ISDeba2

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LADS01000025 ND Desulfobulbaceae bacterium
Desulfobulbaceae bacterium BRH_c16a
DNA section
IS Length : 1060 bp

Ends


IR Length : 27/35

IRL : TCTGATTACTTACGAAACTAAGCCATTTATTTCAGGGGGTGCTCACTCTG
IRR : TCTGATTACCTACAAGACTCAGCCACTTTCATCAGCCGCTGGGGTGTGGG

Insertion site


Left flankDirect repeatRight flankDR Length
CGTTTCGGCAAATTTATTAACCTTGGCC8

DNA sequence

TCTGATTACTTACGAAACTAAGCCATTTATTTCAGGGGGTGCTCACTCTGTGATACCCCTCACCTGGTAACCTACTTCCAAGCCTGAACAAGGAGGGGGC
TACCATGTGTAAAAACAAAATTCAATTTCAATCAGGTCTCAGTTTGCATAGTTTCTTGTCTCAATACGGATCGGAAGATCAATGTCGTAACGCCTTGGTT
CATTGGCGGTGGCCGCAAGGCTTTGTTTGCCCATCGTGTGGTCATGACAAGTATTGCCGGTTGAAAACCAGAGATCTCTTTCAATGCAACAGCTGCCGAA
TGCAGATCTCTATCACCGCAGGAACTATATTTGCCTCAACAAAACTCTCGCTTACCACTTGGTTCCTTTCGATCTATCTGATTACACAATCAAAGGTCAG
CGTATCTGCACTGAGCCTCAAGCGTACAATAGGTGTTTCATATAACACAGCTCTATTGATCAAGCATAAAATACAGCAAGTTATGAAAGAGCGTGATGAT
AGCAAACCTCTCGATGCTGCATATATCCAGGTAGACGATGCCTACTGGGGAGGCAAAAAGCGTGATGGCAAGCGAGGAAGAGGCGCTACCGGGAAAATCC
CTTTCGTCGCAGCAGTATCCATAGGTGACAAGGGTCATCCACTCGCAATTCGTTTCAGTCAAGTGAATGGATTTTCCAAAAAAGCAATCAAAGCTTGGGC
TGATAAACACCTGGCTCCGAAGAGAAATGTGGTCACCGACGGCCTCGAATGTTTCACTGCTTTTCAAGAGTGTGGCCACGAACATATTGCCATAATCACC
GGTGGTGGTCCTCAAAGCGTTGAGATGCCAGAATTTAAATGGGTAAACACGATTATTGGCAATGTAAAAAACGCCTTGCACGGTACTTTTCATGCGATCA
GCAAAAAGCATTTTCCGCGTTACCTTGCTGAGTTTTGCTACCGATTCAACCGGCGGTACAACCTGGAGCAGATGGTAGCCCGCTTCGGGTACGTCGCCGT
GAGAACCACGCCCACACCCCAGCGGCTGATGAAAGTGGCTGAGTCTTGTAGGTAATCAGA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
951 bp316 aa1051055+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MCKNKIQFQSGLSLHSFLSQYGSEDQCRNALVHWRWPQGFVCPSCGHDKYCRLKTRDLFQCNSCRMQISITAGTIFASTKLSLTTWFLSIYLITQSKVSV
SALSLKRTIGVSYNTALLIKHKIQQVMKERDDSKPLDAAYIQVDDAYWGGKKRDGKRGRGATGKIPFVAAVSIGDKGHPLAIRFSQVNGFSKKAIKAWAD
KHLAPKRNVVTDGLECFTAFQECGHEHIAIITGGGPQSVEMPEFKWVNTIIGNVKNALHGTFHAISKKHFPRYLAEFCYRFNRRYNLEQMVARFGYVAVR
TTPTPQRLMKVAESCR

 

Blast result :
Comments
ISDeba2 is 74% aa similar to ISEc70 .
References
1] ISfinder annotation (2017)
2] Bagnoud,A., Chourey,K., Hettich,R.L., de Bruijn,I., Andersson,A.F., Leupin,O.X., Schwyn,B. and Bernier-Latmani,R. (2015) Direct GenBank submission.