ISDae1

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002431 ND Desulfovibrio aespoeensis
Desulfovibrio aespoeensis Aspo-2
DNA section
IS Length : 722 bp

Ends


IR Length : 17

IRL : GGGGCTGTCCTAGCTAAGCACTCCGCTTAGGCTTAGGATGGCATCATGTA
IRR : GGGGCTGTCCTAGCTAACTAGGATTTTCCCCGCTGATTAATCCACTTTTT

Insertion site


Left flankDirect repeatRight flankDR Length
TAATTCATTATTTGTTTTTAATAACCTG8
GTGAAAACGTAATAATTTTTTGGGATGGCAGA8
ACTCGATGGTGTTTCTTTTCAAAAAGAATATGCACCCCCA0

DNA sequence

GGGGCTGTCCTAGCTAAGCACTCCGCTTAGGCTTAGGATGGCATCATGTACGAAAGGAAAAGCAGGCTCAGCCCACAGAAGCGGGCCAGGCTCATTGAGC
ACTTCATTGCCGGCACAACGGCACGTGCTGCCGCTCAACTGGTGGACGTCAACAAGAACACGGCGGCCACGTTTTTCACTCGGCTGAGGAAAATCATTGC
CGATGAGATGGAAAAGGCATCGCCATTCGACGGTGAGATTGAAGTTGATGAGAGCTATTTCGGAGGAGTCAGGAAAGGCAAGCGCGGTCGAGGTGCTGCA
GGGAAAGTCCCTGTTTTCGGCTTGTTGAAGCGTGGAGGGCGGGTTTATACGGTCATGATCCCAAACGCCCGGAGCACGACACTTCTCCCCATCATGGAGC
GCATGATCTTGCCGGACAGTATCGTGTACACTGACGCTTTCAGAAGCTATGATGCGCTGGATGTCTCGGACTTCCACCATGTGCGGATCAATCACTCTGA
AAGGTTCGTGGACAGGCAAAACCACATCAATGGGATTGAGAACTTTTGGAACCAAGCCAAGCGCCACCTCCGCCGGTTCAACGGCATCCCCAGGGACAGT
TTTTTCCTGTTCCTTAAAGAGTGTGAGTGGCGGTTCAATTGTGGTGACCATAAAATGTTACTCAAGCAACTGAAAAAGTGGATTAATCAGCGGGGAAAAT
CCTAGTTAGCTAGGACAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
660 bp219 aa46705+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MYERKSRLSPQKRARLIEHFIAGTTARAAAQLVDVNKNTAATFFTRLRKIIADEMEKASPFDGEIEVDESYFGGVRKGKRGRGAAGKVPVFGLLKRGGRV
YTVMIPNARSTTLLPIMERMILPDSIVYTDAFRSYDALDVSDFHHVRINHSERFVDRQNHINGIENFWNQAKRHLRRFNGIPRDSFFLFLKECEWRFNCG
DHKMLLKQLKKWINQRGKS

 

Blast result :
Comments
ISDae1 is 79% aa similar to ISNesp1.
References
1] ISfinder annotation (2017)
2] Pedersen,K., Bengtsson,A., Edlund,J., Rabe,L., Hazen,T., Chakraborty,R., Goodwin,L. and Shapiro,N. (2014) Genome Announc 2 (3), e00509-14.