ISChba1
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JZRA01000003 | ND | Chloroflexi bacterium | Chloroflexi bacterium OLB13 |
DNA section
IS Length : 1033 bp
Ends
IR Length : 24/25
IRL : CCTGATTACCAATGAGGCTCAGCCAGTGAGCCAGTGGGGGTAGCAAACTG
IRR : CCTGATTACCAATGAGCCTCAGCCAACTTTACGAGCCGGTACGGCATAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGAAGCAGACAAAACATATA | TTCTTCTTTGAGCTTGAGAA | 0 |
DNA sequence
CCTGATTACCAATGAGGCTCAGCCAGTGAGCCAGTGGGGGTAGCAAACTGGCATCGCTTGATTTTCCAAGGAGATAAGCGATGCCGAAGAACAAGGTGCA
ATTTCAGCGGGGCATGGGTTTGCGCGAATTCATGGACAAGTACGGAACGACGGAACAATGCGAGCGGGCGCTGTTCGCGTGGCGCTGGCCGCGCGGGTTT
GTCTGCCCCGAGTGCGGGCATACGGCGTACTGCGCTCTCAAGGGGCGACGGCTGATCCAGTGCAACGCCTGCCGCCGGCAGACCTCGGTCACGGCCGGGA
CGATCTTCGCCGGCTCCAAGCTGCCGCTTTCCGTCTGGTTTTTGGCCATGCACCTGATCACCCAGGCCAAGAACGGCATCTCGTCCCTGGAACTGTCCCG
CCAACTGGCCATCTCCCAGAACAGCGCCTGGCTGATGAAGCACAAGCTCATGCAGGCGATGCTGGAGCGCGATGCTGGTCGGCAACTCAAGGGGTTGGTG
CAGCTCGACGATGCCTACTGGGGCGGCCGGCGCCGGGGCGGGAAGCGCGGCCGCGGCACGCGCGGCAAGACGCCCTTCGTGGCGGCGGTGGAAACCGATG
CGGCGGGACGGCCGCGCCGCATGAGTTTCAATCGCGTCAAGGGTTTCCGATCGAAGGAGATCGCCCGCTGGAGCCGGACGAAATTGGCTCCGGGCACGAC
GGTGCATTCGGACGGTCTGGCCTGCTTTGCCGCGGTCAATCAGGCCGGCTGCACACACCGGCCGACGGTCATGAGCGGCCCGGGCATTGAGCGACGCAGG
CTTGCGCTCACCTGGGTCGATACAATGCTCGGCAATGTGAAGAATGCGATCCACGGCACCTATCATGCGATACGCGAGAAACATCTGCCGCGCTATCTGG
CCGAATACAGCTATCGCTTCAACCGACGTTTCGATCTGGCCAGCATGCTTGCTCGGCTGGCTGCCGCCGCCGCGCAAACGCCGCCTATGCCGTACCGGCT
CGTAAAGTTGGCTGAGGCTCATTGGTAATCAGG
ATTTCAGCGGGGCATGGGTTTGCGCGAATTCATGGACAAGTACGGAACGACGGAACAATGCGAGCGGGCGCTGTTCGCGTGGCGCTGGCCGCGCGGGTTT
GTCTGCCCCGAGTGCGGGCATACGGCGTACTGCGCTCTCAAGGGGCGACGGCTGATCCAGTGCAACGCCTGCCGCCGGCAGACCTCGGTCACGGCCGGGA
CGATCTTCGCCGGCTCCAAGCTGCCGCTTTCCGTCTGGTTTTTGGCCATGCACCTGATCACCCAGGCCAAGAACGGCATCTCGTCCCTGGAACTGTCCCG
CCAACTGGCCATCTCCCAGAACAGCGCCTGGCTGATGAAGCACAAGCTCATGCAGGCGATGCTGGAGCGCGATGCTGGTCGGCAACTCAAGGGGTTGGTG
CAGCTCGACGATGCCTACTGGGGCGGCCGGCGCCGGGGCGGGAAGCGCGGCCGCGGCACGCGCGGCAAGACGCCCTTCGTGGCGGCGGTGGAAACCGATG
CGGCGGGACGGCCGCGCCGCATGAGTTTCAATCGCGTCAAGGGTTTCCGATCGAAGGAGATCGCCCGCTGGAGCCGGACGAAATTGGCTCCGGGCACGAC
GGTGCATTCGGACGGTCTGGCCTGCTTTGCCGCGGTCAATCAGGCCGGCTGCACACACCGGCCGACGGTCATGAGCGGCCCGGGCATTGAGCGACGCAGG
CTTGCGCTCACCTGGGTCGATACAATGCTCGGCAATGTGAAGAATGCGATCCACGGCACCTATCATGCGATACGCGAGAAACATCTGCCGCGCTATCTGG
CCGAATACAGCTATCGCTTCAACCGACGTTTCGATCTGGCCAGCATGCTTGCTCGGCTGGCTGCCGCCGCCGCGCAAACGCCGCCTATGCCGTACCGGCT
CGTAAAGTTGGCTGAGGCTCATTGGTAATCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
948 bp | 315 aa | 81 | 1028 | + | No |
Chemistry : DDE
ORF sequence :
MPKNKVQFQRGMGLREFMDKYGTTEQCERALFAWRWPRGFVCPECGHTAYCALKGRRLIQCNACRRQTSVTAGTIFAGSKLPLSVWFLAMHLITQAKNGI
SSLELSRQLAISQNSAWLMKHKLMQAMLERDAGRQLKGLVQLDDAYWGGRRRGGKRGRGTRGKTPFVAAVETDAAGRPRRMSFNRVKGFRSKEIARWSRT
KLAPGTTVHSDGLACFAAVNQAGCTHRPTVMSGPGIERRRLALTWVDTMLGNVKNAIHGTYHAIREKHLPRYLAEYSYRFNRRFDLASMLARLAAAAAQT
PPMPYRLVKLAEAHW
SSLELSRQLAISQNSAWLMKHKLMQAMLERDAGRQLKGLVQLDDAYWGGRRRGGKRGRGTRGKTPFVAAVETDAAGRPRRMSFNRVKGFRSKEIARWSRT
KLAPGTTVHSDGLACFAAVNQAGCTHRPTVMSGPGIERRRLALTWVDTMLGNVKNAIHGTYHAIREKHLPRYLAEYSYRFNRRFDLASMLARLAAAAAQT
PPMPYRLVKLAEAHW
Blast result :
Comments
ISChba1 is 73% aa similar to ISCosp1.
References
1] ISfinder annotation (2017)
2] Speth,D.R., In 't Zandt,M.H., Guerrero-Cruz,S., Dutilh,B.E. and Jetten,M.S. (2016) Nat Commun 7, 11172.
2] Speth,D.R., In 't Zandt,M.H., Guerrero-Cruz,S., Dutilh,B.E. and Jetten,M.S. (2016) Nat Commun 7, 11172.