ISPte1
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AUXQ01000100 | ND | Photorhabdus temperata | Photorhabdus luminescens subsp. laumondii TTO1 Photorhabdus temperata subsp. temperata M1021 |
DNA section
IS Length : 1011 bp
Ends
IR Length : 17/24
IRL : CCCGATTATCACTTAAATTCAGCTCCCATAGGCGTATACTTAAAATAAGT
IRR : CCTGATTACCATCGAATCTCAGCTAGTTTGAGTAAATACTCAGGTATAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGTTTGCAAGACAAAAGTTAT | AAAAATAATGATGTCATTAT | 0 | |
GGCTAATTTTCT | TAAAAGAA | TGCTCACCAGAT | 8 |
DNA sequence
CCCGATTATCACTTAAATTCAGCTCCCATAGGCGTATACTTAAAATAAGTCTGTGTGGAGGTAAATGAAAATGGCTAAAAATCAGATTCAATTCCAAAAA
GGCATTTCTATTCATGAGGTTATTTCATTATATGGTCATGAAGAACAATGCCAGAAACAGGTGTTCGATATGCGCTGGCCTACGGGATATCGCTGTCCTC
ATTGTGGGCATGATAAGTATTGCCAGTTAAAATCTCGTCTCCTTTATCAGTGCAATCATCAGACATCTTTGACGGCCGGCACAGTGTTTTCTGCGTCAAA
ATTACCTTTAACTGTGTGTTTTTTGGCGATTTATCTCATGACTCAGGAGAAAAATGGGATTTCTGCACTTGAATTGTCACGTCAACTGGGCATTTCCTAC
AACGCTGCATGGCGTATGAAACACAAGCTAATGAAAGCGATGAAAGAACGGGATGACGAAAAGCCTCTCGGCGGGTTTATTCAGCTTGACGACGCATACT
GGGGCGGGGCTCAGCACGGCCCCCGAGGGCGAGGGGCAAAAGGGAAATGCCCTTTTGTTGCGGCGGTTTCAATGAATGAAAAGGGCCACCCTATGTTCAT
GCGTTTTAGCGTTGTGAAAGGGTTTAAGACCGGGGAACTTACCCGTTGGGCTAAAGCGCATCTTAAACCAAAATCCCTTGTTATTTCAGATGGATTAGCT
TGCTTTCGGGGGATTGAGCAAGCCGGGACTTTCCATTTGCCCCTCGTCACCGGCGGTGGAGCGCAGAGTGTTAAGCTTCCTTATTTTCAGTGGGTTAACA
CAATGATGAGTAATGTAAAAAATTCGATACGCGGAACATATCATTCGATTAGCAAAAAATATTTACCTCGTTATCTTGCCGAATTCTGTTTCAGGTTCAA
TTGGCGCTTTAACCTTAAAAAAACATTCGAACAGCTTATTTATTCATGTATCCGGGCAGCACCTATACCTGAGTATTTACTCAAACTAGCTGAGATTCGA
TGGTAATCAGG
GGCATTTCTATTCATGAGGTTATTTCATTATATGGTCATGAAGAACAATGCCAGAAACAGGTGTTCGATATGCGCTGGCCTACGGGATATCGCTGTCCTC
ATTGTGGGCATGATAAGTATTGCCAGTTAAAATCTCGTCTCCTTTATCAGTGCAATCATCAGACATCTTTGACGGCCGGCACAGTGTTTTCTGCGTCAAA
ATTACCTTTAACTGTGTGTTTTTTGGCGATTTATCTCATGACTCAGGAGAAAAATGGGATTTCTGCACTTGAATTGTCACGTCAACTGGGCATTTCCTAC
AACGCTGCATGGCGTATGAAACACAAGCTAATGAAAGCGATGAAAGAACGGGATGACGAAAAGCCTCTCGGCGGGTTTATTCAGCTTGACGACGCATACT
GGGGCGGGGCTCAGCACGGCCCCCGAGGGCGAGGGGCAAAAGGGAAATGCCCTTTTGTTGCGGCGGTTTCAATGAATGAAAAGGGCCACCCTATGTTCAT
GCGTTTTAGCGTTGTGAAAGGGTTTAAGACCGGGGAACTTACCCGTTGGGCTAAAGCGCATCTTAAACCAAAATCCCTTGTTATTTCAGATGGATTAGCT
TGCTTTCGGGGGATTGAGCAAGCCGGGACTTTCCATTTGCCCCTCGTCACCGGCGGTGGAGCGCAGAGTGTTAAGCTTCCTTATTTTCAGTGGGTTAACA
CAATGATGAGTAATGTAAAAAATTCGATACGCGGAACATATCATTCGATTAGCAAAAAATATTTACCTCGTTATCTTGCCGAATTCTGTTTCAGGTTCAA
TTGGCGCTTTAACCTTAAAAAAACATTCGAACAGCTTATTTATTCATGTATCCGGGCAGCACCTATACCTGAGTATTTACTCAAACTAGCTGAGATTCGA
TGGTAATCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
942 bp | 313 aa | 65 | 1006 | + | No |
Chemistry : DDE
ORF sequence :
MKMAKNQIQFQKGISIHEVISLYGHEEQCQKQVFDMRWPTGYRCPHCGHDKYCQLKSRLLYQCNHQTSLTAGTVFSASKLPLTVCFLAIYLMTQEKNGIS
ALELSRQLGISYNAAWRMKHKLMKAMKERDDEKPLGGFIQLDDAYWGGAQHGPRGRGAKGKCPFVAAVSMNEKGHPMFMRFSVVKGFKTGELTRWAKAHL
KPKSLVISDGLACFRGIEQAGTFHLPLVTGGGAQSVKLPYFQWVNTMMSNVKNSIRGTYHSISKKYLPRYLAEFCFRFNWRFNLKKTFEQLIYSCIRAAP
IPEYLLKLAEIRW
ALELSRQLGISYNAAWRMKHKLMKAMKERDDEKPLGGFIQLDDAYWGGAQHGPRGRGAKGKCPFVAAVSMNEKGHPMFMRFSVVKGFKTGELTRWAKAHL
KPKSLVISDGLACFRGIEQAGTFHLPLVTGGGAQSVKLPYFQWVNTMMSNVKNSIRGTYHSISKKYLPRYLAEFCFRFNWRFNLKKTFEQLIYSCIRAAP
IPEYLLKLAEIRW
Blast result :
Comments
ISPte1 is 86% aa similar to ISAwo1.
References
1] ISfinder annotation (2017)
2] Park,G.S., Khan,A.R., Hong,S.J., Jang,E.K., Ullah,I., Jung,B.K., Choi,J., Yoo,N.K., Park,K.J. and Shin,J.H. (2013) Genome Announc 1 (5), e00747-13.
2] Park,G.S., Khan,A.R., Hong,S.J., Jang,E.K., Ullah,I., Jung,B.K., Choi,J., Yoo,N.K., Park,K.J. and Shin,J.H. (2013) Genome Announc 1 (5), e00747-13.