ISMetp1

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LXWX01000105 ND Methylosinus sp.
Methylosinus sp. 3S-1
DNA section
IS Length : 996 bp

Ends


IR Length : 26/36

IRL : CCTGCTTACGCCTGTTGATCAGCCAAGTTTTAGAGGTTAGAACAAACAAG
IRR : CCTGCTTACGCCTGAAAGTCCGCCAGCTTGAGGAGGCGGTAGGGCATCGG

Insertion site


Left flankDirect repeatRight flankDR Length
CTGATGAACAAAGGCGGTTGTCGTTGCC8

DNA sequence

CCTGCTTACGCCTGTTGATCAGCCAAGTTTTAGAGGTTAGAACAAACAAGGAACATACTGATTTGGCGAGGACGAGGCGATGGCGCGCAACAAAGTGCAA
TTTCAGAAAGGCCTCAGCGAAAGTGCATTCGAGGCGGCCTATGGAAGCGAAGAGCAATGCCACGCGGCGCTCGTCGCCTGGCGTTGGCCCGATGGCTTCG
AATGCCCCGATTGCGGTGGCAAGGCGCATTGCGTGGTGACGCGCGGCGCGCGCAAGCTGTTTCAGTGCGACGCCTGCCGAAAGCAAACGTCGGTGCGCGC
CGGGACCATTTTCGCATCGAGCAAATTGCCGCTGCGCGTGTGGTTCAAAGCGATGTATCACCTCACGCAATCCAAGCAGGGAATCTCTGGCCTCGAATTG
TCGCGGCGTCTCGGGATCACCTACAATGCCGCGTGGAAGTTGAAGCACAAGCTGGCGCAGGTCATGCTCGAGCGCAACGCGACGAAGCGGCTGAAGGGCA
AGGTCCAGATGGACGACGCCTATCTCGGCGGCGAACGCTCGGGCGCCGTGGGGCGCGGAGCCGAGGGCAAGACGCCCTTCGTCGCCGCCGTCGAGACGAC
GGATGACGACAAGCCGCACAAGATCATCCTGCGGCGCGTGAAAGCGTTCAGCAAGGCGGAGTTGCGCAAGCTCGCCGGCGCCGCGCTCGAGAGTGGCGCG
GCTGTCGTCTCCGACACGCACAGCGCGATCGTCACCGGGTCGGGAGCAAAAGCCGCGAAAACCCCAGCCTTCAAATGGGTCAACACCGCCCTCGGCAATA
TCAAGGCGGCGATCGTCGGAACCTATCGAGCCGTCGGGGAAAAACATGTCCCGCGCTACCTCGCCGAATTCGAATACCGCTTCAATCGGCGATACGATCT
CGCCAACATGATCCCGCGCCTTGCCGTCATCGCGACAGCAACAGCCCCGATGCCCTACCGCCTCCTCAAGCTGGCGGACTTTCAGGCGTAAGCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
912 bp303 aa80991+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MARNKVQFQKGLSESAFEAAYGSEEQCHAALVAWRWPDGFECPDCGGKAHCVVTRGARKLFQCDACRKQTSVRAGTIFASSKLPLRVWFKAMYHLTQSKQ
GISGLELSRRLGITYNAAWKLKHKLAQVMLERNATKRLKGKVQMDDAYLGGERSGAVGRGAEGKTPFVAAVETTDDDKPHKIILRRVKAFSKAELRKLAG
AALESGAAVVSDTHSAIVTGSGAKAAKTPAFKWVNTALGNIKAAIVGTYRAVGEKHVPRYLAEFEYRFNRRYDLANMIPRLAVIATATAPMPYRLLKLAD
FQA

 

Blast result :
Comments
ISMetp1 is 69% aa similar to ISHsp4.
References
1] ISfinder annotation (2017)
2] Shinoda,R. and Bao,Z. (2016) Direct GenBank submission.