ISHps4

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP009237 ND Haemophilus parasuis
Haemophilus parasuis KL0318
DNA section
IS Length : 713 bp

Ends


IR Length : 17/18

IRL : GGGGCCGTATTAGATTAGCAAGTATGTTAGTCTATAAAAATGAAAATAAC
IRR : GGGGCTGTATTAGATTAGTCCTAAATTTCACACCATTTTCTCAACATTTT

Insertion site


Left flankDirect repeatRight flankDR Length
TTAAGCCGGAATAAATATTTTACTATTTTTATAACTATACA0

DNA sequence

GGGGCCGTATTAGATTAGCAAGTATGTTAGTCTATAAAAATGAAAATAACTCATTGTAAATTAAAGAAATCCATACAAAAAAATCTCCTTGAATTTTTTG
TATTAGAAGTCACTGTCCGTTCTGCGGCAAATTTGTTAGAGATAAATGATAACTCTGCTGCACTGTTTTACCGCAAAATCCGCGAGGTTATCAGTTATCA
TTTAGCCCTTGAAGCAGATGAAGTATTTGACGGACAAATTGAGCTGGATGAAAGCTATTTTGGTGGACATCGTAAAGGAAAACGAGGTCGTGGTGCGGCA
GGAAAAGTGGCTGTTTTTAGCATATTAAAACGACAAGGTAAAGTGTTTACTGTAGTCGTCAATGACACGAAAATAAGAACGTTAATGCCTGTTATAGCAA
GGAAAATCAAGCCTGATAGCTGGGTTTATACAGATACTTACCATAGTTATGATGCCCTTGATGTAAGCGAATTTCACCACGAACGAATTAGCCATTCGGA
GCTGTTTGCAGTGAAACAAAATCACATCAACGGCATTGAAAATTTTTGGAGTCAAGCCAAGCGGATACTCCGAAAATATAATGGAATTGACCGAAAAAGT
TTCCCTTTATTCTTGAAAGAATGTGAATTTCGGTTTAACTTTGGGGCACCAAAAGAGTGACTTAAAATGTTGAGAAAATGGTGTGAAATTTAGGACTAAT
CTAATACAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
621 bp206 aa40660+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKITHCKLKKSIQKNLLEFFVLEVTVRSAANLLEINDNSAALFYRKIREVISYHLALEADEVFDGQIELDESYFGGHRKGKRGRGAAGKVAVFSILKRQG
KVFTVVVNDTKIRTLMPVIARKIKPDSWVYTDTYHSYDALDVSEFHHERISHSELFAVKQNHINGIENFWSQAKRILRKYNGIDRKSFPLFLKECEFRFN
FGAPKE

 

Blast result :
Comments
ISHps4 is 94% aa similar to IS1016C2.
References
1] ISfinder annotation (2017)
2] Li,P., Leung,F.C., Bao,W., Hou,L. and Jiang,J. (2014) Direct GenBank submission.