ISHyma1

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JMIU01000001 ND Hydrogenovibrio marinus
Hydrogenovibrio marinus MH-110
DNA section
IS Length : 745 bp

Ends


IR Length : 18

IRL : GGGGCTTAGGAAGCAAAAACGATAAAAAGTCGTGTAAGCTTCTGATATGC
IRR : GGGGCTTAGGAAGCAAAACAACTAAATTGGGTCGTTCCTAAGTAATTTTA

Insertion site


Left flankDirect repeatRight flankDR Length
GAACGCAAATATAAAATATAAATAAACCGGA7

DNA sequence

GGGGCTTAGGAAGCAAAAACGATAAAAAGTCGTGTAAGCTTCTGATATGCCTTATAAAAATCGTTATCAAAAGTGCGGTAAAATTTCAGAGAGAAAATTT
AGAGAAATTCTCCGTTATTTCGCACTCGATTTAACCGCTTCTGACACAGCCCGTTTAACTGGAATTTCTGTCAGAAGCATTAATAATATTTACATCAAAA
TCCGATATCTTTTAGCCAACGAATGTGAAAAACAAACCCCATTCTCTGGCGTGATCGAATTAGATGAATCTTACTTTGGCCCTAAACGCATTCGTGGAAA
ACGAGGTCGCGGTGCCAAAGGTAAAACCATTGTGTTTGGCATCTTAAAACGTGACGATAAAGTTTACACCGAAATCGTTTCAGATGCCTCAAGTGCCAGT
TTATCAAGGGTTGTACGAGGTCACGTATCCATTGATAGCATCATCAATACCGATGGCTGGCGTGGTTACAATGGTTTAGTTGATGTTGGTTTTGAAAAAC
ATTATCGCGTTCATCATGGCGAGAATGAGTTTGCAAAAGGTCATCAACATATTAATGGTATAGAGTCATTTTGGAGCTTTGCTAAAGCAAGGCTGATGAA
ATTTAAAGGCGTGCCAAAACATACCTTTTATTATCATTTGAAAGAAACGGAATTCCGTTTCAATCACCGTCATAATGACCTATACAAAATACTTTTAAAA
TTACTTAGGAACGACCCAATTTAGTTGTTTTGCTTCCTAAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
678 bp225 aa47724+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPYKNRYQKCGKISERKFREILRYFALDLTASDTARLTGISVRSINNIYIKIRYLLANECEKQTPFSGVIELDESYFGPKRIRGKRGRGAKGKTIVFGIL
KRDDKVYTEIVSDASSASLSRVVRGHVSIDSIINTDGWRGYNGLVDVGFEKHYRVHHGENEFAKGHQHINGIESFWSFAKARLMKFKGVPKHTFYYHLKE
TEFRFNHRHNDLYKILLKLLRNDPI

 

Blast result :
Comments
ISHyma1 is 85% aa similar to ISNme3.
References
1] ISfinder annotation (2017)
2] Cha,H.J., Jo,B.H. and Hwang,B.H. (2014) Direct GenBank submission.