ISLba1
- Family IS1595
- Group IS1016
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| MFPA01000033 | ND | Levybacteria bacterium | Levybacteria bacterium RIFCSPLOWO2_02_FULL_36_8b Candidatus Levybacteria bacterium RIFCSPLOWO2_02_FULL_36_8b |
DNA section
IS Length : 744 bp
Ends
IR Length : 16/18
IRL : GGGTCTAGATTACTTTAGCAACTAATAATTGCTAAAATAGATTGTCTAGA
IRR : GGGTCTAGGATACTTTAGAGCGGTTTTTTTCTAAAGTTTTTCAGTAACTC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ATTTTGATAAAAAACAAA | TAACAAATAATAAACTTT | 0 |
DNA sequence
GGGTCTAGATTACTTTAGCAACTAATAATTGCTAAAATAGATTGTCTAGACAATGAAAAATAAGTATTTGTTTAAGTCGCATATTTCAGAGCGTAAATTT
AGAAATATTTTAAAATATTTTTCTCAAGATTTTGACGCTACTAATGTTAGTTTCCTAACAGGCTTAACTCGTAAAACAATAAACAGATTATATCACAAAT
TCAGGTTAAGAATTTATCAGTTGGAAAAGCAGGATTCCGGCAAGATTAACGGAGAGGTTGAAATTGACGAGTCGTATTTTGGAGCAAGAAGAGTCAGGGG
CAAAAGAGGACGGGGAGCTAAGGGAAAAGTACCGGTTGTCGGACTTTTAAAAAGAAACGGCAAGGTATTTGTCCAAATCATTGAAAACTGCAAAAGACGG
GAATTAATGCCTATAATTAAGGGTAAGATACTTGAAGAATCAACAATTTACACTGACGGCTGGAAGAGCTATGATGGGCTAGTATTAAATGGATACAAGC
ATTATCGGATTTATCATAGTAAAAATGAATTTGCCAGAGGAAAAAATCATGTAAACGGCATTGAGAGTTTTTGGAGTTATACCAAACGAAGACTGAATAA
ATTTAACGGCATACGAAAAACTAAATTTCTCCTGCACCTAAAAGAATCCGAATACCGCTGGAATATCAGAACCAGTAATGGTAATATATACCAAGAGTTA
CTGAAAAACTTTAGAAAAAAACCGCTCTAAAGTATCCTAGACCC
AGAAATATTTTAAAATATTTTTCTCAAGATTTTGACGCTACTAATGTTAGTTTCCTAACAGGCTTAACTCGTAAAACAATAAACAGATTATATCACAAAT
TCAGGTTAAGAATTTATCAGTTGGAAAAGCAGGATTCCGGCAAGATTAACGGAGAGGTTGAAATTGACGAGTCGTATTTTGGAGCAAGAAGAGTCAGGGG
CAAAAGAGGACGGGGAGCTAAGGGAAAAGTACCGGTTGTCGGACTTTTAAAAAGAAACGGCAAGGTATTTGTCCAAATCATTGAAAACTGCAAAAGACGG
GAATTAATGCCTATAATTAAGGGTAAGATACTTGAAGAATCAACAATTTACACTGACGGCTGGAAGAGCTATGATGGGCTAGTATTAAATGGATACAAGC
ATTATCGGATTTATCATAGTAAAAATGAATTTGCCAGAGGAAAAAATCATGTAAACGGCATTGAGAGTTTTTGGAGTTATACCAAACGAAGACTGAATAA
ATTTAACGGCATACGAAAAACTAAATTTCTCCTGCACCTAAAAGAATCCGAATACCGCTGGAATATCAGAACCAGTAATGGTAATATATACCAAGAGTTA
CTGAAAAACTTTAGAAAAAAACCGCTCTAAAGTATCCTAGACCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 678 bp | 225 aa | 53 | 730 | + | No |
Chemistry : DDE
ORF sequence :
MKNKYLFKSHISERKFRNILKYFSQDFDATNVSFLTGLTRKTINRLYHKFRLRIYQLEKQDSGKINGEVEIDESYFGARRVRGKRGRGAKGKVPVVGLLK
RNGKVFVQIIENCKRRELMPIIKGKILEESTIYTDGWKSYDGLVLNGYKHYRIYHSKNEFARGKNHVNGIESFWSYTKRRLNKFNGIRKTKFLLHLKESE
YRWNIRTSNGNIYQELLKNFRKKPL
RNGKVFVQIIENCKRRELMPIIKGKILEESTIYTDGWKSYDGLVLNGYKHYRIYHSKNEFARGKNHVNGIESFWSYTKRRLNKFNGIRKTKFLLHLKESE
YRWNIRTSNGNIYQELLKNFRKKPL
Blast result :
Comments
ISLba1 is 73% aa similar to ISFtu3.
References
1] ISfinder annotation (2017)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.