ISGasp1
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JPXY01000048 | ND | Gallibacterium sp. | Gallibacterium sp. CCM5976 Gallibacterium genomosp. 2 CCM5976 |
DNA section
IS Length : 720 bp
Ends
IR Length : 26/30
IRL : GGGGCTGTACTAGATAACTAGGGAAATCTAATTTCAGGTTAGAATAATCC
IRR : GGGGCTGTCCTAGATAACTAGAACAAATCTTTCTTTACTAATTGTTTTAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTTACTTGA | TAACATTT | TTTTACACAC | 8 |
DNA sequence
GGGGCTGTACTAGATAACTAGGGAAATCTAATTTCAGGTTAGAATAATCCCGATGAGAAAAAGTCGTTTAAGCCGGTACAAGCAAAACAAACTGATTGAA
CTGTTTATTGCGGGTGTTACCGCACGCACAGCAGCTCAATTAGTCGGCGTCAATAAAAACACCGCAGCCTATTACTTTCACCGTTTACGCTTACTGATTT
TCCATAACAGCCCGCATCTGGAAATGTTTGATGGTGAAGTAGAAGTGGATGAAAGCTATTTTGGCGGACAGCGCAAAGGCAAACGCGGTCGCGGTGCGGC
CGGTAAAGTGGCTGTATTCGGGCTTTTAAAGCGAAATGGTAAAGTTTACACCGTTGCTGTACCCAATACGCAAACTACCACTTTATTACCGATAATCCGT
GAGCAAGTGAAACCTGACAGCATTGTTTATACCGATTGTTACAAAAGCTATGACGTACTTGATGTGAGCGAATTTAGTCACTTTCGCATCAATCACAGCA
CACATTTTGCTGAACGACAAAATCACATCAACGGAATTGAGAACTTTTGGAACCAAGCAAAACGCCATTTGCGTAAGTTCAACGGCATTGCCAAAGAGCA
TTTTGAGCTGTATTTGAAGGAATGCGAATGGCGTTTTAACCACAGTGAAATAAAGTCCAAAATTTCCATTTTAAAACAATTAGTAAAGAAAGATTTGTTC
TAGTTATCTAGGACAGCCCC
CTGTTTATTGCGGGTGTTACCGCACGCACAGCAGCTCAATTAGTCGGCGTCAATAAAAACACCGCAGCCTATTACTTTCACCGTTTACGCTTACTGATTT
TCCATAACAGCCCGCATCTGGAAATGTTTGATGGTGAAGTAGAAGTGGATGAAAGCTATTTTGGCGGACAGCGCAAAGGCAAACGCGGTCGCGGTGCGGC
CGGTAAAGTGGCTGTATTCGGGCTTTTAAAGCGAAATGGTAAAGTTTACACCGTTGCTGTACCCAATACGCAAACTACCACTTTATTACCGATAATCCGT
GAGCAAGTGAAACCTGACAGCATTGTTTATACCGATTGTTACAAAAGCTATGACGTACTTGATGTGAGCGAATTTAGTCACTTTCGCATCAATCACAGCA
CACATTTTGCTGAACGACAAAATCACATCAACGGAATTGAGAACTTTTGGAACCAAGCAAAACGCCATTTGCGTAAGTTCAACGGCATTGCCAAAGAGCA
TTTTGAGCTGTATTTGAAGGAATGCGAATGGCGTTTTAACCACAGTGAAATAAAGTCCAAAATTTCCATTTTAAAACAATTAGTAAAGAAAGATTTGTTC
TAGTTATCTAGGACAGCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
651 bp | 216 aa | 53 | 703 | + | No |
Chemistry : DDE
ORF sequence :
MRKSRLSRYKQNKLIELFIAGVTARTAAQLVGVNKNTAAYYFHRLRLLIFHNSPHLEMFDGEVEVDESYFGGQRKGKRGRGAAGKVAVFGLLKRNGKVYT
VAVPNTQTTTLLPIIREQVKPDSIVYTDCYKSYDVLDVSEFSHFRINHSTHFAERQNHINGIENFWNQAKRHLRKFNGIAKEHFELYLKECEWRFNHSEI
KSKISILKQLVKKDLF
VAVPNTQTTTLLPIIREQVKPDSIVYTDCYKSYDVLDVSEFSHFRINHSTHFAERQNHINGIENFWNQAKRHLRKFNGIAKEHFELYLKECEWRFNHSEI
KSKISILKQLVKKDLF
Blast result :
Comments
ISGasp1 is 93% aa similar to ISHpa1.
References
1] ISfinder annotation (2017)
2] Kudirkiene,E., Bager,R.J., Johnson,T.J. and Bojesen,A.M. (2014) Direct GenBank submission.
2] Kudirkiene,E., Bager,R.J., Johnson,T.J. and Bojesen,A.M. (2014) Direct GenBank submission.