ISPsy43
- Family IS66
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP012179 | ND | Pseudomonas syringae | Pseudomonas syringae pv. actinidiae |
DNA section
IS Length : 4875 bp
Ends
IR Length : 17
IRL : GTAACCGTCCGGGCAACACACCTTCCTGACACCGTCGCTTGAGGCGATGG
IRR : CGTAACCGTCCGGGCAACTCATCTAGCGTAGCTGGCTCTATTGTTTTACG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTCATAGCAA | GCTCTTCG | ACAAGCCAGT | 8 |
DNA sequence
GTAACCGTCCGGGCAACACACCTTCCTGACACCGTCGCTTGAGGCGATGGTGTCCACCCAAATATAGGTGGACACCATTTTTAGCCTTTTTAAGCGGACG
CCCATGCCACAAGAACGCCGTTCCTATTCCAAGTCCTTCAAGGCCCAGGTCATTGCTGAGTGCGCCCAACCTGACACTTCAATTGCCAATGTCGCCTTGA
CCCACAACCTCAATGCAAACCTCGTCCATAAATGGATTCGGGTGCATGCACAGAAAAACCTGACACTTCAAACCGCCTTCATCCCGGTCAAGACATCGCC
GCCGGTGCCGATGCATCAGGCCCTTCCTGCCACGATCCGAATCGAAGTGCCGCATTCAAAAGGCGTAGTCGTGGTGAGTTGGCCGGCAGAAAATGCAGCG
GCGTGTTCTGCTTTCCTGCGAGACCTGCTGCGATGATCCGCATCGACTCCATCTGGCTTGCCACCGAGCCCATGGACATGCGCGCAGGCACTGAAACTGC
GCTGGCGCGGGTCGTGGCGGTGTTCGGTGCGGCGAAGCCGCACTGTGCTTATCTGTTTGCCAACCGTCGTGCCAATCGCATGAAAGTGCTGGTGCATGAT
GGCTTGGGGATTTGGCTTGCTGCCCGGCGCTTGAATCAAGGACGTTTTTTTTGGCCGGGCGTGCGGCACGGCTCTGAAGTCGAGTTAGATGCAGAGCAAC
TTCAAGCCTTAGTGCTCGGTTTACCTTGGCAACGCGTCGGTTCCGGAGGAGCCATCACGGTGCTCTAACTCGTCTGCCATGGCGCCCTTGCCAGCGCAAT
TGGCCCATCAGTCTATCGCCGCCACTAGCCCTCTCTGGCAAAATCGGCGGCATGACTTCGCATCCGAATCTCGATCAATTAAACCCTGAAGAACTGCGTG
CCTTGGCGGCGCAGTTGATCCAGCGCGTCGAGACGATGGACAAGCAAATCACTCATCACAAGTCGGTCAACGAGAAACTGGCCCACGAGATCGCGCTGCT
CAAACGCTTCAAGTTTGCCAAGCGCAGCGAGCAGTTGAGCCCGGATCAAGCCAGCCTGCTCGACGACTTGATCGATACGGATATCGCCGCTATCGAAGCC
GAGCTTGAGGCGCTGCTACCGGCACCTGTCGAAGCCAAAGTGCGCCAGCAACCCAAGCGCGCACCGCTGCCACCGCAGTTTCCTCGCACACTGATCCATC
ACGAGCCTGACAATAGCCACTGCCAGTGCGGCTGCGCCCTCAAGCGCATCGGCGAAGATGCCAGCGAAAAGCTCGACTACACGCCCGGCGTGTTCACCGT
CGAGCGCCACATCCGTGGCAAGTGGGTCTGCGAACAGTGCGAAACGCTGATACAGGCGCCGGTACCGGCGCACGTCATCGATAAAGGCATCCCGACAGCG
GGCCTGCTGGCCCACATCATGGTGGCCAAGTTTGCCGACCATCTGCCGCTGTATCGCCAAGAGAAAATCTTCGGCCGCGCCGGGCTGCCCATCGCCCGTT
