ISTisp1

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CVPF01000279 ND Thiocapsa sp.
Thiocapsa sp. KS1
DNA section
IS Length : 1047 bp

Ends


IR Length : 23

IRL : CCTGATTACCAACGAGACTCAGCAGGCTCACGTTTTGAGCCACCGGCCGG
IRR : CCTGATTACCAACGAGACTCAGCCAACTTGAGCAGGCGGTCGGGCATGGG

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CCTGATTACCAACGAGACTCAGCAGGCTCACGTTTTGAGCCACCGGCCGGCGCACACTGGCGCCGTATCCACCATCGCCGGGAGTCTGCACATGGCCAAG
AACCCCATCCAGTTCCAGAAGGGTTTGAGTTTACATGCGTTTCTCGATCAGTACGGGACCGAGGAGCAGTGCGCCGACGCACTGTTCGGCTGGCGCTGGC
CGGGGGGCTTCGTCTGCCCGGAGTGCGGGCATCCCGAGGATTTCGTCGCCCTGCACACGCGCGACCTGATGCAGTGCAGGCATTGCCACCACCAGGCCTC
GCTGACCGCCGGGACGATCTTCGCCTACACCAAGCTGCCCCTGACCGTCTGGTTTCTCGCCATGTATCTGCTCACCCAGCAGAAAAACGCCATCTCCGCC
CTCGAACTCAAGCGCCATCTCGGGGTGTCCTACCCCACGGCGTGGAGGATCAAGCACAAGCTCCTGCAGGTCATGCTCGAACGTGACGCCGATCGGCAAT
TGACCGGGGTGATCGAGATCGACGACGTCTACTGGGGCGGCGAGGTTCATGGCGAGACCCCCGGACGCGGCTCGCCCAACAAGACCCCCTTCGTCGCCGC
GGTGGCCAAGAACCACGAGGGCCACCCGATCGCGCTGCGCATGAGCGTGGTCAAGGGGTTCCGCAAGACCGAGCTGGCGCACTGGGCCGCCAAATTCATC
CACCCCGACAGTATCGTCGTCAGCGACGGCCTCGCCTGCTTTCGCGGGATCGCGGATGCCGGCATCGAGCACCAAGCCATGGTGACCGGCAGCGGCGCGG
GCGGCGTCGAACTGCCCGAGCGCAAGTGGATCAACACTATCCTCGGCAACGTGAAAACCGCCATGAAAGGCACCTACCATAAGGCCGGCCCTCGCCATCT
GCCGCGTTACCTCGCGGAGTTCTGCTATCGGTTCAATCGCCGCTTCGACCTGGCGGCCATGCTGCCGCGCCTCGGCGTTGCGGCCGCGCGGACCCCGCCC
ATGCCCGACCGCCTGCTCAAGTTGGCTGAGTCTCGTTGGTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
951 bp316 aa921042+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAKNPIQFQKGLSLHAFLDQYGTEEQCADALFGWRWPGGFVCPECGHPEDFVALHTRDLMQCRHCHHQASLTAGTIFAYTKLPLTVWFLAMYLLTQQKNA
ISALELKRHLGVSYPTAWRIKHKLLQVMLERDADRQLTGVIEIDDVYWGGEVHGETPGRGSPNKTPFVAAVAKNHEGHPIALRMSVVKGFRKTELAHWAA
KFIHPDSIVVSDGLACFRGIADAGIEHQAMVTGSGAGGVELPERKWINTILGNVKTAMKGTYHKAGPRHLPRYLAEFCYRFNRRFDLAAMLPRLGVAAAR
TPPMPDRLLKLAESRW

 

Blast result :
Comments
ISTisp1 is 74% aa similar to ISMmet1.
References
1] ISfinder annotation (2017)
2] Luecker,Sebastian. (2015) Direct GenBank submission.