ISPsh1

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LT575468 ND Plesiomonas shigelloides
Plesiomonas shigelloides NCTC10360
DNA section
IS Length : 717 bp

Ends


IR Length : 17

IRL : GGGGCTGTCCTAGATAACTAAGATGATCTAGGATTGTTCCATGAGGAAAA
IRR : GGGGCTGTCCTAGATAAGGTTTAAATTTTACCTTTAACTATATGTTTTAG

Insertion site


Left flankDirect repeatRight flankDR Length
TAGGGGATGTCAAAAATATATTTTTCAT8

DNA sequence

GGGGCTGTCCTAGATAACTAAGATGATCTAGGATTGTTCCATGAGGAAAAGTAGGCTCAGCCAGTACAAACAGGAACGGTTATTTGAGCTATTTATTGCA
GGCTCCACTGCTCGTATTGCCGCAGAGCTGGTTGGAGTCCATAGGAACACTGCCGCTTACTATTTTCACCGGCTCAGAGTCCTGATAGCCGAGCACGTTG
ATAATAACTCTCGGTTTGATGGCGAGATTGAATTGGACGAAAGTTATTTCGGTGGTCATCGTAAAGGCCAGCGTGGCAGAGGTGCAGCTGGAAAAGTGCC
TGTTTTCGGGCTTCTCAAACGTGGTGGAAAGGTTTATACCAAGGTCATACCTGACGCTAAATCGCGGACATTACTGCCAATAATTGAGTCAAAAATTTAC
CCAGATAGCATCGTCTATACCGATAACTTTGCAAGTTACGATGTACTGGATGTGAGCAATTTTAAGCATTACAGGATTAATCACAGCACTCAGTTTGTCG
ACAACAAAGAGCGGCAAAATCACATCAATGGCATTGAGAATTTTTGGAACCAAGCGAAACGTCATATGCGTAAGTTTAACGGCATTCCTAAGGCTCATTT
TGAACTGTACCTGAAGGAGTGTGAGTGGCGATTTAACACACCAAGCGCCAAACAGCAATTAACTATGCTAAAACATATAGTTAAAGGTAAAATTTAAACC
TTATCTAGGACAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
657 bp218 aa41697+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRKSRLSQYKQERLFELFIAGSTARIAAELVGVHRNTAAYYFHRLRVLIAEHVDNNSRFDGEIELDESYFGGHRKGQRGRGAAGKVPVFGLLKRGGKVYT
KVIPDAKSRTLLPIIESKIYPDSIVYTDNFASYDVLDVSNFKHYRINHSTQFVDNKERQNHINGIENFWNQAKRHMRKFNGIPKAHFELYLKECEWRFNT
PSAKQQLTMLKHIVKGKI

 

Blast result :
Comments
ISPsh1 is 82% aa similar to ISMha3.
References
1] ISfinder annotation (2017)
2] WTSI, Pathogen Informatics, Wellcome Trust Sanger Institute, CB10 1SA, United Kingdom (2016) Direct GenBank submission.