ISCagr1

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ACYG01000032 ND Campylobacter gracilis
Campylobacter gracilis RM3268
DNA section
IS Length : 746 bp

Ends


IR Length : 17/19

IRL : GGCTCTCTTTAACTTAAGCTCACGCAAGGGAGTAGCAAGATATGATGAGA
IRR : GGCTCAATTAAACTTAAGCGGATTTTCTCTTATCAATTTCAACAGTTTCT

Insertion site


Left flankDirect repeatRight flankDR Length
TAGCAAGCGTTTTTAAATTTATCAAAAACCTTGA0

DNA sequence

GGCTCTCTTTAACTTAAGCTCACGCAAGGGAGTAGCAAGATATGATGAGAAGCATGAAAAACAAGTATATCTATCGTTCCCGAATTTCGCAGAAGAAATT
TAGAGAAATTTTAAAGTATTTTGCAGAGGATATAGAGGCTACTAAAATAGCAAATTTAACCGGGATTTCTAGAATTTCCATTAATAAGATTCTAAAAAGC
ATTAGAGTTTTGATCTCTCAAGAATGTGAAAATATAAGCAAATTTAGCGGTGAAATAGAGATTGACGAAAGTTACTTCGGAGCTAAAAGAGTAAGAGGTA
AAAGAGGCAGAGGAGCAAGCGGAAAGCAGCCGGTATTTGGAATGCTTAAAAGAGACGGCAAAGTTTATACCCAGATAGTTAAAAACTGCTCTGCAAATGA
ACTGATACCGATACTATCGCAATTTAGCGAGCTTGATAGCTCTACTATCTATTCAGATTGCTGGAAAGCTTATGACGGATTGGTAGATTACGGAGCTAAA
GCTCACTATAGAGTAAAACATTCAAAGAATGAATTTGCTAATGGTAAAAATCATATAAACGGTATAGAAAACTTCTGGGGCTATGCTAAACATAGATTAT
CTAAATTTAAAGGTATTAAGAAAGAGAACTTCTTGCTTCATCTTAAAGAATGTGAATTTAGATATAATACTAAAACTATACAGGAAAACTTATATCAGAA
ACTGTTGAAATTGATAAGAGAAAATCCGCTTAAGTTTAATTGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
702 bp233 aa42743+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MMRSMKNKYIYRSRISQKKFREILKYFAEDIEATKIANLTGISRISINKILKSIRVLISQECENISKFSGEIEIDESYFGAKRVRGKRGRGASGKQPVFG
MLKRDGKVYTQIVKNCSANELIPILSQFSELDSSTIYSDCWKAYDGLVDYGAKAHYRVKHSKNEFANGKNHINGIENFWGYAKHRLSKFKGIKKENFLLH
LKECEFRYNTKTIQENLYQKLLKLIRENPLKFN

 

Blast result :
Comments
ISCagr1 is 73% aa similar to ISPlba4.
References
1] ISfinder annotation (2017)
2] Madupu,R., Sebastian,Y., Durkin,A.S., Torralba,M., Methe,B., Sutton,G.G., Strausberg,R.L. and Nelson,K.E. (2009) Direct GenBank submission.