ISCagr1
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ACYG01000032 | ND | Campylobacter gracilis | Campylobacter gracilis RM3268 |
DNA section
IS Length : 746 bp
Ends
IR Length : 17/19
IRL : GGCTCTCTTTAACTTAAGCTCACGCAAGGGAGTAGCAAGATATGATGAGA
IRR : GGCTCAATTAAACTTAAGCGGATTTTCTCTTATCAATTTCAACAGTTTCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAGCAAGCGTTTTTAAATT | TATCAAAAACCTTGA | 0 |
DNA sequence
GGCTCTCTTTAACTTAAGCTCACGCAAGGGAGTAGCAAGATATGATGAGAAGCATGAAAAACAAGTATATCTATCGTTCCCGAATTTCGCAGAAGAAATT
TAGAGAAATTTTAAAGTATTTTGCAGAGGATATAGAGGCTACTAAAATAGCAAATTTAACCGGGATTTCTAGAATTTCCATTAATAAGATTCTAAAAAGC
ATTAGAGTTTTGATCTCTCAAGAATGTGAAAATATAAGCAAATTTAGCGGTGAAATAGAGATTGACGAAAGTTACTTCGGAGCTAAAAGAGTAAGAGGTA
AAAGAGGCAGAGGAGCAAGCGGAAAGCAGCCGGTATTTGGAATGCTTAAAAGAGACGGCAAAGTTTATACCCAGATAGTTAAAAACTGCTCTGCAAATGA
ACTGATACCGATACTATCGCAATTTAGCGAGCTTGATAGCTCTACTATCTATTCAGATTGCTGGAAAGCTTATGACGGATTGGTAGATTACGGAGCTAAA
GCTCACTATAGAGTAAAACATTCAAAGAATGAATTTGCTAATGGTAAAAATCATATAAACGGTATAGAAAACTTCTGGGGCTATGCTAAACATAGATTAT
CTAAATTTAAAGGTATTAAGAAAGAGAACTTCTTGCTTCATCTTAAAGAATGTGAATTTAGATATAATACTAAAACTATACAGGAAAACTTATATCAGAA
ACTGTTGAAATTGATAAGAGAAAATCCGCTTAAGTTTAATTGAGCC
TAGAGAAATTTTAAAGTATTTTGCAGAGGATATAGAGGCTACTAAAATAGCAAATTTAACCGGGATTTCTAGAATTTCCATTAATAAGATTCTAAAAAGC
ATTAGAGTTTTGATCTCTCAAGAATGTGAAAATATAAGCAAATTTAGCGGTGAAATAGAGATTGACGAAAGTTACTTCGGAGCTAAAAGAGTAAGAGGTA
AAAGAGGCAGAGGAGCAAGCGGAAAGCAGCCGGTATTTGGAATGCTTAAAAGAGACGGCAAAGTTTATACCCAGATAGTTAAAAACTGCTCTGCAAATGA
ACTGATACCGATACTATCGCAATTTAGCGAGCTTGATAGCTCTACTATCTATTCAGATTGCTGGAAAGCTTATGACGGATTGGTAGATTACGGAGCTAAA
GCTCACTATAGAGTAAAACATTCAAAGAATGAATTTGCTAATGGTAAAAATCATATAAACGGTATAGAAAACTTCTGGGGCTATGCTAAACATAGATTAT
CTAAATTTAAAGGTATTAAGAAAGAGAACTTCTTGCTTCATCTTAAAGAATGTGAATTTAGATATAATACTAAAACTATACAGGAAAACTTATATCAGAA
ACTGTTGAAATTGATAAGAGAAAATCCGCTTAAGTTTAATTGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
702 bp | 233 aa | 42 | 743 | + | No |
Chemistry : DDE
ORF sequence :
MMRSMKNKYIYRSRISQKKFREILKYFAEDIEATKIANLTGISRISINKILKSIRVLISQECENISKFSGEIEIDESYFGAKRVRGKRGRGASGKQPVFG
MLKRDGKVYTQIVKNCSANELIPILSQFSELDSSTIYSDCWKAYDGLVDYGAKAHYRVKHSKNEFANGKNHINGIENFWGYAKHRLSKFKGIKKENFLLH
LKECEFRYNTKTIQENLYQKLLKLIRENPLKFN
MLKRDGKVYTQIVKNCSANELIPILSQFSELDSSTIYSDCWKAYDGLVDYGAKAHYRVKHSKNEFANGKNHINGIENFWGYAKHRLSKFKGIKKENFLLH
LKECEFRYNTKTIQENLYQKLLKLIRENPLKFN
Blast result :
Comments
ISCagr1 is 73% aa similar to ISPlba4.
References
1] ISfinder annotation (2017)
2] Madupu,R., Sebastian,Y., Durkin,A.S., Torralba,M., Methe,B., Sutton,G.G., Strausberg,R.L. and Nelson,K.E. (2009) Direct GenBank submission.
2] Madupu,R., Sebastian,Y., Durkin,A.S., Torralba,M., Methe,B., Sutton,G.G., Strausberg,R.L. and Nelson,K.E. (2009) Direct GenBank submission.