ISPte1

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AUXQ01000100 ND Photorhabdus temperata
Photorhabdus luminescens subsp. laumondii TTO1
Photorhabdus temperata subsp. temperata M1021
DNA section
IS Length : 1011 bp

Ends


IR Length : 17/24

IRL : CCCGATTATCACTTAAATTCAGCTCCCATAGGCGTATACTTAAAATAAGT
IRR : CCTGATTACCATCGAATCTCAGCTAGTTTGAGTAAATACTCAGGTATAGG

Insertion site


Left flankDirect repeatRight flankDR Length
CGTTTGCAAGACAAAAGTTATAAAAATAATGATGTCATTAT0
GGCTAATTTTCTTAAAAGAATGCTCACCAGAT8

DNA sequence

CCCGATTATCACTTAAATTCAGCTCCCATAGGCGTATACTTAAAATAAGTCTGTGTGGAGGTAAATGAAAATGGCTAAAAATCAGATTCAATTCCAAAAA
GGCATTTCTATTCATGAGGTTATTTCATTATATGGTCATGAAGAACAATGCCAGAAACAGGTGTTCGATATGCGCTGGCCTACGGGATATCGCTGTCCTC
ATTGTGGGCATGATAAGTATTGCCAGTTAAAATCTCGTCTCCTTTATCAGTGCAATCATCAGACATCTTTGACGGCCGGCACAGTGTTTTCTGCGTCAAA
ATTACCTTTAACTGTGTGTTTTTTGGCGATTTATCTCATGACTCAGGAGAAAAATGGGATTTCTGCACTTGAATTGTCACGTCAACTGGGCATTTCCTAC
AACGCTGCATGGCGTATGAAACACAAGCTAATGAAAGCGATGAAAGAACGGGATGACGAAAAGCCTCTCGGCGGGTTTATTCAGCTTGACGACGCATACT
GGGGCGGGGCTCAGCACGGCCCCCGAGGGCGAGGGGCAAAAGGGAAATGCCCTTTTGTTGCGGCGGTTTCAATGAATGAAAAGGGCCACCCTATGTTCAT
GCGTTTTAGCGTTGTGAAAGGGTTTAAGACCGGGGAACTTACCCGTTGGGCTAAAGCGCATCTTAAACCAAAATCCCTTGTTATTTCAGATGGATTAGCT
TGCTTTCGGGGGATTGAGCAAGCCGGGACTTTCCATTTGCCCCTCGTCACCGGCGGTGGAGCGCAGAGTGTTAAGCTTCCTTATTTTCAGTGGGTTAACA
CAATGATGAGTAATGTAAAAAATTCGATACGCGGAACATATCATTCGATTAGCAAAAAATATTTACCTCGTTATCTTGCCGAATTCTGTTTCAGGTTCAA
TTGGCGCTTTAACCTTAAAAAAACATTCGAACAGCTTATTTATTCATGTATCCGGGCAGCACCTATACCTGAGTATTTACTCAAACTAGCTGAGATTCGA
TGGTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
942 bp313 aa651006+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKMAKNQIQFQKGISIHEVISLYGHEEQCQKQVFDMRWPTGYRCPHCGHDKYCQLKSRLLYQCNHQTSLTAGTVFSASKLPLTVCFLAIYLMTQEKNGIS
ALELSRQLGISYNAAWRMKHKLMKAMKERDDEKPLGGFIQLDDAYWGGAQHGPRGRGAKGKCPFVAAVSMNEKGHPMFMRFSVVKGFKTGELTRWAKAHL
KPKSLVISDGLACFRGIEQAGTFHLPLVTGGGAQSVKLPYFQWVNTMMSNVKNSIRGTYHSISKKYLPRYLAEFCFRFNWRFNLKKTFEQLIYSCIRAAP
IPEYLLKLAEIRW

 

Blast result :
Comments
ISPte1 is 86% aa similar to ISAwo1.
References
1] ISfinder annotation (2017)
2] Park,G.S., Khan,A.R., Hong,S.J., Jang,E.K., Ullah,I., Jung,B.K., Choi,J., Yoo,N.K., Park,K.J. and Shin,J.H. (2013) Genome Announc 1 (5), e00747-13.