CGACCTTGGCGCAGTGGGTGGGCAACTGCGGCGTGCAATTACAGCCGCTGGTTGATGCGCTGCGCGAAGCCGTGCTGACGCACGACGTCGTTCACGCCGA
CGAGACGCCGGTACAAATGCTGACGCCTGGTGCGAAAAAAACTCATCGCGCTTACGTCTGGGCCTATGCCACCAGTCAGTTCTCCAACCTGGCGGCGGTC
GTTTACGACTTCAGCCCGAGCCGCGCTGGCGAACATGCCCGAGCCTTCTTGGGCAGTTGGAACGGCAAGCTGGTCTGCGATGACTTTGCCGGCTACAAGG
CAGGCTTTGAACTGGGCGTTACGGAGATCGGCTGCATGGCCCATGCCCGCCGGAAGTTCTTCGACTTGCACGCGACCAACAAGAGCCAGGTCGCCGAAAA
AGCGCTGAACTACATCGCGGCCTTGTACGAAGCTGAACGAGAAGTCCGAGAGCTGGAGCCGGGTGATCGGCAGCGAATACGGCAGGAAAAAGCAGCGCCA
ATCGCCGACGCACTTCATACCTGGATGATCGCCCAAAGACAGCTTGTGCCTGAGGGTTCGGCCATCGCCAAGGCGCTGGATTACAGTCTCAAACGCTGGA
TAGCGCTGACGCGCTATCTCGATGACGGTGCCGTGCCCATCGATAATAACTGGTGCGAGAATCAAATCCGGCCGTGGGCTCTTGGGCGTTCGAACTGGCT
GTTCGCGGGATCGTTACGCAGCGGTAAACGTGCAGCGGCGATCATGAGTTTGATCCAATCGGCGCGACTCAACGGCCATGATCCGTATGCTTATTTGAAG
GACGTACTCACGCGCCTGCCGACGCAGCGGGCAAGTGAGATTGCGGAGCTACTACCGCATAGGTGGCGACCGGTTTAGTTGCGCAAGACGGGATGCCCGG
ACGCACCTCCAACTGGTGCCATTACCGGTCTACTTAGCCTTTATGCTGGTTATCCATGCATTCCTCCCTACAGCTTCGCCCGGTTCAGCCGATAGTTTTC
GTACCAAGAGAAACGCGGCAATTCGATCCTGTAACAAAGGAGAGTAAGCGGCTTTTGAGGAAGATCTCTTGGAATGCTTTCATTACCTCATACCCATAAA
TGAGAGATGGGCACTTTTTAACGCCTAAGAAAGCACTCACAGACCTTGAGTGATCGAGAACCCGATGAATTTATTAGCGCCTGCCCTGTTCGTTACCAAC
CGTGTTCGATTCCCCATGAAATTCGCAATTTTGGGATTTATTGTCCTGATTCCTCTGCTCCTGCTAGGCACCCGGGCGATGCTTTCACTGAACACGAGCA
TCACGGGCATCAAGCATGAACAGGTGGGTCAACAATACTTGTTGGACGTCACCCCTATCCTGCGTCTAACCATGATTCAGAGGGCGCTGACACACGGCAT
GCTCAGCGGTGACACCAACGCAGTAGCCAATGCAGCACGCAATGCTGAAAAGCTTAACGATGCCTATGCGACTCTTGCTGCGCAGGACGCAAAATTTAGC
ACCCAACTGGCAACGACAGACCGAGTTCAGACGTTGCGTACCGCTAGTGTGCAGCTGGTTGAACGCGCCAAAGCAGGCGAAGCACCTTTGGTGATCTTTT
CCGCGTGGAACGACCAGTTAACCGACCTAATGAATTTCGTTTACTACATTACGGCCACTTCCGGCATGATTTTGGACGAAGATGCAGGTTCGTTGTACCT
CATCGATCTAAGCTCTATACGTCTGCCTCGGCAAATAAATCTGGTCGGACAGATTCGCGGTCTGGCCAGCGGTTTTAGCGCTGACCGTCCTCTGGACGAC
ACCACTCGTATTTTTGCCCAGACTTTGTTGAAACAGGAGCTGCTAATGCGTCAAGAGTTGCAGCAGAGCCTTTCCCTGCTTCGCCGAGAAGAGCCGAAAT
