ISVfl1
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ASXS01000017 | ND | Vibrio fluvialis | Vibrio fluvialis PG41 |
DNA section
IS Length : 1754 bp
Ends
IR Length : 23/31
IRL : CCTGATTACGTACTAGTTTCAGCTTGATCATTTTCTAGTCATCACTATAC
IRR : CCTGATTACCCCTCACTTTCAGCTAAATAAGGAACACTATGAGATTCAAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATTAAACAA | TTAAAAAA | AGACCGTAAC | 8 |
DNA sequence
CCTGATTACGTACTAGTTTCAGCTTGATCATTTTCTAGTCATCACTATACTCAGATCATTGGTTTGAGGGGTGTTTATGGCTAGAAATGAGATCCAGTTT
CAGAAAGGAGTGTCATTATTTCGCTTCAATAACCTCTATGGAACGGAAGCTCAGTGCTACGATAGGCTTTTTAGCCTCAGATGGAACAATGGCTTTGTTT
GCCCCACTTGTGGTGGCAAAGAGTATTGTCAGTTAAAACGCCATTCCCTATACCAATGCAACACCTGTCATCAACAGACTTCCCTCACTGCTGGAACTAT
CCTCGATAATACCAAGCTACCGTTGAGCAAGTGGTTTCTCGCCATATTTTTGCTTACTCAAGTCAAAAACGGCATATCAGCATTAGAGTTATCTAGGTTG
ATTGAAGTTTCATACAACACAGCATGGCGCATGAAGCATAAACTCATGCAAGCAATGAAAGAGAGTGATGATAAACGACAGCTCGATTACATCGTACAAC
TTGACGATGCCTATTGGGGTGGTAAGGGTAAAGGTGGTAAGCGTGGGCGAGGCTCTGAAAATAAAGTGCCTTTCATAGCAGCCGTAGCTCTGAATGAGGA
ATACAATCCTGTTTACATGCGAATGACCGTTGTAGAGGGCTTCCGCAAGGGAGAGATCGAAAAGTGGGCAAAGAAGCACTTAGCTCCCTCGACTCTTGCT
ATATCAGATGGTCTTTCCTGCTTTGAAGCCCTATCTAATGCCAACGTTTACCACGACCAAGTAATTAAAGATGGCGCTCCCGATCTGGATACTATTCAAG
ATCAATATTTTCATTGGGTTGATACAATGATAGGCAATATCAAAAACTCATTGAGAGGTACTTACCATGCAATCAGTAAGAAACACCTCCCAAGATATCT
CGGAGAGTTCTGTTTTAGATTTAACTATCGATTTAGACTTGAGGAAGTGTTAGATGAGCTTCTTGGCTCATCGATGACAACGCCACCAATGCCATATCGA
TTGCTGAAACTTGCAGAATCTAACTGAAGTTAATGCACACCTTCGTATAGTAATATTGATGCTTCTGAGAATAGATAAACTTTCTTCGACTTACTATCCT
TGATTTTCATCGATATACGATACACCTTGCTCTCGCATATCTTATCGTCATATTTGGCGATGCCTTTTTCAGTCTTAATCCATCCATCACTAGATCTTTC
ATGCTTAAATTCATCCTCGGATAGCCCCAGTTTTTCCCTCAATACGGCTATACAGCCTTGAGCAAGTTTTTTTTCGGCTAACTCTGCTTCTTGCTTTAAC
TTCCGTTTTTCAGCAGCCTCTGCGAAGCTTTTTTCCATAGCTTCTCTTTCTAGTTTACGCTGCGCCTGTTCTCTTTCTTTTAGCTCTTGCGCTGTAGGAA
GTGTTATTACAGGTTTATAAGGGATGCGTCCATCAAGATTCATGTCGCTGCCCTTAACTCCAGTTATATATGAAATGGTCTTCTTGCCTTTATCATCAGT
TGTAGTTTCCATATGTTGCTGGGTGCTATCACTAGCTAGATCACACTGAATTCCGTTAAGGTGGGGAATAACTTTAACTCCCGATATACATGGGTTGAAG
TAAAGATTAACTCCTTGAAATTCATTAACTCCTGCATCTTCTAGAGAGTTTAAAACTTCCGCAAATTTCTCCAATAACTCTTGCTTTCCAACAGAGCCTT
TAAACTTGAATCTCATAGTGTTCCTTATTTAGCTGAAAGTGAGGGGTAATCAGG
CAGAAAGGAGTGTCATTATTTCGCTTCAATAACCTCTATGGAACGGAAGCTCAGTGCTACGATAGGCTTTTTAGCCTCAGATGGAACAATGGCTTTGTTT
GCCCCACTTGTGGTGGCAAAGAGTATTGTCAGTTAAAACGCCATTCCCTATACCAATGCAACACCTGTCATCAACAGACTTCCCTCACTGCTGGAACTAT
CCTCGATAATACCAAGCTACCGTTGAGCAAGTGGTTTCTCGCCATATTTTTGCTTACTCAAGTCAAAAACGGCATATCAGCATTAGAGTTATCTAGGTTG
ATTGAAGTTTCATACAACACAGCATGGCGCATGAAGCATAAACTCATGCAAGCAATGAAAGAGAGTGATGATAAACGACAGCTCGATTACATCGTACAAC
TTGACGATGCCTATTGGGGTGGTAAGGGTAAAGGTGGTAAGCGTGGGCGAGGCTCTGAAAATAAAGTGCCTTTCATAGCAGCCGTAGCTCTGAATGAGGA
