ISfinder Mirror Site

ISCamsp1

Family IS1595
Group IS1016

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
ACWJ01000010	ND	Campylobacter sp.	Campylobacter sp. 10_1_50

DNA section

IS Length : 745 bp

Ends

IR Length : 16

IRL : GGCTCAAGATAAGTTAAAAACTTTCAAAGGAGTTTTAACTATGATCCTGC
IRR : GGCTCAAGATAAGTTAAGCGGATTCTCTCTTATCAATTTCAACAGTTTCT

Insertion site

Left flank	Direct repeat	Right flank	DR Length
ACCGGCTCACATTTATTAAA		TTATAAAAATAAAAG	0

DNA sequence

GGCTCAAGATAAGTTAAAAACTTTCAAAGGAGTTTTAACTATGATCCTGCCGATGAAAAATAAGTATATAGTCCGTTCCCGAATTTCGCAGAAGAAATTT
AGAGAAATTCTCAAGTATTTTGCAGAGGATATAGAGGCTACTAAAATAGCAAATTTAACCGGGATTTCTAGAATTTCCATCAACAAAATTCTAAAAAACA
TCAGAATTTTAATGGCTAGTGAGTGTGAAAAAATAAGTAAGTTTTCAGGTGAGATAGAGATTGACGAAAGCTACTTCGGAGCTAAAAGAGTAAGAGGTAA
GAGAGGTAGAGGAGCAGCAAATAAAACTCCGGTGTTCGGTATGCTTAAAAGAGATGGCAAAGTCTATACCCAAATAGTTAAGAACTGCTCTGCTAGTGAA
CTAATACCAATACTATCGCAATATAGCGAGCTTGATAGCTCTACTATATACTCTGATTGTTGGAAAGCTTATGATGGATTAGTAGATTATGCAGCTTTAG
CTCATTATAGAGTAAAGCATTCTAAGAATGAATTTGCTAATGGTAAAAACCATATAAATGGCATAGAAAATTTCTGGGGATACGCTAAACATAGACTAGC
TAAATTTAAAGGCATCAAGAAAGAGAATTTTTTACTTCATCTAAAGGAGTGTGAATTTAGATATAATACTAAAACTACACAGGAAAACTTATATCAGAAA
CTGTTGAAATTGATAAGAGAGAATCCGCTTAACTTATCTTGAGCC

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
702 bp	233 aa	41	742	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MILPMKNKYIVRSRISQKKFREILKYFAEDIEATKIANLTGISRISINKILKNIRILMASECEKISKFSGEIEIDESYFGAKRVRGKRGRGAANKTPVFG
MLKRDGKVYTQIVKNCSASELIPILSQYSELDSSTIYSDCWKAYDGLVDYAALAHYRVKHSKNEFANGKNHINGIENFWGYAKHRLAKFKGIKKENFLLH
LKECEFRYNTKTTQENLYQKLLKLIRENPLNLS

Blast result :

Comments

ISCamsp1 is 73% aa similar to ISDli1.

References

1] ISfinder annotation (2017)
2] Earl,A., Ward,D., Feldgarden,M., Gevers,D., Daigneault,M., Strauss,J., Allen-Vercoe,E., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A., Brown,A., Chapman,S.B., Chen,Z., Dunbar,C., Freedman,E., Gearin,G., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Howarth,C., Larson,L., Lui,A., MacDonald,P.J.P., Montmayeur,A., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Wortman,J., Nusbaum,C. and Birren,B. (2011) Direct GenBank submission.