ISfinder Mirror Site

ISLgu1

Family IS1595
Group IS1016

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
CP011131	ND	Lysobacter gummosus	Lysobacter gummosus 3.2.11

DNA section

IS Length : 749 bp

Ends

IR Length : 21/24

IRL : GGGTCTTAGGAAGCAAAGCTGCCCCATAACGCAGCTATCTTCCTGAAATG
IRR : GGGTCTTAGGAAGCAAACGCGCCCTCAGAGGGGGTTGGATCGTAGCAACT

Insertion site

Left flank	Direct repeat	Right flank	DR Length
AATCCCCCCCCCT	TTTTTCAA	AGGGGGGAACAGC	8
GCGCCAGCCCCCT	TTTTCAA	AGGGGGCGAGTTC	7

DNA sequence

GGGTCTTAGGAAGCAAAGCTGCCCCATAACGCAGCTATCTTCCTGAAATGCAAAGAAAAAACAGGTACTACAGCCGTTCGAAAATCAGCGAGGCCCGATT
TCGGGCGCTCGTGCGCTGTTGGTCGCTGGATCTCACCGCCACCAACACCGCTCAGTTGACCGGCTTGAGCGTGCGTTCGGTCAACACGATCTTCCTGGCC
ATGCGGCGCGTCATCGCGCACGACTGCGAGCAGCATTCGCCTTTCACCGGTCAGGTCGAAGTCGATGAATCCTTCTTCGGACCGTGGCGCGTGCGCGGCA
AACGCGGACGCGGCGCCGGCAAGAAAACCATTGTCTTCGGCATGCTCAAACGCGGCCAGCACGTCTACACCCAGATCGTGCCCAACTGCAAAACCGCCAC
GCTGCAGGCCTTAATTCGTGGGCATATTCGCCTGGAGAGCGAAATCCTCTCCGACTGCTTGTCCAGCTATGACGGACTGGTCGATCTGGGCTACGCCAAG
CACTGGCGCATCCGCCACAGCGGCAATCACTTCGCCGAGGGCGACAACCACATCAATGGCATCGAGAGCTTCTGGAGCTTCGCCAAGCGCCGCCTGGCCA
AGTTCAACGGCTTGGCCAAGACCACCTTCTACCTCCACCTCAAGGAGTGCGAGTTTCGCTTCAACCATCGCCACCACGACCTCTATCGGGCGACCCTTAA
GTTGCTACGATCCAACCCCCTCTGAGGGCGCGTTTGCTTCCTAAGACCC

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
678 bp	225 aa	48	725	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQRKNRYYSRSKISEARFRALVRCWSLDLTATNTAQLTGLSVRSVNTIFLAMRRVIAHDCEQHSPFTGQVEVDESFFGPWRVRGKRGRGAGKKTIVFGML
KRGQHVYTQIVPNCKTATLQALIRGHIRLESEILSDCLSSYDGLVDLGYAKHWRIRHSGNHFAEGDNHINGIESFWSFAKRRLAKFNGLAKTTFYLHLKE
CEFRFNHRHHDLYRATLKLLRSNPL

Blast result :

Comments

ISLgu1 is 79% aa similar to ISNtsp6.

References

1] ISfinder annotation (2017)
2] de Bruijn,I., Cheng,X., de Jager,V., Exposito,R.G., Watrous,J., Patel,N., Postma,J., Dorrestein,P.C., Kobayashi,D. and Raaijmakers,J.M. (2015) BMC Genomics 16 (1), 991.