TATCTGGTGTAGTTCAGCCGTCTGTAACAACAGCCATTACCGACCTGGAAAATCTGCGTAAAGACCTGGTGGACTACCTTGATCCGAGCAAGCGCTCAAA
CGTGAATGCCAACACCTTGGGCGAGCGTGGAAACGCCGTCGTTGCTCAGTTTTACAAAGCTCAGGATCAGATGCAGGAATCGCTGCGAATTCGAATTGAT
GAGCGTCTGAATACACTGAGTAATGAGCGTACTTTCGGCACTGAGCTATTTATCGCCATTGCGATACTGCTGCTCTATGCGTTCGTCGGCATCTACAAGG
CTCTGCGGATTGGGGTTGATGAGCTCCTAGCTGTGACGGCACGTATTGCTCAAGGCGATCTGAGCGCGCGCGTCCGAATCAACAGCCACGATGAAATCGG
TGATGTAGGCGAGGGACTTAACCGCATGGTAACGGCCTTCTCTGGCTCACTGAGCCAGGTGGAGCGTAGCTCGCATTCAGTCTCAGATGCGGCAAAGCGA
CTAGAGATCTCCATAGGCCAAGCCAAAGCCTCAATGAACTCACAACAGGCTGAAACCGAGCAGGTTGCTACTGCCATCAACGAAATGACCGCGAGCGTTG
CCGACGTGGCCCAGAATACCGAGGGCGCAGCACGTGCCGCTGAATCTGCAAGCAGTGCGTCTAACGACGGCTTGAAAGTTATGATTGAAACAAGTGCCGC
TATTGAGGCGTTGGCCAACGAAGTGGAGCTCAGTGCAAGCAAAGTCGAAGCGTTAGCGACACACAGCAAAGAAATCGGTGGTGTCATCGAGGTCATCAGT
ACCATCGCGGATCAGACTAACCTGCTGGCCCTTAACGCGGCCATCGAGGCGGCGCGAGCTGGCGAGCAAGGCCGTGGTTTCGCGGTCGTGGCTGACGAAG
TGCGGACTCTGGCCTCGCGCACACAAAACTCCACAGAAGAAATTCGACGGATCATCCAACAGTTGCAAGGCGCTACTGATGCCGCTGTTCAACAGATGAA
AGCTGGGCAAACCCGAGCTAGGGAATGCATTCAGGCAGCGAGCCAAGCGTCTGGCAGCCTGAACCAGATCAATGAAGCAGTAGACGGAATTGTGGGCATG
AACACTCAGATTGCAAGTGCGGCGGTGCAGCAACATTCGGTCTCAGAGGATATCAATCGCAACGTCATCGGCATTCGAAACAGCAGCTTAATCGTCATGG
AAGGCGTAGAAGACAACGCCGTAACGGCTGACGAGCTTTCATTGCTCGCTAATGAACTTCGCAGCGTAGTCGGCAAGTTTAAGTTATCCAGCAACGCTTG
AAAGGAATCTCAAGCGTTTCAATTGTTGATAGCACGAGAAAGTGCTTTGATCGGGTCTGACTGGGGTGATGATGCCCGGCAGTCCCTGATCGACATTGAG
GGCTGAGCTTCATCGTTGCGCAATCTCGTAAAACAATAGAGCCAGCTACGCTAGATGAGTTGCCCGGACGGTTACG
CCCATGCCACAAGAACGCCGTTCCTATTCCAAGTCCTTCAAGGCCCAGGTCATTGCTGAGTGCGCCCAACCTGACACTTCAATTGCCAATGTCGCCTTGA
CCCACAACCTCAATGCAAACCTCGTCCATAAATGGATTCGGGTGCATGCACAGAAAAACCTGACACTTCAAACCGCCTTCATCCCGGTCAAGACATCGCC
GCCGGTGCCGATGCATCAGGCCCTTCCTGCCACGATCCGAATCGAAGTGCCGCATTCAAAAGGCGTAGTCGTGGTGAGTTGGCCGGCAGAAAATGCAGCG
GCGTGTTCTGCTTTCCTGCGAGACCTGCTGCGATGATCCGCATCGACTCCATCTGGCTTGCCACCGAGCCCATGGACATGCGCGCAGGCACTGAAACTGC
GCTGGCGCGGGTCGTGGCGGTGTTCGGTGCGGCGAAGCCGCACTGTGCTTATCTGTTTGCCAACCGTCGTGCCAATCGCATGAAAGTGCTGGTGCATGAT
