ISThy1
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FQUK01000058 | ND | Thermomonas hydrothermalis | Thermomonas hydrothermalis DSM 14834 Pseudomonas aeruginosa PA38182 |
DNA section
IS Length : 1069 bp
Ends
IR Length : 24
IRL : CCTGATTAGCCCCGACCCTCAGCCGCCAGTCGCAGGATGTGCGTCGCCCA
IRR : CCTGATTAGCCCCGACCCTCAGCCATGAAAATTGCTCGCAGCGCGCAAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGGTCGCCGACAAGTCCAAT | NNNN | 0 | |
TATTCATAAGCTA | TTCCTCTT | TACTTCCTACAA | 8 |
DNA sequence
CCTGATTAGCCCCGACCCTCAGCCGCCAGTCGCAGGATGTGCGTCGCCCACCGCCGAGCATACGGCCACCTGAAGGCGACGAGGTGGCGTCATGAGCATC
AATTCCGTGCAGTTCCAGGCTGGCCTGTCCATGGCCGAGTTCATCGCCCGCTACGGCACCGAGGCCAAGTGCTACCGTGCCCTGTACCAGTGGCGTTGGC
CGCAAGGCTTCCGCTGCCCGGCCTGCACTGGACGGGCCCGCTCGCGGTTTCGGCGCGGGACGACGGTCTACTACCAGTGCCGCGCCTGCCGGCACCAGAC
CACGCTGACCGCCGGCACGATGTTCGAGGGCACCAAGCTGCCGCTGCGCACCTGGCTGCTGGCCCTGCACCTGACCGCGACCAAGACCAACCTCGCCGCG
CTGGAGCTGATGCGCCACCTGGGAGTCAACTACAAGACCGCCTGGCGGATGAAGCACAAGATCATGCAGGCCATGGCCGAGCGCGAGGAACCCCGGCGGC
TCAATGGCTTCGTGCAGATCGACGATGCCTACCTCGGCGGCGAGCGCAACGGCGGCAAGCGCGGGCGCGGTGCCGAGGGCAAGCAACCCTTCGTGATCGC
GGTGCAGACCGACGCCCGCTTCGCCGCGCCGAGCCTGGCCGTGATCGAGCCGGTGCGCAGCTTCGACAACGTCTCGCTCGAGGACTGGATCGCACGGCGC
CTGGCGCCCGGATGCGAGACCTATACCGACGGTCTGGCCTGCTTCCGCCGGCTCGAAGACGCCGGCCACGCCCACACCACGCTGGACACCGGCGGCGGCC
GTGCCGCCACCGAGGCGCCGGGCGCGCGTTGGGTGAACGTGCTGCTGGGCAACGTCAAGCGCGCCATCAACGGCACCTACCACGCCATCCGCCAGGCCAA
GTACGCGCGGCGCTACCTGGCCGAAGCCGCCTACCGGTTCAACCGTCGCTTCCGCCTGCATGAGATGCTGCCGCGACTGGCCACCGCCATGCTGCGCTGC
AAGCCTTGCCCCGAGCCGGTCTTGCGCGCTGCGAGCAATTTTCATGGCTGAGGGTCGGGGCTAATCAGG
AATTCCGTGCAGTTCCAGGCTGGCCTGTCCATGGCCGAGTTCATCGCCCGCTACGGCACCGAGGCCAAGTGCTACCGTGCCCTGTACCAGTGGCGTTGGC
CGCAAGGCTTCCGCTGCCCGGCCTGCACTGGACGGGCCCGCTCGCGGTTTCGGCGCGGGACGACGGTCTACTACCAGTGCCGCGCCTGCCGGCACCAGAC
CACGCTGACCGCCGGCACGATGTTCGAGGGCACCAAGCTGCCGCTGCGCACCTGGCTGCTGGCCCTGCACCTGACCGCGACCAAGACCAACCTCGCCGCG
CTGGAGCTGATGCGCCACCTGGGAGTCAACTACAAGACCGCCTGGCGGATGAAGCACAAGATCATGCAGGCCATGGCCGAGCGCGAGGAACCCCGGCGGC
TCAATGGCTTCGTGCAGATCGACGATGCCTACCTCGGCGGCGAGCGCAACGGCGGCAAGCGCGGGCGCGGTGCCGAGGGCAAGCAACCCTTCGTGATCGC
GGTGCAGACCGACGCCCGCTTCGCCGCGCCGAGCCTGGCCGTGATCGAGCCGGTGCGCAGCTTCGACAACGTCTCGCTCGAGGACTGGATCGCACGGCGC
CTGGCGCCCGGATGCGAGACCTATACCGACGGTCTGGCCTGCTTCCGCCGGCTCGAAGACGCCGGCCACGCCCACACCACGCTGGACACCGGCGGCGGCC
GTGCCGCCACCGAGGCGCCGGGCGCGCGTTGGGTGAACGTGCTGCTGGGCAACGTCAAGCGCGCCATCAACGGCACCTACCACGCCATCCGCCAGGCCAA
GTACGCGCGGCGCTACCTGGCCGAAGCCGCCTACCGGTTCAACCGTCGCTTCCGCCTGCATGAGATGCTGCCGCGACTGGCCACCGCCATGCTGCGCTGC
AAGCCTTGCCCCGAGCCGGTCTTGCGCGCTGCGAGCAATTTTCATGGCTGAGGGTCGGGGCTAATCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
960 bp | 319 aa | 92 | 1051 | + | No |
Chemistry : DDE
ORF sequence :
MSINSVQFQAGLSMAEFIARYGTEAKCYRALYQWRWPQGFRCPACTGRARSRFRRGTTVYYQCRACRHQTTLTAGTMFEGTKLPLRTWLLALHLTATKTN
LAALELMRHLGVNYKTAWRMKHKIMQAMAEREEPRRLNGFVQIDDAYLGGERNGGKRGRGAEGKQPFVIAVQTDARFAAPSLAVIEPVRSFDNVSLEDWI
ARRLAPGCETYTDGLACFRRLEDAGHAHTTLDTGGGRAATEAPGARWVNVLLGNVKRAINGTYHAIRQAKYARRYLAEAAYRFNRRFRLHEMLPRLATAM
LRCKPCPEPVLRAASNFHG
LAALELMRHLGVNYKTAWRMKHKIMQAMAEREEPRRLNGFVQIDDAYLGGERNGGKRGRGAEGKQPFVIAVQTDARFAAPSLAVIEPVRSFDNVSLEDWI
ARRLAPGCETYTDGLACFRRLEDAGHAHTTLDTGGGRAATEAPGARWVNVLLGNVKRAINGTYHAIRQAKYARRYLAEAAYRFNRRFRLHEMLPRLATAM
LRCKPCPEPVLRAASNFHG
Blast result :
Comments
ISThy1 is 89% aa similar to ISXca4.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.