ISTne1
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JSZA01001633 | ND | Thiomargarita nelsonii | Thiomargarita nelsonii Candidatus Thiomargarita nelsonii |
DNA section
IS Length : 731 bp
Ends
IR Length : 18/20
IRL : GGGTCATGACTAGATGAGAGCCATTTGTTAGGTTCAAGTCTATGAAACAC
IRR : GGGTCATGACTAGGAGAGAGGGTTTTCTCGGCACAGTTTGAGGATTAGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CATTGCGTCTATTCTTTTA | TTCTTTTTTATGAAGTTACC | 0 |
DNA sequence
GGGTCATGACTAGATGAGAGCCATTTGTTAGGTTCAAGTCTATGAAACACATAAAGAATCGTTACCTGAGAAACTCGAAACTTTCTGAAGCCAAGTTCCG
CGAGATTATAAGGCTCTTCTCAGCCGATCTTACAGCGGTTCAAATCGCCCAGGTCGCCAACGTAAACCGCAACACCGTGAACCGAATTTTGCGTCTGATC
CGACGGCGAATTTTGGACTACACCGAGGATCAGCGTCCCTTTTTCGGCACCATTGAGGTCGACGAAAGCTGGTTTGGTGCCAAGCGTGTGAAGGGGAAAC
GCGGGCGCGGAGCCTATGGCAAAACCACCGTTTTCGGCGTCTACGAACGACAGGGGCAGGTCTATACTGAAATCGTCCCTGATTGCTCAAAGGCAACGCT
ACAAGGGATTATTCGTGGTAAAGTGGACCCTGAATCGGTGATAAACTCGGATGGCTGGGGTGGCTACAATGGTCTGGTCGACATCGGATATGGCCATTTT
CGTGTCGACCATTCACGCGATGAATTCGTGCGCGGCAAGGCTCATATCAACGGGATCGAGGGCTTCTGGGGATACGCAAAAGTCCGACTGGTGCGGTTTC
GTGGCATGCATCGCCAGACCTTCCTCTTGCACTTGAAAGAGACCGAGTTTCGCTTTAACCTCAGAGATCAGAACATCGGCAGGCTAATCCTCAAACTGTG
CCGAGAAAACCCTCTCTCCTAGTCATGACCC
CGAGATTATAAGGCTCTTCTCAGCCGATCTTACAGCGGTTCAAATCGCCCAGGTCGCCAACGTAAACCGCAACACCGTGAACCGAATTTTGCGTCTGATC
CGACGGCGAATTTTGGACTACACCGAGGATCAGCGTCCCTTTTTCGGCACCATTGAGGTCGACGAAAGCTGGTTTGGTGCCAAGCGTGTGAAGGGGAAAC
GCGGGCGCGGAGCCTATGGCAAAACCACCGTTTTCGGCGTCTACGAACGACAGGGGCAGGTCTATACTGAAATCGTCCCTGATTGCTCAAAGGCAACGCT
ACAAGGGATTATTCGTGGTAAAGTGGACCCTGAATCGGTGATAAACTCGGATGGCTGGGGTGGCTACAATGGTCTGGTCGACATCGGATATGGCCATTTT
CGTGTCGACCATTCACGCGATGAATTCGTGCGCGGCAAGGCTCATATCAACGGGATCGAGGGCTTCTGGGGATACGCAAAAGTCCGACTGGTGCGGTTTC
GTGGCATGCATCGCCAGACCTTCCTCTTGCACTTGAAAGAGACCGAGTTTCGCTTTAACCTCAGAGATCAGAACATCGGCAGGCTAATCCTCAAACTGTG
CCGAGAAAACCCTCTCTCCTAGTCATGACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
681 bp | 226 aa | 42 | 722 | + | No |
Chemistry : DDE
ORF sequence :
MKHIKNRYLRNSKLSEAKFREIIRLFSADLTAVQIAQVANVNRNTVNRILRLIRRRILDYTEDQRPFFGTIEVDESWFGAKRVKGKRGRGAYGKTTVFGV
YERQGQVYTEIVPDCSKATLQGIIRGKVDPESVINSDGWGGYNGLVDIGYGHFRVDHSRDEFVRGKAHINGIEGFWGYAKVRLVRFRGMHRQTFLLHLKE
TEFRFNLRDQNIGRLILKLCRENPLS
YERQGQVYTEIVPDCSKATLQGIIRGKVDPESVINSDGWGGYNGLVDIGYGHFRVDHSRDEFVRGKAHINGIEGFWGYAKVRLVRFRGMHRQTFLLHLKE
TEFRFNLRDQNIGRLILKLCRENPLS
Blast result :
Comments
ISTne1 is 78% aa similar to ISDli1.
References
1] ISfinder annotation (2017)
2] Fliss,P.S., Flood,B.E., Jones,D.S., Bailey,J.V., Dick,G.J., Jain,S. and Mussman,M. (2014) Direct GenBank submission.
2] Fliss,P.S., Flood,B.E., Jones,D.S., Bailey,J.V., Dick,G.J., Jain,S. and Mussman,M. (2014) Direct GenBank submission.