ISTdr2
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AFWT01000016 | ND | Thiorhodococcus drewsii | Thiorhodococcus drewsii AZ1 |
DNA section
IS Length : 1036 bp
Ends
IR Length : 19/24
IRL : CCTGATTATTTACGAAGCTCAGCCTACGAGTGCTGAGTCGGCGCATACTG
IRR : CCTGATTATTAACATGCCTCAGCCATTTTCAGGAGACGGTGTGGCATCGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTAGGAAAACGTGATGCGA | TCAGCTCTTAACCACGCTTA | 0 | |
AAGGCCGAATCA | AGCGGGCA | AGCAAGGTCGAA | 8 |
AATTTCTGTTCTTACATAGA | CACATAGAAACACCCTCCCT | 0 |
DNA sequence
CCTGATTATTTACGAAGCTCAGCCTACGAGTGCTGAGTCGGCGCATACTGAGACCATCGCGAGTTCCTGGAGAAACGCTGATGGCACAAAACCCGATCCA
ATTTCAGAAGGGTTTGAGCTTGCAGGAATTTATGACGCACTACGGCCGTGAAGCTCTGTGCGTTGAGGCCCTGGAGCAATGGCGCTGGCCGCAGAGGTTC
GTCTGCCCGAGCTGTGGTCACAGCGGCGTACCGGTGCGACTGCGCACGCGCGCCCTGTTGCAGTGCCGCCATTGCCATCACCAAACCTCCGTAACGGCTG
GGACGATCTTCGAGGCGACCAAGCTGCCGCTCACGACCTGGTTCCTGGCGATGTTCTTGTTGACGCAGCAGAAAAACGGCATCTCTGCGCTGGAGCTCAA
GCGTCATCTGGGCGTCTCCTATCTCACCGCTTGGCGGGTCAAGCACAAGCTGTTGCAGGTCATGAAAGAACGTGACGACCAAACCCGACTCAAGGGCGTT
ATCGAGGTCGACGATGCCTACTGGGGCGGGGAGCGTCACGGCGCCAAGCCTGGGCGCGGCTCACCGAACAAGATTCCGTTTATCGCCGCTTTGTCCTGCA
ACGAAGAAGGCCACCCGATCGGGCTATGCCTGGGCAAGGTGGCCGGCTTCCGCACGCGCGAAGTCGAGCGCTTCGCCAAGCGCCATTTCGATCCCAATGC
CATCGTGCTCACCGATGGGTTGGCGTGCTTTCGTGGCGTCGCCAGCGCCGGGTTCGAGCACCAGCCCGTCGTCACCGGTGGCGGCTATCGCAGCATGGCC
TTGCCCGAATTTCAGTGGCTTAACACCGTCCTCGGTAACGTCAAAAACAGCCTGCATGGTTCCTATCATCAGGTGAGCAGCAAGCATCTGCCGCGCTTCC
TGGCCGAGTTTTGCTATCGCTTCAATCGCCGATTTGATCTGGCCTCCATGCTCCCGCGCCTTGGATGGGCTGCCGTGCGAACTCCACCGATGCCACACCG
TCTCCTGAAAATGGCTGAGGCATGTTAATAATCAGG
ATTTCAGAAGGGTTTGAGCTTGCAGGAATTTATGACGCACTACGGCCGTGAAGCTCTGTGCGTTGAGGCCCTGGAGCAATGGCGCTGGCCGCAGAGGTTC
GTCTGCCCGAGCTGTGGTCACAGCGGCGTACCGGTGCGACTGCGCACGCGCGCCCTGTTGCAGTGCCGCCATTGCCATCACCAAACCTCCGTAACGGCTG
GGACGATCTTCGAGGCGACCAAGCTGCCGCTCACGACCTGGTTCCTGGCGATGTTCTTGTTGACGCAGCAGAAAAACGGCATCTCTGCGCTGGAGCTCAA
GCGTCATCTGGGCGTCTCCTATCTCACCGCTTGGCGGGTCAAGCACAAGCTGTTGCAGGTCATGAAAGAACGTGACGACCAAACCCGACTCAAGGGCGTT
ATCGAGGTCGACGATGCCTACTGGGGCGGGGAGCGTCACGGCGCCAAGCCTGGGCGCGGCTCACCGAACAAGATTCCGTTTATCGCCGCTTTGTCCTGCA
ACGAAGAAGGCCACCCGATCGGGCTATGCCTGGGCAAGGTGGCCGGCTTCCGCACGCGCGAAGTCGAGCGCTTCGCCAAGCGCCATTTCGATCCCAATGC
CATCGTGCTCACCGATGGGTTGGCGTGCTTTCGTGGCGTCGCCAGCGCCGGGTTCGAGCACCAGCCCGTCGTCACCGGTGGCGGCTATCGCAGCATGGCC
TTGCCCGAATTTCAGTGGCTTAACACCGTCCTCGGTAACGTCAAAAACAGCCTGCATGGTTCCTATCATCAGGTGAGCAGCAAGCATCTGCCGCGCTTCC
TGGCCGAGTTTTGCTATCGCTTCAATCGCCGATTTGATCTGGCCTCCATGCTCCCGCGCCTTGGATGGGCTGCCGTGCGAACTCCACCGATGCCACACCG
TCTCCTGAAAATGGCTGAGGCATGTTAATAATCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
948 bp | 315 aa | 81 | 1028 | + | No |
Chemistry : DDE
ORF sequence :
MAQNPIQFQKGLSLQEFMTHYGREALCVEALEQWRWPQRFVCPSCGHSGVPVRLRTRALLQCRHCHHQTSVTAGTIFEATKLPLTTWFLAMFLLTQQKNG
ISALELKRHLGVSYLTAWRVKHKLLQVMKERDDQTRLKGVIEVDDAYWGGERHGAKPGRGSPNKIPFIAALSCNEEGHPIGLCLGKVAGFRTREVERFAK
RHFDPNAIVLTDGLACFRGVASAGFEHQPVVTGGGYRSMALPEFQWLNTVLGNVKNSLHGSYHQVSSKHLPRFLAEFCYRFNRRFDLASMLPRLGWAAVR
TPPMPHRLLKMAEAC
ISALELKRHLGVSYLTAWRVKHKLLQVMKERDDQTRLKGVIEVDDAYWGGERHGAKPGRGSPNKIPFIAALSCNEEGHPIGLCLGKVAGFRTREVERFAK
RHFDPNAIVLTDGLACFRGVASAGFEHQPVVTGGGYRSMALPEFQWLNTVLGNVKNSLHGSYHQVSSKHLPRFLAEFCYRFNRRFDLASMLPRLGWAAVR
TPPMPHRLLKMAEAC
Blast result :
Comments
ISTdr2 is 73% aa similar to ISSbe1.
References
1] ISfinder annotation (2017)
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Land,M.L., Hauser,L., Vogl,K., Liu,Z., Imhoff,J., Thiel,V., Frigaard,N.-U., Bryant,D.A. and Woyke,T.J. (2011) Direct GenBank submission.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Land,M.L., Hauser,L., Vogl,K., Liu,Z., Imhoff,J., Thiel,V., Frigaard,N.-U., Bryant,D.A. and Woyke,T.J. (2011) Direct GenBank submission.