ISGasp1

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JPXY01000048 ND Gallibacterium sp.
Gallibacterium sp. CCM5976
Gallibacterium genomosp. 2 CCM5976
DNA section
IS Length : 720 bp

Ends


IR Length : 26/30

IRL : GGGGCTGTACTAGATAACTAGGGAAATCTAATTTCAGGTTAGAATAATCC
IRR : GGGGCTGTCCTAGATAACTAGAACAAATCTTTCTTTACTAATTGTTTTAA

Insertion site


Left flankDirect repeatRight flankDR Length
TTTTACTTGATAACATTTTTTTACACAC8

DNA sequence

GGGGCTGTACTAGATAACTAGGGAAATCTAATTTCAGGTTAGAATAATCCCGATGAGAAAAAGTCGTTTAAGCCGGTACAAGCAAAACAAACTGATTGAA
CTGTTTATTGCGGGTGTTACCGCACGCACAGCAGCTCAATTAGTCGGCGTCAATAAAAACACCGCAGCCTATTACTTTCACCGTTTACGCTTACTGATTT
TCCATAACAGCCCGCATCTGGAAATGTTTGATGGTGAAGTAGAAGTGGATGAAAGCTATTTTGGCGGACAGCGCAAAGGCAAACGCGGTCGCGGTGCGGC
CGGTAAAGTGGCTGTATTCGGGCTTTTAAAGCGAAATGGTAAAGTTTACACCGTTGCTGTACCCAATACGCAAACTACCACTTTATTACCGATAATCCGT
GAGCAAGTGAAACCTGACAGCATTGTTTATACCGATTGTTACAAAAGCTATGACGTACTTGATGTGAGCGAATTTAGTCACTTTCGCATCAATCACAGCA
CACATTTTGCTGAACGACAAAATCACATCAACGGAATTGAGAACTTTTGGAACCAAGCAAAACGCCATTTGCGTAAGTTCAACGGCATTGCCAAAGAGCA
TTTTGAGCTGTATTTGAAGGAATGCGAATGGCGTTTTAACCACAGTGAAATAAAGTCCAAAATTTCCATTTTAAAACAATTAGTAAAGAAAGATTTGTTC
TAGTTATCTAGGACAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
651 bp216 aa53703+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRKSRLSRYKQNKLIELFIAGVTARTAAQLVGVNKNTAAYYFHRLRLLIFHNSPHLEMFDGEVEVDESYFGGQRKGKRGRGAAGKVAVFGLLKRNGKVYT
VAVPNTQTTTLLPIIREQVKPDSIVYTDCYKSYDVLDVSEFSHFRINHSTHFAERQNHINGIENFWNQAKRHLRKFNGIAKEHFELYLKECEWRFNHSEI
KSKISILKQLVKKDLF

 

Blast result :
Comments
ISGasp1 is 93% aa similar to ISHpa1.
References
1] ISfinder annotation (2017)
2] Kudirkiene,E., Bager,R.J., Johnson,T.J. and Bojesen,A.M. (2014) Direct GenBank submission.