ISHps4
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP009237 | ND | Haemophilus parasuis | Haemophilus parasuis KL0318 |
DNA section
IS Length : 713 bp
Ends
IR Length : 17/18
IRL : GGGGCCGTATTAGATTAGCAAGTATGTTAGTCTATAAAAATGAAAATAAC
IRR : GGGGCTGTATTAGATTAGTCCTAAATTTCACACCATTTTCTCAACATTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTAAGCCGGAATAAATATTTT | ACTATTTTTATAACTATACA | 0 |
DNA sequence
GGGGCCGTATTAGATTAGCAAGTATGTTAGTCTATAAAAATGAAAATAACTCATTGTAAATTAAAGAAATCCATACAAAAAAATCTCCTTGAATTTTTTG
TATTAGAAGTCACTGTCCGTTCTGCGGCAAATTTGTTAGAGATAAATGATAACTCTGCTGCACTGTTTTACCGCAAAATCCGCGAGGTTATCAGTTATCA
TTTAGCCCTTGAAGCAGATGAAGTATTTGACGGACAAATTGAGCTGGATGAAAGCTATTTTGGTGGACATCGTAAAGGAAAACGAGGTCGTGGTGCGGCA
GGAAAAGTGGCTGTTTTTAGCATATTAAAACGACAAGGTAAAGTGTTTACTGTAGTCGTCAATGACACGAAAATAAGAACGTTAATGCCTGTTATAGCAA
GGAAAATCAAGCCTGATAGCTGGGTTTATACAGATACTTACCATAGTTATGATGCCCTTGATGTAAGCGAATTTCACCACGAACGAATTAGCCATTCGGA
GCTGTTTGCAGTGAAACAAAATCACATCAACGGCATTGAAAATTTTTGGAGTCAAGCCAAGCGGATACTCCGAAAATATAATGGAATTGACCGAAAAAGT
TTCCCTTTATTCTTGAAAGAATGTGAATTTCGGTTTAACTTTGGGGCACCAAAAGAGTGACTTAAAATGTTGAGAAAATGGTGTGAAATTTAGGACTAAT
CTAATACAGCCCC
TATTAGAAGTCACTGTCCGTTCTGCGGCAAATTTGTTAGAGATAAATGATAACTCTGCTGCACTGTTTTACCGCAAAATCCGCGAGGTTATCAGTTATCA
TTTAGCCCTTGAAGCAGATGAAGTATTTGACGGACAAATTGAGCTGGATGAAAGCTATTTTGGTGGACATCGTAAAGGAAAACGAGGTCGTGGTGCGGCA
GGAAAAGTGGCTGTTTTTAGCATATTAAAACGACAAGGTAAAGTGTTTACTGTAGTCGTCAATGACACGAAAATAAGAACGTTAATGCCTGTTATAGCAA
GGAAAATCAAGCCTGATAGCTGGGTTTATACAGATACTTACCATAGTTATGATGCCCTTGATGTAAGCGAATTTCACCACGAACGAATTAGCCATTCGGA
GCTGTTTGCAGTGAAACAAAATCACATCAACGGCATTGAAAATTTTTGGAGTCAAGCCAAGCGGATACTCCGAAAATATAATGGAATTGACCGAAAAAGT
TTCCCTTTATTCTTGAAAGAATGTGAATTTCGGTTTAACTTTGGGGCACCAAAAGAGTGACTTAAAATGTTGAGAAAATGGTGTGAAATTTAGGACTAAT
CTAATACAGCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
621 bp | 206 aa | 40 | 660 | + | No |
Chemistry : DDE
ORF sequence :
MKITHCKLKKSIQKNLLEFFVLEVTVRSAANLLEINDNSAALFYRKIREVISYHLALEADEVFDGQIELDESYFGGHRKGKRGRGAAGKVAVFSILKRQG
KVFTVVVNDTKIRTLMPVIARKIKPDSWVYTDTYHSYDALDVSEFHHERISHSELFAVKQNHINGIENFWSQAKRILRKYNGIDRKSFPLFLKECEFRFN
FGAPKE
KVFTVVVNDTKIRTLMPVIARKIKPDSWVYTDTYHSYDALDVSEFHHERISHSELFAVKQNHINGIENFWSQAKRILRKYNGIDRKSFPLFLKECEFRFN
FGAPKE
Blast result :
Comments
ISHps4 is 94% aa similar to IS1016C2.
References
1] ISfinder annotation (2017)
2] Li,P., Leung,F.C., Bao,W., Hou,L. and Jiang,J. (2014) Direct GenBank submission.
2] Li,P., Leung,F.C., Bao,W., Hou,L. and Jiang,J. (2014) Direct GenBank submission.