ISGan1

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s) ISGa1
Accession numberTranspositionOriginHost
HQ644121 ND Gallibacterium anatis
Gallibacterium anatis F 149
DNA section
IS Length : 713 bp

Ends


IR Length : 19

IRL : GGGGCTGAAGTAGATTAGCACTTATGCTAAGCTACAAAAATGAAGATAAC
IRR : GGGGCTGAAGTAGATTAGCGTTAAATCTGACACCATTTCCGCAGGATTTT

Insertion site


Left flankDirect repeatRight flankDR Length
CGCAGCATCGGATTTTAAAAACAAATCG8

DNA sequence

GGGGCTGAAGTAGATTAGCACTTATGCTAAGCTACAAAAATGAAGATAACCAATTGTAAACTAAAGAAATCTATACAAAGAAAACTGCTTGAATTTTTTG
TATTAGAAGTAACAGCACGATCAGCAGCAGATTTGCTTGGCATTCAAGCCAATACTGCCATCTTGTTTTATCGAAAAATTCGTCTCGTTATCAGCCATCA
TTTAGCACTACAAGCACATGAACTTTTCGATGGCGAAGTAGAGTTAGATGAAAGCTATTTTGGTGGTGTGCGAAAAGGGAAAAGAGGTCGGGGTGCAGCT
GGTAAAATGGTGGTGTTTGGCATGCTTAAACGCCATGGAAAAGTTTACACAGTAACTGTACAAAACACTAAGACTGATACCTTACTTACTGTTATTAAAA
AGAAAATACAACCAGATAGCATTGTTTATACAGATTGTTATCATAGCTATGATGTGCTAGATGTTAGTGAGTTTACGCACTATAGAATTAACCACAGTAC
TCATTTTGCTGAGCGGCGAAATCACATTAATGGGATAGAGAATTTTTGGAATCAAGCAAAGCGTGTGCTAAGAAAGTATAATGGAATTGATCGAAAATCT
TTCCCTCTTTTTTTGAAAGAATGTGAGTTTCGTTTCAACTATGGGACACCATCTCAACAGCTCAAAATCCTGCGGAAATGGTGTCAGATTTAACGCTAAT
CTACTTCAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
654 bp217 aa40693+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKITNCKLKKSIQRKLLEFFVLEVTARSAADLLGIQANTAILFYRKIRLVISHHLALQAHELFDGEVELDESYFGGVRKGKRGRGAAGKMVVFGMLKRHG
KVYTVTVQNTKTDTLLTVIKKKIQPDSIVYTDCYHSYDVLDVSEFTHYRINHSTHFAERRNHINGIENFWNQAKRVLRKYNGIDRKSFPLFLKECEFRFN
YGTPSQQLKILRKWCQI

 

Blast result :
Comments
ISGan1 (ISGa1) is 88% aa similar to IS1016C2.
References
1] ISfinder submission (2017)
2] Kristensen,B.M., Frees,D. and Bojesen,A.M. (2011) Vet. Microbiol. 153 (1-2), 116-123.