ISGoba1

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LCFB01000019 ND Gottesmanbacteria bacterium
Gottesmanbacteria bacterium
Candidatus Gottesmanbacteria bacterium GW2011_GWA1_43_11 UV59_C0019
DNA section
IS Length : 732 bp

Ends


IR Length : 17

IRL : GGGTCTAGATAACTTTAGCAGTCAATAGTTGCTAAGATGGGTTATCTAGA
IRR : GGGTCTAGATAACTTTACAAAGGATTTTTCCTAAAGCTCTTTAACAAATC

Insertion site


Left flankDirect repeatRight flankDR Length
TGAAACGATAATTTGCAAATAGGAAGCC7

DNA sequence

GGGTCTAGATAACTTTAGCAGTCAATAGTTGCTAAGATGGGTTATCTAGACAATGAAAAATAAATATTATCATAAGTCACATATTTCGGAGAGAACATTT
CGAAAAATCCTTCGATGCTTCTCGTCTGATTTTGATGCGACACAAACAAGCATAGTTAGTGGTATATCAAGAACTACCCTCAATCACTTGTTTGCCTTGT
TTCGTAAACGAATTGTATCACTTACGACACAACGTAAGAAAGTGAATGGTACAGTTGAAATTGACGAATCATATTTTGGAGCCAGACGAGTGAGAGGAAA
ACGCGGGAGAGGAGCAACTGGCGAAGTTCCTGTTCTTGGTATTCTTAAACGAAACGGTAAAGTATTAGTAACTATTATTGAAAACTGTTCTCGATCTGAG
CTCATGCCCATCATTAAAGGTAAAGTGTTAGCCAAGGCGCATGTATATACTGATGGATGGCGAGCATATGATGGATTAATTACGTTAGGATACAAACACT
ATCGTATTCACCATCAAGAGAACGAGTTTGCCAGAGGTAAAAACCATGTAAACGGTATTGAAAGTTTCTGGCCATTTACCAAACGAAGACTTATGAAATT
TAACGGCATTCATAAATCAAAGTTTCTGTTACACTTAAAAGAATCAGAATACCGATGGAACACACGAGAAAATATGTATATCGATTTGTTAAAGAGCTTT
AGGAAAAATCCTTTGTAAAGTTATCTAGACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
666 bp221 aa53718+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKNKYYHKSHISERTFRKILRCFSSDFDATQTSIVSGISRTTLNHLFALFRKRIVSLTTQRKKVNGTVEIDESYFGARRVRGKRGRGATGEVPVLGILKR
NGKVLVTIIENCSRSELMPIIKGKVLAKAHVYTDGWRAYDGLITLGYKHYRIHHQENEFARGKNHVNGIESFWPFTKRRLMKFNGIHKSKFLLHLKESEY
RWNTRENMYIDLLKSFRKNPL

 

Blast result :
Comments
ISGoba1 is 72% aa similar to ISFtu7.
References
1] ISfinder annotation (2017)
2] Brown,C.T., Hug,L.A., Thomas,B.C., Sharon,I., Castelle,C.J., Singh,A., Wilkins,M.J., Williams,K.H. and Banfield,J.F. (2015) Nature.