ISHyma1
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JMIU01000001 | ND | Hydrogenovibrio marinus | Hydrogenovibrio marinus MH-110 |
DNA section
IS Length : 745 bp
Ends
IR Length : 18
IRL : GGGGCTTAGGAAGCAAAAACGATAAAAAGTCGTGTAAGCTTCTGATATGC
IRR : GGGGCTTAGGAAGCAAAACAACTAAATTGGGTCGTTCCTAAGTAATTTTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAACGCAAATATAA | AATATAA | ATAAACCGGA | 7 |
DNA sequence
GGGGCTTAGGAAGCAAAAACGATAAAAAGTCGTGTAAGCTTCTGATATGCCTTATAAAAATCGTTATCAAAAGTGCGGTAAAATTTCAGAGAGAAAATTT
AGAGAAATTCTCCGTTATTTCGCACTCGATTTAACCGCTTCTGACACAGCCCGTTTAACTGGAATTTCTGTCAGAAGCATTAATAATATTTACATCAAAA
TCCGATATCTTTTAGCCAACGAATGTGAAAAACAAACCCCATTCTCTGGCGTGATCGAATTAGATGAATCTTACTTTGGCCCTAAACGCATTCGTGGAAA
ACGAGGTCGCGGTGCCAAAGGTAAAACCATTGTGTTTGGCATCTTAAAACGTGACGATAAAGTTTACACCGAAATCGTTTCAGATGCCTCAAGTGCCAGT
TTATCAAGGGTTGTACGAGGTCACGTATCCATTGATAGCATCATCAATACCGATGGCTGGCGTGGTTACAATGGTTTAGTTGATGTTGGTTTTGAAAAAC
ATTATCGCGTTCATCATGGCGAGAATGAGTTTGCAAAAGGTCATCAACATATTAATGGTATAGAGTCATTTTGGAGCTTTGCTAAAGCAAGGCTGATGAA
ATTTAAAGGCGTGCCAAAACATACCTTTTATTATCATTTGAAAGAAACGGAATTCCGTTTCAATCACCGTCATAATGACCTATACAAAATACTTTTAAAA
TTACTTAGGAACGACCCAATTTAGTTGTTTTGCTTCCTAAGCCCC
AGAGAAATTCTCCGTTATTTCGCACTCGATTTAACCGCTTCTGACACAGCCCGTTTAACTGGAATTTCTGTCAGAAGCATTAATAATATTTACATCAAAA
TCCGATATCTTTTAGCCAACGAATGTGAAAAACAAACCCCATTCTCTGGCGTGATCGAATTAGATGAATCTTACTTTGGCCCTAAACGCATTCGTGGAAA
ACGAGGTCGCGGTGCCAAAGGTAAAACCATTGTGTTTGGCATCTTAAAACGTGACGATAAAGTTTACACCGAAATCGTTTCAGATGCCTCAAGTGCCAGT
TTATCAAGGGTTGTACGAGGTCACGTATCCATTGATAGCATCATCAATACCGATGGCTGGCGTGGTTACAATGGTTTAGTTGATGTTGGTTTTGAAAAAC
ATTATCGCGTTCATCATGGCGAGAATGAGTTTGCAAAAGGTCATCAACATATTAATGGTATAGAGTCATTTTGGAGCTTTGCTAAAGCAAGGCTGATGAA
ATTTAAAGGCGTGCCAAAACATACCTTTTATTATCATTTGAAAGAAACGGAATTCCGTTTCAATCACCGTCATAATGACCTATACAAAATACTTTTAAAA
TTACTTAGGAACGACCCAATTTAGTTGTTTTGCTTCCTAAGCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
678 bp | 225 aa | 47 | 724 | + | No |
Chemistry : DDE
ORF sequence :
MPYKNRYQKCGKISERKFREILRYFALDLTASDTARLTGISVRSINNIYIKIRYLLANECEKQTPFSGVIELDESYFGPKRIRGKRGRGAKGKTIVFGIL
KRDDKVYTEIVSDASSASLSRVVRGHVSIDSIINTDGWRGYNGLVDVGFEKHYRVHHGENEFAKGHQHINGIESFWSFAKARLMKFKGVPKHTFYYHLKE
TEFRFNHRHNDLYKILLKLLRNDPI
KRDDKVYTEIVSDASSASLSRVVRGHVSIDSIINTDGWRGYNGLVDVGFEKHYRVHHGENEFAKGHQHINGIESFWSFAKARLMKFKGVPKHTFYYHLKE
TEFRFNHRHNDLYKILLKLLRNDPI
Blast result :
Comments
ISHyma1 is 85% aa similar to ISNme3.
References
1] ISfinder annotation (2017)
2] Cha,H.J., Jo,B.H. and Hwang,B.H. (2014) Direct GenBank submission.
2] Cha,H.J., Jo,B.H. and Hwang,B.H. (2014) Direct GenBank submission.