ISPsh1
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LT575468 | ND | Plesiomonas shigelloides | Plesiomonas shigelloides NCTC10360 |
DNA section
IS Length : 717 bp
Ends
IR Length : 17
IRL : GGGGCTGTCCTAGATAACTAAGATGATCTAGGATTGTTCCATGAGGAAAA
IRR : GGGGCTGTCCTAGATAAGGTTTAAATTTTACCTTTAACTATATGTTTTAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAGGGGATGT | CAAAAATA | TATTTTTCAT | 8 |
DNA sequence
GGGGCTGTCCTAGATAACTAAGATGATCTAGGATTGTTCCATGAGGAAAAGTAGGCTCAGCCAGTACAAACAGGAACGGTTATTTGAGCTATTTATTGCA
GGCTCCACTGCTCGTATTGCCGCAGAGCTGGTTGGAGTCCATAGGAACACTGCCGCTTACTATTTTCACCGGCTCAGAGTCCTGATAGCCGAGCACGTTG
ATAATAACTCTCGGTTTGATGGCGAGATTGAATTGGACGAAAGTTATTTCGGTGGTCATCGTAAAGGCCAGCGTGGCAGAGGTGCAGCTGGAAAAGTGCC
TGTTTTCGGGCTTCTCAAACGTGGTGGAAAGGTTTATACCAAGGTCATACCTGACGCTAAATCGCGGACATTACTGCCAATAATTGAGTCAAAAATTTAC
CCAGATAGCATCGTCTATACCGATAACTTTGCAAGTTACGATGTACTGGATGTGAGCAATTTTAAGCATTACAGGATTAATCACAGCACTCAGTTTGTCG
ACAACAAAGAGCGGCAAAATCACATCAATGGCATTGAGAATTTTTGGAACCAAGCGAAACGTCATATGCGTAAGTTTAACGGCATTCCTAAGGCTCATTT
TGAACTGTACCTGAAGGAGTGTGAGTGGCGATTTAACACACCAAGCGCCAAACAGCAATTAACTATGCTAAAACATATAGTTAAAGGTAAAATTTAAACC
TTATCTAGGACAGCCCC
GGCTCCACTGCTCGTATTGCCGCAGAGCTGGTTGGAGTCCATAGGAACACTGCCGCTTACTATTTTCACCGGCTCAGAGTCCTGATAGCCGAGCACGTTG
ATAATAACTCTCGGTTTGATGGCGAGATTGAATTGGACGAAAGTTATTTCGGTGGTCATCGTAAAGGCCAGCGTGGCAGAGGTGCAGCTGGAAAAGTGCC
TGTTTTCGGGCTTCTCAAACGTGGTGGAAAGGTTTATACCAAGGTCATACCTGACGCTAAATCGCGGACATTACTGCCAATAATTGAGTCAAAAATTTAC
CCAGATAGCATCGTCTATACCGATAACTTTGCAAGTTACGATGTACTGGATGTGAGCAATTTTAAGCATTACAGGATTAATCACAGCACTCAGTTTGTCG
ACAACAAAGAGCGGCAAAATCACATCAATGGCATTGAGAATTTTTGGAACCAAGCGAAACGTCATATGCGTAAGTTTAACGGCATTCCTAAGGCTCATTT
TGAACTGTACCTGAAGGAGTGTGAGTGGCGATTTAACACACCAAGCGCCAAACAGCAATTAACTATGCTAAAACATATAGTTAAAGGTAAAATTTAAACC
TTATCTAGGACAGCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
657 bp | 218 aa | 41 | 697 | + | No |
Chemistry : DDE
ORF sequence :
MRKSRLSQYKQERLFELFIAGSTARIAAELVGVHRNTAAYYFHRLRVLIAEHVDNNSRFDGEIELDESYFGGHRKGQRGRGAAGKVPVFGLLKRGGKVYT
KVIPDAKSRTLLPIIESKIYPDSIVYTDNFASYDVLDVSNFKHYRINHSTQFVDNKERQNHINGIENFWNQAKRHMRKFNGIPKAHFELYLKECEWRFNT
PSAKQQLTMLKHIVKGKI
KVIPDAKSRTLLPIIESKIYPDSIVYTDNFASYDVLDVSNFKHYRINHSTQFVDNKERQNHINGIENFWNQAKRHMRKFNGIPKAHFELYLKECEWRFNT
PSAKQQLTMLKHIVKGKI
Blast result :
Comments
ISPsh1 is 82% aa similar to ISMha3.
References
1] ISfinder annotation (2017)
2] WTSI, Pathogen Informatics, Wellcome Trust Sanger Institute, CB10 1SA, United Kingdom (2016) Direct GenBank submission.
2] WTSI, Pathogen Informatics, Wellcome Trust Sanger Institute, CB10 1SA, United Kingdom (2016) Direct GenBank submission.