GGCTTGGGGATTTGGCTTGCTGCCCGGCGCTTGAATCAAGGACGTTTTTTTTGGCCGGGCGTGCGGCACGGCTCTGAAGTCGAGTTAGATGCAGAGCAAC
TTCAAGCCTTAGTGCTCGGTTTACCTTGGCAACGCGTCGGTTCCGGAGGAGCCATCACGGTGCTCTAACTCGTCTGCCATGGCGCCCTTGCCAGCGCAAT
TGGCCCATCAGTCTATCGCCGCCACTAGCCCTCTCTGGCAAAATCGGCGGCATGACTTCGCATCCGAATCTCGATCAATTAAACCCTGAAGAACTGCGTG
CCTTGGCGGCGCAGTTGATCCAGCGCGTCGAGACGATGGACAAGCAAATCACTCATCACAAGTCGGTCAACGAGAAACTGGCCCACGAGATCGCGCTGCT
CAAACGCTTCAAGTTTGCCAAGCGCAGCGAGCAGTTGAGCCCGGATCAAGCCAGCCTGCTCGACGACTTGATCGATACGGATATCGCCGCTATCGAAGCC
GAGCTTGAGGCGCTGCTACCGGCACCTGTCGAAGCCAAAGTGCGCCAGCAACCCAAGCGCGCACCGCTGCCACCGCAGTTTCCTCGCACACTGATCCATC
ACGAGCCTGACAATAGCCACTGCCAGTGCGGCTGCGCCCTCAAGCGCATCGGCGAAGATGCCAGCGAAAAGCTCGACTACACGCCCGGCGTGTTCACCGT
CGAGCGCCACATCCGTGGCAAGTGGGTCTGCGAACAGTGCGAAACGCTGATACAGGCGCCGGTACCGGCGCACGTCATCGATAAAGGCATCCCGACAGCG
GGCCTGCTGGCCCACATCATGGTGGCCAAGTTTGCCGACCATCTGCCGCTGTATCGCCAAGAGAAAATCTTCGGCCGCGCCGGGCTGCCCATCGCCCGTT
CGACCTTGGCGCAGTGGGTGGGCAACTGCGGCGTGCAATTACAGCCGCTGGTTGATGCGCTGCGCGAAGCCGTGCTGACGCACGACGTCGTTCACGCCGA
CGAGACGCCGGTACAAATGCTGACGCCTGGTGCGAAAAAAACTCATCGCGCTTACGTCTGGGCCTATGCCACCAGTCAGTTCTCCAACCTGGCGGCGGTC
GTTTACGACTTCAGCCCGAGCCGCGCTGGCGAACATGCCCGAGCCTTCTTGGGCAGTTGGAACGGCAAGCTGGTCTGCGATGACTTTGCCGGCTACAAGG
CAGGCTTTGAACTGGGCGTTACGGAGATCGGCTGCATGGCCCATGCCCGCCGGAAGTTCTTCGACTTGCACGCGACCAACAAGAGCCAGGTCGCCGAAAA
AGCGCTGAACTACATCGCGGCCTTGTACGAAGCTGAACGAGAAGTCCGAGAGCTGGAGCCGGGTGATCGGCAGCGAATACGGCAGGAAAAAGCAGCGCCA
ATCGCCGACGCACTTCATACCTGGATGATCGCCCAAAGACAGCTTGTGCCTGAGGGTTCGGCCATCGCCAAGGCGCTGGATTACAGTCTCAAACGCTGGA
TAGCGCTGACGCGCTATCTCGATGACGGTGCCGTGCCCATCGATAATAACTGGTGCGAGAATCAAATCCGGCCGTGGGCTCTTGGGCGTTCGAACTGGCT
GTTCGCGGGATCGTTACGCAGCGGTAAACGTGCAGCGGCGATCATGAGTTTGATCCAATCGGCGCGACTCAACGGCCATGATCCGTATGCTTATTTGAAG
GACGTACTCACGCGCCTGCCGACGCAGCGGGCAAGTGAGATTGCGGAGCTACTACCGCATAGGTGGCGACCGGTTTAGTTGCGCAAGACGGGATGCCCGG
ACGCACCTCCAACTGGTGCCATTACCGGTCTACTTAGCCTTTATGCTGGTTATCCATGCATTCCTCCCTACAGCTTCGCCCGGTTCAGCCGATAGTTTTC
