ISChba1

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JZRA01000003 ND Chloroflexi bacterium
Chloroflexi bacterium OLB13
DNA section
IS Length : 1033 bp

Ends


IR Length : 24/25

IRL : CCTGATTACCAATGAGGCTCAGCCAGTGAGCCAGTGGGGGTAGCAAACTG
IRR : CCTGATTACCAATGAGCCTCAGCCAACTTTACGAGCCGGTACGGCATAGG

Insertion site


Left flankDirect repeatRight flankDR Length
CGAAGCAGACAAAACATATATTCTTCTTTGAGCTTGAGAA0

DNA sequence

CCTGATTACCAATGAGGCTCAGCCAGTGAGCCAGTGGGGGTAGCAAACTGGCATCGCTTGATTTTCCAAGGAGATAAGCGATGCCGAAGAACAAGGTGCA
ATTTCAGCGGGGCATGGGTTTGCGCGAATTCATGGACAAGTACGGAACGACGGAACAATGCGAGCGGGCGCTGTTCGCGTGGCGCTGGCCGCGCGGGTTT
GTCTGCCCCGAGTGCGGGCATACGGCGTACTGCGCTCTCAAGGGGCGACGGCTGATCCAGTGCAACGCCTGCCGCCGGCAGACCTCGGTCACGGCCGGGA
CGATCTTCGCCGGCTCCAAGCTGCCGCTTTCCGTCTGGTTTTTGGCCATGCACCTGATCACCCAGGCCAAGAACGGCATCTCGTCCCTGGAACTGTCCCG
CCAACTGGCCATCTCCCAGAACAGCGCCTGGCTGATGAAGCACAAGCTCATGCAGGCGATGCTGGAGCGCGATGCTGGTCGGCAACTCAAGGGGTTGGTG
CAGCTCGACGATGCCTACTGGGGCGGCCGGCGCCGGGGCGGGAAGCGCGGCCGCGGCACGCGCGGCAAGACGCCCTTCGTGGCGGCGGTGGAAACCGATG
CGGCGGGACGGCCGCGCCGCATGAGTTTCAATCGCGTCAAGGGTTTCCGATCGAAGGAGATCGCCCGCTGGAGCCGGACGAAATTGGCTCCGGGCACGAC
GGTGCATTCGGACGGTCTGGCCTGCTTTGCCGCGGTCAATCAGGCCGGCTGCACACACCGGCCGACGGTCATGAGCGGCCCGGGCATTGAGCGACGCAGG
CTTGCGCTCACCTGGGTCGATACAATGCTCGGCAATGTGAAGAATGCGATCCACGGCACCTATCATGCGATACGCGAGAAACATCTGCCGCGCTATCTGG
CCGAATACAGCTATCGCTTCAACCGACGTTTCGATCTGGCCAGCATGCTTGCTCGGCTGGCTGCCGCCGCCGCGCAAACGCCGCCTATGCCGTACCGGCT
CGTAAAGTTGGCTGAGGCTCATTGGTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
948 bp315 aa811028+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPKNKVQFQRGMGLREFMDKYGTTEQCERALFAWRWPRGFVCPECGHTAYCALKGRRLIQCNACRRQTSVTAGTIFAGSKLPLSVWFLAMHLITQAKNGI
SSLELSRQLAISQNSAWLMKHKLMQAMLERDAGRQLKGLVQLDDAYWGGRRRGGKRGRGTRGKTPFVAAVETDAAGRPRRMSFNRVKGFRSKEIARWSRT
KLAPGTTVHSDGLACFAAVNQAGCTHRPTVMSGPGIERRRLALTWVDTMLGNVKNAIHGTYHAIREKHLPRYLAEYSYRFNRRFDLASMLARLAAAAAQT
PPMPYRLVKLAEAHW

 

Blast result :
Comments
ISChba1 is 73% aa similar to ISCosp1.
References
1] ISfinder annotation (2017)
2] Speth,D.R., In 't Zandt,M.H., Guerrero-Cruz,S., Dutilh,B.E. and Jetten,M.S. (2016) Nat Commun 7, 11172.