ISThy1

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FQUK01000058 ND Thermomonas hydrothermalis
Thermomonas hydrothermalis DSM 14834
Pseudomonas aeruginosa PA38182
DNA section
IS Length : 1069 bp

Ends


IR Length : 24

IRL : CCTGATTAGCCCCGACCCTCAGCCGCCAGTCGCAGGATGTGCGTCGCCCA
IRR : CCTGATTAGCCCCGACCCTCAGCCATGAAAATTGCTCGCAGCGCGCAAGA

Insertion site


Left flankDirect repeatRight flankDR Length
TGGTCGCCGACAAGTCCAATNNNN0
TATTCATAAGCTATTCCTCTTTACTTCCTACAA8

DNA sequence

CCTGATTAGCCCCGACCCTCAGCCGCCAGTCGCAGGATGTGCGTCGCCCACCGCCGAGCATACGGCCACCTGAAGGCGACGAGGTGGCGTCATGAGCATC
AATTCCGTGCAGTTCCAGGCTGGCCTGTCCATGGCCGAGTTCATCGCCCGCTACGGCACCGAGGCCAAGTGCTACCGTGCCCTGTACCAGTGGCGTTGGC
CGCAAGGCTTCCGCTGCCCGGCCTGCACTGGACGGGCCCGCTCGCGGTTTCGGCGCGGGACGACGGTCTACTACCAGTGCCGCGCCTGCCGGCACCAGAC
CACGCTGACCGCCGGCACGATGTTCGAGGGCACCAAGCTGCCGCTGCGCACCTGGCTGCTGGCCCTGCACCTGACCGCGACCAAGACCAACCTCGCCGCG
CTGGAGCTGATGCGCCACCTGGGAGTCAACTACAAGACCGCCTGGCGGATGAAGCACAAGATCATGCAGGCCATGGCCGAGCGCGAGGAACCCCGGCGGC
TCAATGGCTTCGTGCAGATCGACGATGCCTACCTCGGCGGCGAGCGCAACGGCGGCAAGCGCGGGCGCGGTGCCGAGGGCAAGCAACCCTTCGTGATCGC
GGTGCAGACCGACGCCCGCTTCGCCGCGCCGAGCCTGGCCGTGATCGAGCCGGTGCGCAGCTTCGACAACGTCTCGCTCGAGGACTGGATCGCACGGCGC
CTGGCGCCCGGATGCGAGACCTATACCGACGGTCTGGCCTGCTTCCGCCGGCTCGAAGACGCCGGCCACGCCCACACCACGCTGGACACCGGCGGCGGCC
GTGCCGCCACCGAGGCGCCGGGCGCGCGTTGGGTGAACGTGCTGCTGGGCAACGTCAAGCGCGCCATCAACGGCACCTACCACGCCATCCGCCAGGCCAA
GTACGCGCGGCGCTACCTGGCCGAAGCCGCCTACCGGTTCAACCGTCGCTTCCGCCTGCATGAGATGCTGCCGCGACTGGCCACCGCCATGCTGCGCTGC
AAGCCTTGCCCCGAGCCGGTCTTGCGCGCTGCGAGCAATTTTCATGGCTGAGGGTCGGGGCTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
960 bp319 aa921051+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSINSVQFQAGLSMAEFIARYGTEAKCYRALYQWRWPQGFRCPACTGRARSRFRRGTTVYYQCRACRHQTTLTAGTMFEGTKLPLRTWLLALHLTATKTN
LAALELMRHLGVNYKTAWRMKHKIMQAMAEREEPRRLNGFVQIDDAYLGGERNGGKRGRGAEGKQPFVIAVQTDARFAAPSLAVIEPVRSFDNVSLEDWI
ARRLAPGCETYTDGLACFRRLEDAGHAHTTLDTGGGRAATEAPGARWVNVLLGNVKRAINGTYHAIRQAKYARRYLAEAAYRFNRRFRLHEMLPRLATAM
LRCKPCPEPVLRAASNFHG

 

Blast result :
Comments
ISThy1 is 89% aa similar to ISXca4.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.