GTACCAAGAGAAACGCGGCAATTCGATCCTGTAACAAAGGAGAGTAAGCGGCTTTTGAGGAAGATCTCTTGGAATGCTTTCATTACCTCATACCCATAAA
TGAGAGATGGGCACTTTTTAACGCCTAAGAAAGCACTCACAGACCTTGAGTGATCGAGAACCCGATGAATTTATTAGCGCCTGCCCTGTTCGTTACCAAC
CGTGTTCGATTCCCCATGAAATTCGCAATTTTGGGATTTATTGTCCTGATTCCTCTGCTCCTGCTAGGCACCCGGGCGATGCTTTCACTGAACACGAGCA
TCACGGGCATCAAGCATGAACAGGTGGGTCAACAATACTTGTTGGACGTCACCCCTATCCTGCGTCTAACCATGATTCAGAGGGCGCTGACACACGGCAT
GCTCAGCGGTGACACCAACGCAGTAGCCAATGCAGCACGCAATGCTGAAAAGCTTAACGATGCCTATGCGACTCTTGCTGCGCAGGACGCAAAATTTAGC
ACCCAACTGGCAACGACAGACCGAGTTCAGACGTTGCGTACCGCTAGTGTGCAGCTGGTTGAACGCGCCAAAGCAGGCGAAGCACCTTTGGTGATCTTTT
CCGCGTGGAACGACCAGTTAACCGACCTAATGAATTTCGTTTACTACATTACGGCCACTTCCGGCATGATTTTGGACGAAGATGCAGGTTCGTTGTACCT
CATCGATCTAAGCTCTATACGTCTGCCTCGGCAAATAAATCTGGTCGGACAGATTCGCGGTCTGGCCAGCGGTTTTAGCGCTGACCGTCCTCTGGACGAC
ACCACTCGTATTTTTGCCCAGACTTTGTTGAAACAGGAGCTGCTAATGCGTCAAGAGTTGCAGCAGAGCCTTTCCCTGCTTCGCCGAGAAGAGCCGAAAT
TATCTGGTGTAGTTCAGCCGTCTGTAACAACAGCCATTACCGACCTGGAAAATCTGCGTAAAGACCTGGTGGACTACCTTGATCCGAGCAAGCGCTCAAA
CGTGAATGCCAACACCTTGGGCGAGCGTGGAAACGCCGTCGTTGCTCAGTTTTACAAAGCTCAGGATCAGATGCAGGAATCGCTGCGAATTCGAATTGAT
GAGCGTCTGAATACACTGAGTAATGAGCGTACTTTCGGCACTGAGCTATTTATCGCCATTGCGATACTGCTGCTCTATGCGTTCGTCGGCATCTACAAGG
CTCTGCGGATTGGGGTTGATGAGCTCCTAGCTGTGACGGCACGTATTGCTCAAGGCGATCTGAGCGCGCGCGTCCGAATCAACAGCCACGATGAAATCGG
TGATGTAGGCGAGGGACTTAACCGCATGGTAACGGCCTTCTCTGGCTCACTGAGCCAGGTGGAGCGTAGCTCGCATTCAGTCTCAGATGCGGCAAAGCGA
CTAGAGATCTCCATAGGCCAAGCCAAAGCCTCAATGAACTCACAACAGGCTGAAACCGAGCAGGTTGCTACTGCCATCAACGAAATGACCGCGAGCGTTG
CCGACGTGGCCCAGAATACCGAGGGCGCAGCACGTGCCGCTGAATCTGCAAGCAGTGCGTCTAACGACGGCTTGAAAGTTATGATTGAAACAAGTGCCGC
TATTGAGGCGTTGGCCAACGAAGTGGAGCTCAGTGCAAGCAAAGTCGAAGCGTTAGCGACACACAGCAAAGAAATCGGTGGTGTCATCGAGGTCATCAGT
ACCATCGCGGATCAGACTAACCTGCTGGCCCTTAACGCGGCCATCGAGGCGGCGCGAGCTGGCGAGCAAGGCCGTGGTTTCGCGGTCGTGGCTGACGAAG
TGCGGACTCTGGCCTCGCGCACACAAAACTCCACAGAAGAAATTCGACGGATCATCCAACAGTTGCAAGGCGCTACTGATGCCGCTGTTCAACAGATGAA
