFRRGDAIYYQCRACRHQTTLTAGTLFEGTKLPLRTWMLAMHLLTSTKT
NLAALELMRHLGVNYKTAWRLKHKVMQAMTEREDSRKLQGFVQLDDAYLGGERNGGKPGRGSENKQAFVIAVQTDEHLERPTFAVIEPVRSFDNASLNDW
ITRRLAPECEVYSDGLACFRRLEDAGHAHTTLDTGGGRAATEVAGARWVNVVLGNLKRAISGTYHAVKQAKYARRYLAEAAYRFNRRFRLRETLPRLATA
MMRCKPCPEPRLRIASNFHG

 

Blast result :
Comments
ISPge1 is 88% aa similar to ISXca4.
References
1] ISfinder annotation (2017)
2] Patil,P.P., Midha,S., Kumar,S. and Patil,P.B. (2016) Front Microbiol. 7, 309.