ISVfl1

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ASXS01000017 ND Vibrio fluvialis
Vibrio fluvialis PG41
DNA section
IS Length : 1754 bp

Ends


IR Length : 23/31

IRL : CCTGATTACGTACTAGTTTCAGCTTGATCATTTTCTAGTCATCACTATAC
IRR : CCTGATTACCCCTCACTTTCAGCTAAATAAGGAACACTATGAGATTCAAG

Insertion site


Left flankDirect repeatRight flankDR Length
AATTAAACAATTAAAAAAAGACCGTAAC8

DNA sequence

CCTGATTACGTACTAGTTTCAGCTTGATCATTTTCTAGTCATCACTATACTCAGATCATTGGTTTGAGGGGTGTTTATGGCTAGAAATGAGATCCAGTTT
CAGAAAGGAGTGTCATTATTTCGCTTCAATAACCTCTATGGAACGGAAGCTCAGTGCTACGATAGGCTTTTTAGCCTCAGATGGAACAATGGCTTTGTTT
GCCCCACTTGTGGTGGCAAAGAGTATTGTCAGTTAAAACGCCATTCCCTATACCAATGCAACACCTGTCATCAACAGACTTCCCTCACTGCTGGAACTAT
CCTCGATAATACCAAGCTACCGTTGAGCAAGTGGTTTCTCGCCATATTTTTGCTTACTCAAGTCAAAAACGGCATATCAGCATTAGAGTTATCTAGGTTG
ATTGAAGTTTCATACAACACAGCATGGCGCATGAAGCATAAACTCATGCAAGCAATGAAAGAGAGTGATGATAAACGACAGCTCGATTACATCGTACAAC
TTGACGATGCCTATTGGGGTGGTAAGGGTAAAGGTGGTAAGCGTGGGCGAGGCTCTGAAAATAAAGTGCCTTTCATAGCAGCCGTAGCTCTGAATGAGGA
ATACAATCCTGTTTACATGCGAATGACCGTTGTAGAGGGCTTCCGCAAGGGAGAGATCGAAAAGTGGGCAAAGAAGCACTTAGCTCCCTCGACTCTTGCT
ATATCAGATGGTCTTTCCTGCTTTGAAGCCCTATCTAATGCCAACGTTTACCACGACCAAGTAATTAAAGATGGCGCTCCCGATCTGGATACTATTCAAG
ATCAATATTTTCATTGGGTTGATACAATGATAGGCAATATCAAAAACTCATTGAGAGGTACTTACCATGCAATCAGTAAGAAACACCTCCCAAGATATCT
CGGAGAGTTCTGTTTTAGATTTAACTATCGATTTAGACTTGAGGAAGTGTTAGATGAGCTTCTTGGCTCATCGATGACAACGCCACCAATGCCATATCGA
TTGCTGAAACTTGCAGAATCTAACTGAAGTTAATGCACACCTTCGTATAGTAATATTGATGCTTCTGAGAATAGATAAACTTTCTTCGACTTACTATCCT
TGATTTTCATCGATATACGATACACCTTGCTCTCGCATATCTTATCGTCATATTTGGCGATGCCTTTTTCAGTCTTAATCCATCCATCACTAGATCTTTC
ATGCTTAAATTCATCCTCGGATAGCCCCAGTTTTTCCCTCAATACGGCTATACAGCCTTGAGCAAGTTTTTTTTCGGCTAACTCTGCTTCTTGCTTTAAC
TTCCGTTTTTCAGCAGCCTCTGCGAAGCTTTTTTCCATAGCTTCTCTTTCTAGTTTACGCTGCGCCTGTTCTCTTTCTTTTAGCTCTTGCGCTGTAGGAA
GTGTTATTACAGGTTTATAAGGGATGCGTCCATCAAGATTCATGTCGCTGCCCTTAACTCCAGTTATATATGAAATGGTCTTCTTGCCTTTATCATCAGT
TGTAGTTTCCATATGTTGCTGGGTGCTATCACTAGCTAGATCACACTGAATTCCGTTAAGGTGGGGAATAACTTTAACTCCCGATATACATGGGTTGAAG
TAAAGATTAACTCCTTGAAATTCATTAACTCCTGCATCTTCTAGAGAGTTTAAAACTTCCGCAAATTTCTCCAATAACTCTTGCTTTCCAACAGAGCCTT
TAAACTTGAATCTCATAGTGTTCCTTATTTAGCTGAAAGTGAGGGGTAATCAGG
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
951 bp316 aa771027+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MARNEIQFQKGVSLFRFNNLYGTEAQCYDRLFSLRWNNGFVCPTCGGKEYCQLKRHSLYQCNTCHQQTSLTAGTILDNTKLPLSKWFLAIFLLTQVKNGI
SALELSRLIEVSYNTAWRMKHKLMQAMKESDDKRQLDYIVQLDDAYWGGKGKGGKRGRGSENKVPFIAAVALNEEYNPVYMRMTVVEGFRKGEIEKWAKK
HLAPSTLAISDGLSCFEALSNANVYHDQVIKDGAPDLDTIQDQYFHWVDTMIGNIKNSLRGTYHAISKKHLPRYLGEFCFRFNYRFRLEEVLDELLGSSM
TTPPMPYRLLKLAESN

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
687 bp228 aa17161030-No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MRFKFKGSVGKQELLEKFAEVLNSLEDAGVNEFQGVNLYFNPCISGVKVIPHLNGIQCDLASDSTQQHMETTTDDKGKKTISYITGVKGSDMNLDGRIPY
KPVITLPTAQELKEREQAQRKLEREAMEKSFAEAAEKRKLKQEAELAEKKLAQGCIAVLREKLGLSEDEFKHERSSDGWIKTEKGIAKYDDKICESKVYR
ISMKIKDSKSKKVYLFSEASILLYEGVH

 

Blast result :
Comments
ISVfl1 is 77% (transposase) aa similar to ISPma1.
References
1] ISfinder annotation (2017)
2] Khatri,I., Mahajan,S., Dureja,C., Subramanian,S. and Raychaudhuri,S. (2013) Gut Pathog 5 (1), 20.