ISDeae1

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FRFE01000020 ND Desulfopila aestuarii
Desulfopila aestuarii DSM 18488
DNA section
IS Length : 1057 bp

Ends


IR Length : 23/30

IRL : TCTGATTACTTATAAAGCTCAGCTATTTTTTAGGGGTGTCACTATATGAG
IRR : TTTGATTACCCACAAAGCTCAGCCAACTTTATGAGCTTTTGTGGCATTGG

Insertion site


Left flankDirect repeatRight flankDR Length
GCTGTACCACTATTTTTAATATTTTTATTGTGTAAATTTC0

DNA sequence

TCTGATTACTTATAAAGCTCAGCTATTTTTTAGGGGTGTCACTATATGAGTACCCGCCCCTGTTACACTACCTCTATACCGTTAAACAAATGGAGGTAAA
CATGTCGCAAAACGTAATCCAGTTCCAACCAGGTATCAGTTTGCAAGAATTTATCTCAAAATACGGTTCAGAAGAGCAATGCTATCAAGCACTTTTCAGA
TGGCGATGGCCCAATGGATTTAGATGTCCAGAATGTGGTGGTGATCGCTATTGCTCTTTGAAATCGAGAAAACTCATGCAGTGCAACAGTTGCCGCTCTC
AGATTTCAGTTACGGCTAGAACCATCTTTGACTCTACCAAGCTACCTCTGACTACTTGGTTTCTCAGTATATATATCGTTACACAATCTAAAATCAGTAT
TTCAGCTCTCAGTTTGAAGAGAACTGTTGGTGTGTCTTACAATACAGCCTTATTGATCAAGCATAAAATCCAACAAGTTATGAAAGAACGAGACGATTCC
AAACCGATCTCAGCAACCCTCGTGCAAGTTGACGATGCTTATTGGGGCGGCAAAAAACGTGATGGCCGGAGAGGCCGCGGAGCAACAGGTAAAATACCTT
TTGTTGCTGCAGTTTCAACCAATACGGAAGGCCTTCCAGTTCATATGCGTTTTAGCCAAGTGCCCTCATTTTCAAAGAAATCTATCATCGATTGGGCAGA
CAAACATCTTTGTAAGGGTAGCGATGTTGTCACCGACGGCCTCCTCGGTTTTGAAGGCTTCGATGATGCAGATTTCTCACACAAAGTTATTATCACTGGA
GGTGGACCTGAGAGTGTCAAAATGGCTGATTTCAAATGGGTTAATACAGTCATTGGTAACGTTAAGAGGTCATTTCATGGCACGTTCCACGCCATCAGCA
AAAAACACTTTGGCAGGTACCTCGCTGAGTTTTGTTATCGTTTCAATCGTAGATTTGATCTGCGACAGTTGATACCCAGATTTACTTATGTGGCTCTAAG
AACGCCACCAATGCCACAAAAGCTCATAAAGTTGGCTGAGCTTTGTGGGTAATCAAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
951 bp316 aa1021052+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSQNVIQFQPGISLQEFISKYGSEEQCYQALFRWRWPNGFRCPECGGDRYCSLKSRKLMQCNSCRSQISVTARTIFDSTKLPLTTWFLSIYIVTQSKISI
SALSLKRTVGVSYNTALLIKHKIQQVMKERDDSKPISATLVQVDDAYWGGKKRDGRRGRGATGKIPFVAAVSTNTEGLPVHMRFSQVPSFSKKSIIDWAD
KHLCKGSDVVTDGLLGFEGFDDADFSHKVIITGGGPESVKMADFKWVNTVIGNVKRSFHGTFHAISKKHFGRYLAEFCYRFNRRFDLRQLIPRFTYVALR
TPPMPQKLIKLAELCG

 

Blast result :
Comments
ISDeae1 is 74% aa similar to ISCosp1.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.