ISDae1
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002431 | ND | Desulfovibrio aespoeensis | Desulfovibrio aespoeensis Aspo-2 |
DNA section
IS Length : 722 bp
Ends
IR Length : 17
IRL : GGGGCTGTCCTAGCTAAGCACTCCGCTTAGGCTTAGGATGGCATCATGTA
IRR : GGGGCTGTCCTAGCTAACTAGGATTTTCCCCGCTGATTAATCCACTTTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAATTCATTA | TTTGTTTT | TAATAACCTG | 8 |
GTGAAAACGTAA | TAATTTTT | TGGGATGGCAGA | 8 |
ACTCGATGGTGTTTCTTTTC | AAAAAGAATATGCACCCCCA | 0 |
DNA sequence
GGGGCTGTCCTAGCTAAGCACTCCGCTTAGGCTTAGGATGGCATCATGTACGAAAGGAAAAGCAGGCTCAGCCCACAGAAGCGGGCCAGGCTCATTGAGC
ACTTCATTGCCGGCACAACGGCACGTGCTGCCGCTCAACTGGTGGACGTCAACAAGAACACGGCGGCCACGTTTTTCACTCGGCTGAGGAAAATCATTGC
CGATGAGATGGAAAAGGCATCGCCATTCGACGGTGAGATTGAAGTTGATGAGAGCTATTTCGGAGGAGTCAGGAAAGGCAAGCGCGGTCGAGGTGCTGCA
GGGAAAGTCCCTGTTTTCGGCTTGTTGAAGCGTGGAGGGCGGGTTTATACGGTCATGATCCCAAACGCCCGGAGCACGACACTTCTCCCCATCATGGAGC
GCATGATCTTGCCGGACAGTATCGTGTACACTGACGCTTTCAGAAGCTATGATGCGCTGGATGTCTCGGACTTCCACCATGTGCGGATCAATCACTCTGA
AAGGTTCGTGGACAGGCAAAACCACATCAATGGGATTGAGAACTTTTGGAACCAAGCCAAGCGCCACCTCCGCCGGTTCAACGGCATCCCCAGGGACAGT
TTTTTCCTGTTCCTTAAAGAGTGTGAGTGGCGGTTCAATTGTGGTGACCATAAAATGTTACTCAAGCAACTGAAAAAGTGGATTAATCAGCGGGGAAAAT
CCTAGTTAGCTAGGACAGCCCC
ACTTCATTGCCGGCACAACGGCACGTGCTGCCGCTCAACTGGTGGACGTCAACAAGAACACGGCGGCCACGTTTTTCACTCGGCTGAGGAAAATCATTGC
CGATGAGATGGAAAAGGCATCGCCATTCGACGGTGAGATTGAAGTTGATGAGAGCTATTTCGGAGGAGTCAGGAAAGGCAAGCGCGGTCGAGGTGCTGCA
GGGAAAGTCCCTGTTTTCGGCTTGTTGAAGCGTGGAGGGCGGGTTTATACGGTCATGATCCCAAACGCCCGGAGCACGACACTTCTCCCCATCATGGAGC
GCATGATCTTGCCGGACAGTATCGTGTACACTGACGCTTTCAGAAGCTATGATGCGCTGGATGTCTCGGACTTCCACCATGTGCGGATCAATCACTCTGA
AAGGTTCGTGGACAGGCAAAACCACATCAATGGGATTGAGAACTTTTGGAACCAAGCCAAGCGCCACCTCCGCCGGTTCAACGGCATCCCCAGGGACAGT
TTTTTCCTGTTCCTTAAAGAGTGTGAGTGGCGGTTCAATTGTGGTGACCATAAAATGTTACTCAAGCAACTGAAAAAGTGGATTAATCAGCGGGGAAAAT
CCTAGTTAGCTAGGACAGCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
660 bp | 219 aa | 46 | 705 | + | No |
Chemistry : DDE
ORF sequence :
MYERKSRLSPQKRARLIEHFIAGTTARAAAQLVDVNKNTAATFFTRLRKIIADEMEKASPFDGEIEVDESYFGGVRKGKRGRGAAGKVPVFGLLKRGGRV
YTVMIPNARSTTLLPIMERMILPDSIVYTDAFRSYDALDVSDFHHVRINHSERFVDRQNHINGIENFWNQAKRHLRRFNGIPRDSFFLFLKECEWRFNCG
DHKMLLKQLKKWINQRGKS
YTVMIPNARSTTLLPIMERMILPDSIVYTDAFRSYDALDVSDFHHVRINHSERFVDRQNHINGIENFWNQAKRHLRRFNGIPRDSFFLFLKECEWRFNCG
DHKMLLKQLKKWINQRGKS
Blast result :
Comments
ISDae1 is 79% aa similar to ISNesp1.
References
1] ISfinder annotation (2017)
2] Pedersen,K., Bengtsson,A., Edlund,J., Rabe,L., Hazen,T., Chakraborty,R., Goodwin,L. and Shapiro,N. (2014) Genome Announc 2 (3), e00509-14.
2] Pedersen,K., Bengtsson,A., Edlund,J., Rabe,L., Hazen,T., Chakraborty,R., Goodwin,L. and Shapiro,N. (2014) Genome Announc 2 (3), e00509-14.