AGCTGGGCAAACCCGAGCTAGGGAATGCATTCAGGCAGCGAGCCAAGCGTCTGGCAGCCTGAACCAGATCAATGAAGCAGTAGACGGAATTGTGGGCATG
AACACTCAGATTGCAAGTGCGGCGGTGCAGCAACATTCGGTCTCAGAGGATATCAATCGCAACGTCATCGGCATTCGAAACAGCAGCTTAATCGTCATGG
AAGGCGTAGAAGACAACGCCGTAACGGCTGACGAGCTTTCATTGCTCGCTAATGAACTTCGCAGCGTAGTCGGCAAGTTTAAGTTATCCAGCAACGCTTG
AAAGGAATCTCAAGCGTTTCAATTGTTGATAGCACGAGAAAGTGCTTTGATCGGGTCTGACTGGGGTGATGATGCCCGGCAGTCCCTGATCGACATTGAG
GGCTGAGCTTCATCGTTGCGCAATCTCGTAAAACAATAGAGCCAGCTACGCTAGATGAGTTGCCCGGACGGTTACG
Protein section
ORF number : 3
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 537 bp | 178 aa | 232 | 768 | + | No |
AG : IS66 TnpB
ORF sequence :
MDSGACTEKPDTSNRLHPGQDIAAGADASGPSCHDPNRSAAFKRRSRGELAGRKCSGVFCFPARPAAMIRIDSIWLATEPMDMRAGTETALARVVAVFGA
AKPHCAYLFANRRANRMKVLVHDGLGIWLAARRLNQGRFFWPGVRHGSEVELDAEQLQALVLGLPWQRVGSGGAITVL
AKPHCAYLFANRRANRMKVLVHDGLGIWLAARRLNQGRFFWPGVRHGSEVELDAEQLQALVLGLPWQRVGSGGAITVL
Blast result :ORF 2
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1527 bp | 508 aa | 852 | 2378 | + | No |
Chemistry : DDE
ORF sequence :
MTSHPNLDQLNPEELRALAAQLIQRVETMDKQITHHKSVNEKLAHEIALLKRFKFAKRSEQLSPDQASLLDDLIDTDIAAIEAELEALLPAPVEAKVRQQ
PKRAPLPPQFPRTLIHHEPDNSHCQCGCALKRIGEDASEKLDYTPGVFTVERHIRGKWVCEQCETLIQAPVPAHVIDKGIPTAGLLAHIMVAKFADHLPL
YRQEKIFGRAGLPIARSTLAQWVGNCGVQLQPLVDALREAVLTHDVVHADETPVQMLTPGAKKTHRAYVWAYATSQFSNLAAVVYDFSPSRAGEHARAFL
GSWNGKLVCDDFAGYKAGFELGVTEIGCMAHARRKFFDLHATNKSQVAEKALNYIAALYEAEREVRELEPGDRQRIRQEKAAPIADALHTWMIAQRQLVP
EGSAIAKALDYSLKRWIALTRYLDDGAVPIDNNWCENQIRPWALGRSNWLFAGSLRSGKRAAAIMSLIQSARLNGHDPYAYLKDVLTRLPTQRASEIAEL
LPHRWRPV
PKRAPLPPQFPRTLIHHEPDNSHCQCGCALKRIGEDASEKLDYTPGVFTVERHIRGKWVCEQCETLIQAPVPAHVIDKGIPTAGLLAHIMVAKFADHLPL
YRQEKIFGRAGLPIARSTLAQWVGNCGVQLQPLVDALREAVLTHDVVHADETPVQMLTPGAKKTHRAYVWAYATSQFSNLAAVVYDFSPSRAGEHARAFL
GSWNGKLVCDDFAGYKAGFELGVTEIGCMAHARRKFFDLHATNKSQVAEKALNYIAALYEAEREVRELEPGDRQRIRQEKAAPIADALHTWMIAQRQLVP
EGSAIAKALDYSLKRWIALTRYLDDGAVPIDNNWCENQIRPWALGRSNWLFAGSLRSGKRAAAIMSLIQSARLNGHDPYAYLKDVLTRLPTQRASEIAEL
