ISTisp1
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CVPF01000279 | ND | Thiocapsa sp. | Thiocapsa sp. KS1 |
DNA section
IS Length : 1047 bp
Ends
IR Length : 23
IRL : CCTGATTACCAACGAGACTCAGCAGGCTCACGTTTTGAGCCACCGGCCGG
IRR : CCTGATTACCAACGAGACTCAGCCAACTTGAGCAGGCGGTCGGGCATGGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CCTGATTACCAACGAGACTCAGCAGGCTCACGTTTTGAGCCACCGGCCGGCGCACACTGGCGCCGTATCCACCATCGCCGGGAGTCTGCACATGGCCAAG
AACCCCATCCAGTTCCAGAAGGGTTTGAGTTTACATGCGTTTCTCGATCAGTACGGGACCGAGGAGCAGTGCGCCGACGCACTGTTCGGCTGGCGCTGGC
CGGGGGGCTTCGTCTGCCCGGAGTGCGGGCATCCCGAGGATTTCGTCGCCCTGCACACGCGCGACCTGATGCAGTGCAGGCATTGCCACCACCAGGCCTC
GCTGACCGCCGGGACGATCTTCGCCTACACCAAGCTGCCCCTGACCGTCTGGTTTCTCGCCATGTATCTGCTCACCCAGCAGAAAAACGCCATCTCCGCC
CTCGAACTCAAGCGCCATCTCGGGGTGTCCTACCCCACGGCGTGGAGGATCAAGCACAAGCTCCTGCAGGTCATGCTCGAACGTGACGCCGATCGGCAAT
TGACCGGGGTGATCGAGATCGACGACGTCTACTGGGGCGGCGAGGTTCATGGCGAGACCCCCGGACGCGGCTCGCCCAACAAGACCCCCTTCGTCGCCGC
GGTGGCCAAGAACCACGAGGGCCACCCGATCGCGCTGCGCATGAGCGTGGTCAAGGGGTTCCGCAAGACCGAGCTGGCGCACTGGGCCGCCAAATTCATC
CACCCCGACAGTATCGTCGTCAGCGACGGCCTCGCCTGCTTTCGCGGGATCGCGGATGCCGGCATCGAGCACCAAGCCATGGTGACCGGCAGCGGCGCGG
GCGGCGTCGAACTGCCCGAGCGCAAGTGGATCAACACTATCCTCGGCAACGTGAAAACCGCCATGAAAGGCACCTACCATAAGGCCGGCCCTCGCCATCT
GCCGCGTTACCTCGCGGAGTTCTGCTATCGGTTCAATCGCCGCTTCGACCTGGCGGCCATGCTGCCGCGCCTCGGCGTTGCGGCCGCGCGGACCCCGCCC
ATGCCCGACCGCCTGCTCAAGTTGGCTGAGTCTCGTTGGTAATCAGG
AACCCCATCCAGTTCCAGAAGGGTTTGAGTTTACATGCGTTTCTCGATCAGTACGGGACCGAGGAGCAGTGCGCCGACGCACTGTTCGGCTGGCGCTGGC
CGGGGGGCTTCGTCTGCCCGGAGTGCGGGCATCCCGAGGATTTCGTCGCCCTGCACACGCGCGACCTGATGCAGTGCAGGCATTGCCACCACCAGGCCTC
GCTGACCGCCGGGACGATCTTCGCCTACACCAAGCTGCCCCTGACCGTCTGGTTTCTCGCCATGTATCTGCTCACCCAGCAGAAAAACGCCATCTCCGCC
CTCGAACTCAAGCGCCATCTCGGGGTGTCCTACCCCACGGCGTGGAGGATCAAGCACAAGCTCCTGCAGGTCATGCTCGAACGTGACGCCGATCGGCAAT
TGACCGGGGTGATCGAGATCGACGACGTCTACTGGGGCGGCGAGGTTCATGGCGAGACCCCCGGACGCGGCTCGCCCAACAAGACCCCCTTCGTCGCCGC
GGTGGCCAAGAACCACGAGGGCCACCCGATCGCGCTGCGCATGAGCGTGGTCAAGGGGTTCCGCAAGACCGAGCTGGCGCACTGGGCCGCCAAATTCATC
CACCCCGACAGTATCGTCGTCAGCGACGGCCTCGCCTGCTTTCGCGGGATCGCGGATGCCGGCATCGAGCACCAAGCCATGGTGACCGGCAGCGGCGCGG
GCGGCGTCGAACTGCCCGAGCGCAAGTGGATCAACACTATCCTCGGCAACGTGAAAACCGCCATGAAAGGCACCTACCATAAGGCCGGCCCTCGCCATCT
GCCGCGTTACCTCGCGGAGTTCTGCTATCGGTTCAATCGCCGCTTCGACCTGGCGGCCATGCTGCCGCGCCTCGGCGTTGCGGCCGCGCGGACCCCGCCC
ATGCCCGACCGCCTGCTCAAGTTGGCTGAGTCTCGTTGGTAATCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
951 bp | 316 aa | 92 | 1042 | + | No |
Chemistry : DDE
ORF sequence :
MAKNPIQFQKGLSLHAFLDQYGTEEQCADALFGWRWPGGFVCPECGHPEDFVALHTRDLMQCRHCHHQASLTAGTIFAYTKLPLTVWFLAMYLLTQQKNA
ISALELKRHLGVSYPTAWRIKHKLLQVMLERDADRQLTGVIEIDDVYWGGEVHGETPGRGSPNKTPFVAAVAKNHEGHPIALRMSVVKGFRKTELAHWAA
KFIHPDSIVVSDGLACFRGIADAGIEHQAMVTGSGAGGVELPERKWINTILGNVKTAMKGTYHKAGPRHLPRYLAEFCYRFNRRFDLAAMLPRLGVAAAR
TPPMPDRLLKLAESRW
ISALELKRHLGVSYPTAWRIKHKLLQVMLERDADRQLTGVIEIDDVYWGGEVHGETPGRGSPNKTPFVAAVAKNHEGHPIALRMSVVKGFRKTELAHWAA
KFIHPDSIVVSDGLACFRGIADAGIEHQAMVTGSGAGGVELPERKWINTILGNVKTAMKGTYHKAGPRHLPRYLAEFCYRFNRRFDLAAMLPRLGVAAAR
TPPMPDRLLKLAESRW
Blast result :
Comments
ISTisp1 is 74% aa similar to ISMmet1.
References
1] ISfinder annotation (2017)
2] Luecker,Sebastian. (2015) Direct GenBank submission.
2] Luecker,Sebastian. (2015) Direct GenBank submission.