ISGoba1
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LCFB01000019 | ND | Gottesmanbacteria bacterium | Gottesmanbacteria bacterium Candidatus Gottesmanbacteria bacterium GW2011_GWA1_43_11 UV59_C0019 |
DNA section
IS Length : 732 bp
Ends
IR Length : 17
IRL : GGGTCTAGATAACTTTAGCAGTCAATAGTTGCTAAGATGGGTTATCTAGA
IRR : GGGTCTAGATAACTTTACAAAGGATTTTTCCTAAAGCTCTTTAACAAATC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGAAACGATAA | TTTGCAA | ATAGGAAGCC | 7 |
DNA sequence
GGGTCTAGATAACTTTAGCAGTCAATAGTTGCTAAGATGGGTTATCTAGACAATGAAAAATAAATATTATCATAAGTCACATATTTCGGAGAGAACATTT
CGAAAAATCCTTCGATGCTTCTCGTCTGATTTTGATGCGACACAAACAAGCATAGTTAGTGGTATATCAAGAACTACCCTCAATCACTTGTTTGCCTTGT
TTCGTAAACGAATTGTATCACTTACGACACAACGTAAGAAAGTGAATGGTACAGTTGAAATTGACGAATCATATTTTGGAGCCAGACGAGTGAGAGGAAA
ACGCGGGAGAGGAGCAACTGGCGAAGTTCCTGTTCTTGGTATTCTTAAACGAAACGGTAAAGTATTAGTAACTATTATTGAAAACTGTTCTCGATCTGAG
CTCATGCCCATCATTAAAGGTAAAGTGTTAGCCAAGGCGCATGTATATACTGATGGATGGCGAGCATATGATGGATTAATTACGTTAGGATACAAACACT
ATCGTATTCACCATCAAGAGAACGAGTTTGCCAGAGGTAAAAACCATGTAAACGGTATTGAAAGTTTCTGGCCATTTACCAAACGAAGACTTATGAAATT
TAACGGCATTCATAAATCAAAGTTTCTGTTACACTTAAAAGAATCAGAATACCGATGGAACACACGAGAAAATATGTATATCGATTTGTTAAAGAGCTTT
AGGAAAAATCCTTTGTAAAGTTATCTAGACCC
CGAAAAATCCTTCGATGCTTCTCGTCTGATTTTGATGCGACACAAACAAGCATAGTTAGTGGTATATCAAGAACTACCCTCAATCACTTGTTTGCCTTGT
TTCGTAAACGAATTGTATCACTTACGACACAACGTAAGAAAGTGAATGGTACAGTTGAAATTGACGAATCATATTTTGGAGCCAGACGAGTGAGAGGAAA
ACGCGGGAGAGGAGCAACTGGCGAAGTTCCTGTTCTTGGTATTCTTAAACGAAACGGTAAAGTATTAGTAACTATTATTGAAAACTGTTCTCGATCTGAG
CTCATGCCCATCATTAAAGGTAAAGTGTTAGCCAAGGCGCATGTATATACTGATGGATGGCGAGCATATGATGGATTAATTACGTTAGGATACAAACACT
ATCGTATTCACCATCAAGAGAACGAGTTTGCCAGAGGTAAAAACCATGTAAACGGTATTGAAAGTTTCTGGCCATTTACCAAACGAAGACTTATGAAATT
TAACGGCATTCATAAATCAAAGTTTCTGTTACACTTAAAAGAATCAGAATACCGATGGAACACACGAGAAAATATGTATATCGATTTGTTAAAGAGCTTT
AGGAAAAATCCTTTGTAAAGTTATCTAGACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
666 bp | 221 aa | 53 | 718 | + | No |
Chemistry : DDE
ORF sequence :
MKNKYYHKSHISERTFRKILRCFSSDFDATQTSIVSGISRTTLNHLFALFRKRIVSLTTQRKKVNGTVEIDESYFGARRVRGKRGRGATGEVPVLGILKR
NGKVLVTIIENCSRSELMPIIKGKVLAKAHVYTDGWRAYDGLITLGYKHYRIHHQENEFARGKNHVNGIESFWPFTKRRLMKFNGIHKSKFLLHLKESEY
RWNTRENMYIDLLKSFRKNPL
NGKVLVTIIENCSRSELMPIIKGKVLAKAHVYTDGWRAYDGLITLGYKHYRIHHQENEFARGKNHVNGIESFWPFTKRRLMKFNGIHKSKFLLHLKESEY
RWNTRENMYIDLLKSFRKNPL
Blast result :
Comments
ISGoba1 is 72% aa similar to ISFtu7.
References
1] ISfinder annotation (2017)
2] Brown,C.T., Hug,L.A., Thomas,B.C., Sharon,I., Castelle,C.J., Singh,A., Wilkins,M.J., Williams,K.H. and Banfield,J.F. (2015) Nature.
2] Brown,C.T., Hug,L.A., Thomas,B.C., Sharon,I., Castelle,C.J., Singh,A., Wilkins,M.J., Williams,K.H. and Banfield,J.F. (2015) Nature.