ISGan1
- Family IS1595
- Group IS1016
Isoform Synonym(s) ISGa1
Accession number | Transposition | Origin | Host |
---|---|---|---|
HQ644121 | ND | Gallibacterium anatis | Gallibacterium anatis F 149 |
DNA section
IS Length : 713 bp
Ends
IR Length : 19
IRL : GGGGCTGAAGTAGATTAGCACTTATGCTAAGCTACAAAAATGAAGATAAC
IRR : GGGGCTGAAGTAGATTAGCGTTAAATCTGACACCATTTCCGCAGGATTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGCAGCATCG | GATTTTAA | AAACAAATCG | 8 |
DNA sequence
GGGGCTGAAGTAGATTAGCACTTATGCTAAGCTACAAAAATGAAGATAACCAATTGTAAACTAAAGAAATCTATACAAAGAAAACTGCTTGAATTTTTTG
TATTAGAAGTAACAGCACGATCAGCAGCAGATTTGCTTGGCATTCAAGCCAATACTGCCATCTTGTTTTATCGAAAAATTCGTCTCGTTATCAGCCATCA
TTTAGCACTACAAGCACATGAACTTTTCGATGGCGAAGTAGAGTTAGATGAAAGCTATTTTGGTGGTGTGCGAAAAGGGAAAAGAGGTCGGGGTGCAGCT
GGTAAAATGGTGGTGTTTGGCATGCTTAAACGCCATGGAAAAGTTTACACAGTAACTGTACAAAACACTAAGACTGATACCTTACTTACTGTTATTAAAA
AGAAAATACAACCAGATAGCATTGTTTATACAGATTGTTATCATAGCTATGATGTGCTAGATGTTAGTGAGTTTACGCACTATAGAATTAACCACAGTAC
TCATTTTGCTGAGCGGCGAAATCACATTAATGGGATAGAGAATTTTTGGAATCAAGCAAAGCGTGTGCTAAGAAAGTATAATGGAATTGATCGAAAATCT
TTCCCTCTTTTTTTGAAAGAATGTGAGTTTCGTTTCAACTATGGGACACCATCTCAACAGCTCAAAATCCTGCGGAAATGGTGTCAGATTTAACGCTAAT
CTACTTCAGCCCC
TATTAGAAGTAACAGCACGATCAGCAGCAGATTTGCTTGGCATTCAAGCCAATACTGCCATCTTGTTTTATCGAAAAATTCGTCTCGTTATCAGCCATCA
TTTAGCACTACAAGCACATGAACTTTTCGATGGCGAAGTAGAGTTAGATGAAAGCTATTTTGGTGGTGTGCGAAAAGGGAAAAGAGGTCGGGGTGCAGCT
GGTAAAATGGTGGTGTTTGGCATGCTTAAACGCCATGGAAAAGTTTACACAGTAACTGTACAAAACACTAAGACTGATACCTTACTTACTGTTATTAAAA
AGAAAATACAACCAGATAGCATTGTTTATACAGATTGTTATCATAGCTATGATGTGCTAGATGTTAGTGAGTTTACGCACTATAGAATTAACCACAGTAC
TCATTTTGCTGAGCGGCGAAATCACATTAATGGGATAGAGAATTTTTGGAATCAAGCAAAGCGTGTGCTAAGAAAGTATAATGGAATTGATCGAAAATCT
TTCCCTCTTTTTTTGAAAGAATGTGAGTTTCGTTTCAACTATGGGACACCATCTCAACAGCTCAAAATCCTGCGGAAATGGTGTCAGATTTAACGCTAAT
CTACTTCAGCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
654 bp | 217 aa | 40 | 693 | + | No |
Chemistry : DDE
ORF sequence :
MKITNCKLKKSIQRKLLEFFVLEVTARSAADLLGIQANTAILFYRKIRLVISHHLALQAHELFDGEVELDESYFGGVRKGKRGRGAAGKMVVFGMLKRHG
KVYTVTVQNTKTDTLLTVIKKKIQPDSIVYTDCYHSYDVLDVSEFTHYRINHSTHFAERRNHINGIENFWNQAKRVLRKYNGIDRKSFPLFLKECEFRFN
YGTPSQQLKILRKWCQI
KVYTVTVQNTKTDTLLTVIKKKIQPDSIVYTDCYHSYDVLDVSEFTHYRINHSTHFAERRNHINGIENFWNQAKRVLRKYNGIDRKSFPLFLKECEFRFN
YGTPSQQLKILRKWCQI
Blast result :
Comments
ISGan1 (ISGa1) is 88% aa similar to IS1016C2.
References
1] ISfinder submission (2017)
2] Kristensen,B.M., Frees,D. and Bojesen,A.M. (2011) Vet. Microbiol. 153 (1-2), 116-123.
2] Kristensen,B.M., Frees,D. and Bojesen,A.M. (2011) Vet. Microbiol. 153 (1-2), 116-123.