ATACAATCCTGTTTACATGCGAATGACCGTTGTAGAGGGCTTCCGCAAGGGAGAGATCGAAAAGTGGGCAAAGAAGCACTTAGCTCCCTCGACTCTTGCT
ATATCAGATGGTCTTTCCTGCTTTGAAGCCCTATCTAATGCCAACGTTTACCACGACCAAGTAATTAAAGATGGCGCTCCCGATCTGGATACTATTCAAG
ATCAATATTTTCATTGGGTTGATACAATGATAGGCAATATCAAAAACTCATTGAGAGGTACTTACCATGCAATCAGTAAGAAACACCTCCCAAGATATCT
CGGAGAGTTCTGTTTTAGATTTAACTATCGATTTAGACTTGAGGAAGTGTTAGATGAGCTTCTTGGCTCATCGATGACAACGCCACCAATGCCATATCGA
TTGCTGAAACTTGCAGAATCTAACTGAAGTTAATGCACACCTTCGTATAGTAATATTGATGCTTCTGAGAATAGATAAACTTTCTTCGACTTACTATCCT
TGATTTTCATCGATATACGATACACCTTGCTCTCGCATATCTTATCGTCATATTTGGCGATGCCTTTTTCAGTCTTAATCCATCCATCACTAGATCTTTC
ATGCTTAAATTCATCCTCGGATAGCCCCAGTTTTTCCCTCAATACGGCTATACAGCCTTGAGCAAGTTTTTTTTCGGCTAACTCTGCTTCTTGCTTTAAC
TTCCGTTTTTCAGCAGCCTCTGCGAAGCTTTTTTCCATAGCTTCTCTTTCTAGTTTACGCTGCGCCTGTTCTCTTTCTTTTAGCTCTTGCGCTGTAGGAA
GTGTTATTACAGGTTTATAAGGGATGCGTCCATCAAGATTCATGTCGCTGCCCTTAACTCCAGTTATATATGAAATGGTCTTCTTGCCTTTATCATCAGT
TGTAGTTTCCATATGTTGCTGGGTGCTATCACTAGCTAGATCACACTGAATTCCGTTAAGGTGGGGAATAACTTTAACTCCCGATATACATGGGTTGAAG
TAAAGATTAACTCCTTGAAATTCATTAACTCCTGCATCTTCTAGAGAGTTTAAAACTTCCGCAAATTTCTCCAATAACTCTTGCTTTCCAACAGAGCCTT
TAAACTTGAATCTCATAGTGTTCCTTATTTAGCTGAAAGTGAGGGGTAATCAGG
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
951 bp | 316 aa | 77 | 1027 | + | No |
Chemistry : DDE
ORF sequence :
MARNEIQFQKGVSLFRFNNLYGTEAQCYDRLFSLRWNNGFVCPTCGGKEYCQLKRHSLYQCNTCHQQTSLTAGTILDNTKLPLSKWFLAIFLLTQVKNGI
SALELSRLIEVSYNTAWRMKHKLMQAMKESDDKRQLDYIVQLDDAYWGGKGKGGKRGRGSENKVPFIAAVALNEEYNPVYMRMTVVEGFRKGEIEKWAKK
HLAPSTLAISDGLSCFEALSNANVYHDQVIKDGAPDLDTIQDQYFHWVDTMIGNIKNSLRGTYHAISKKHLPRYLGEFCFRFNYRFRLEEVLDELLGSSM
TTPPMPYRLLKLAESN
SALELSRLIEVSYNTAWRMKHKLMQAMKESDDKRQLDYIVQLDDAYWGGKGKGGKRGRGSENKVPFIAAVALNEEYNPVYMRMTVVEGFRKGEIEKWAKK
HLAPSTLAISDGLSCFEALSNANVYHDQVIKDGAPDLDTIQDQYFHWVDTMIGNIKNSLRGTYHAISKKHLPRYLGEFCFRFNYRFRLEEVLDELLGSSM
TTPPMPYRLLKLAESN
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
687 bp | 228 aa | 1716 | 1030 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MRFKFKGSVGKQELLEKFAEVLNSLEDAGVNEFQGVNLYFNPCISGVKVIPHLNGIQCDLASDSTQQHMETTTDDKGKKTISYITGVKGSDMNLDGRIPY
KPVITLPTAQELKEREQAQRKLEREAMEKSFAEAAEKRKLKQEAELAEKKLAQGCIAVLREKLGLSEDEFKHERSSDGWIKTEKGIAKYDDKICESKVYR
ISMKIKDSKSKKVYLFSEASILLYEGVH
KPVITLPTAQELKEREQAQRKLEREAMEKSFAEAAEKRKLKQEAELAEKKLAQGCIAVLREKLGLSEDEFKHERSSDGWIKTEKGIAKYDDKICESKVYR
ISMKIKDSKSKKVYLFSEASILLYEGVH
Blast result :
Comments
ISVfl1 is 77% (transposase) aa similar to ISPma1.
References
1] ISfinder annotation (2017)
2] Khatri,I., Mahajan,S., Dureja,C., Subramanian,S. and Raychaudhuri,S. (2013) Gut Pathog 5 (1), 20.
2] Khatri,I., Mahajan,S., Dureja,C., Subramanian,S. and Raychaudhuri,S. (2013) Gut Pathog 5 (1), 20.