ISTdr2

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AFWT01000016 ND Thiorhodococcus drewsii
Thiorhodococcus drewsii AZ1
DNA section
IS Length : 1036 bp

Ends


IR Length : 19/24

IRL : CCTGATTATTTACGAAGCTCAGCCTACGAGTGCTGAGTCGGCGCATACTG
IRR : CCTGATTATTAACATGCCTCAGCCATTTTCAGGAGACGGTGTGGCATCGG

Insertion site


Left flankDirect repeatRight flankDR Length
ATTAGGAAAACGTGATGCGATCAGCTCTTAACCACGCTTA0
AAGGCCGAATCAAGCGGGCAAGCAAGGTCGAA8
AATTTCTGTTCTTACATAGACACATAGAAACACCCTCCCT0

DNA sequence

CCTGATTATTTACGAAGCTCAGCCTACGAGTGCTGAGTCGGCGCATACTGAGACCATCGCGAGTTCCTGGAGAAACGCTGATGGCACAAAACCCGATCCA
ATTTCAGAAGGGTTTGAGCTTGCAGGAATTTATGACGCACTACGGCCGTGAAGCTCTGTGCGTTGAGGCCCTGGAGCAATGGCGCTGGCCGCAGAGGTTC
GTCTGCCCGAGCTGTGGTCACAGCGGCGTACCGGTGCGACTGCGCACGCGCGCCCTGTTGCAGTGCCGCCATTGCCATCACCAAACCTCCGTAACGGCTG
GGACGATCTTCGAGGCGACCAAGCTGCCGCTCACGACCTGGTTCCTGGCGATGTTCTTGTTGACGCAGCAGAAAAACGGCATCTCTGCGCTGGAGCTCAA
GCGTCATCTGGGCGTCTCCTATCTCACCGCTTGGCGGGTCAAGCACAAGCTGTTGCAGGTCATGAAAGAACGTGACGACCAAACCCGACTCAAGGGCGTT
ATCGAGGTCGACGATGCCTACTGGGGCGGGGAGCGTCACGGCGCCAAGCCTGGGCGCGGCTCACCGAACAAGATTCCGTTTATCGCCGCTTTGTCCTGCA
ACGAAGAAGGCCACCCGATCGGGCTATGCCTGGGCAAGGTGGCCGGCTTCCGCACGCGCGAAGTCGAGCGCTTCGCCAAGCGCCATTTCGATCCCAATGC
CATCGTGCTCACCGATGGGTTGGCGTGCTTTCGTGGCGTCGCCAGCGCCGGGTTCGAGCACCAGCCCGTCGTCACCGGTGGCGGCTATCGCAGCATGGCC
TTGCCCGAATTTCAGTGGCTTAACACCGTCCTCGGTAACGTCAAAAACAGCCTGCATGGTTCCTATCATCAGGTGAGCAGCAAGCATCTGCCGCGCTTCC
TGGCCGAGTTTTGCTATCGCTTCAATCGCCGATTTGATCTGGCCTCCATGCTCCCGCGCCTTGGATGGGCTGCCGTGCGAACTCCACCGATGCCACACCG
TCTCCTGAAAATGGCTGAGGCATGTTAATAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
948 bp315 aa811028+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAQNPIQFQKGLSLQEFMTHYGREALCVEALEQWRWPQRFVCPSCGHSGVPVRLRTRALLQCRHCHHQTSVTAGTIFEATKLPLTTWFLAMFLLTQQKNG
ISALELKRHLGVSYLTAWRVKHKLLQVMKERDDQTRLKGVIEVDDAYWGGERHGAKPGRGSPNKIPFIAALSCNEEGHPIGLCLGKVAGFRTREVERFAK
RHFDPNAIVLTDGLACFRGVASAGFEHQPVVTGGGYRSMALPEFQWLNTVLGNVKNSLHGSYHQVSSKHLPRFLAEFCYRFNRRFDLASMLPRLGWAAVR
TPPMPHRLLKMAEAC

 

Blast result :
Comments
ISTdr2 is 73% aa similar to ISSbe1.
References
1] ISfinder annotation (2017)
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Land,M.L., Hauser,L., Vogl,K., Liu,Z., Imhoff,J., Thiel,V., Frigaard,N.-U., Bryant,D.A. and Woyke,T.J. (2011) Direct GenBank submission.