LPHRWRPV
Blast result :ORF 3
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 2034 bp | 678 aa | 2665 | 4698 | + | No |
Annotation : methyl-accepting chemotaxis proteinDescription :
ORF sequence :
MNLLAPALFVTNRVRFPMKFAILGFIVLIPLLLLGTRAMLSLNTSITGIKHEQVGQQYLLDVTPILRLTMIQRALTHGMLSGDTNAVANAARNAEKLNDA
YATLAAQDAKFSTQLATTDRVQTLRTASVQLVERAKAGEAPLVIFSAWNDQLTDLMNFVYYITATSGMILDEDAGSLYLIDLSSIRLPRQINLVGQIRGL
ASGFSADRPLDDTTRIFAQTLLKQELLMRQELQQSLSLLRREEPKLSGVVQPSVTTAITDLENLRKDLVDYLDPSKRSNVNANTLGERGNAVVAQFYKAQ
DQMQESLRIRIDERLNTLSNERTFGTELFIAIAILLLYAFVGIYKALRIGVDELLAVTARIAQGDLSARVRINSHDEIGDVGEGLNRMVTAFSGSLSQVE
RSSHSVSDAAKRLEISIGQAKASMNSQQAETEQVATAINEMTASVADVAQNTEGAARAAESASSASNDGLKVMIETSAAIEALANEVELSASKVEALATH
SKEIGGVIEVISTIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQNSTEEIRRIIQQLQGATDAAVQQMKAGQTRARECIQAASQASGSLN
QINEAVDGIVGMNTQIASAAVQQHSVSEDINRNVIGIRNSSLIVMEGVEDNAVTADELSLLANELRSVVGKFKLSSNA
YATLAAQDAKFSTQLATTDRVQTLRTASVQLVERAKAGEAPLVIFSAWNDQLTDLMNFVYYITATSGMILDEDAGSLYLIDLSSIRLPRQINLVGQIRGL
ASGFSADRPLDDTTRIFAQTLLKQELLMRQELQQSLSLLRREEPKLSGVVQPSVTTAITDLENLRKDLVDYLDPSKRSNVNANTLGERGNAVVAQFYKAQ
DQMQESLRIRIDERLNTLSNERTFGTELFIAIAILLLYAFVGIYKALRIGVDELLAVTARIAQGDLSARVRINSHDEIGDVGEGLNRMVTAFSGSLSQVE
RSSHSVSDAAKRLEISIGQAKASMNSQQAETEQVATAINEMTASVADVAQNTEGAARAAESASSASNDGLKVMIETSAAIEALANEVELSASKVEALATH
SKEIGGVIEVISTIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQNSTEEIRRIIQQLQGATDAAVQQMKAGQTRARECIQAASQASGSLN
QINEAVDGIVGMNTQIASAAVQQHSVSEDINRNVIGIRNSSLIVMEGVEDNAVTADELSLLANELRSVVGKFKLSSNA
Blast result :
Comments
ISPsy43 is also known as Tn6211.
ISPsy43 is 95% (orfA) and 88% (orfB, the transposase) aa similar to ISPpu19
ISPsy43 is 95% (orfA) and 88% (orfB, the transposase) aa similar to ISPpu19
References
1] Butler M. (2017) Direct submission to ISfinder
2] Butler et al., 2013, PLoS ONE, 8(2): e57464, Epub 2013 Feb 27
2] Butler et al., 2013, PLoS ONE, 8(2): e57464, Epub 2013 Feb 27