ISTne1

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JSZA01001633 ND Thiomargarita nelsonii
Thiomargarita nelsonii
Candidatus Thiomargarita nelsonii
DNA section
IS Length : 731 bp

Ends


IR Length : 18/20

IRL : GGGTCATGACTAGATGAGAGCCATTTGTTAGGTTCAAGTCTATGAAACAC
IRR : GGGTCATGACTAGGAGAGAGGGTTTTCTCGGCACAGTTTGAGGATTAGCC

Insertion site


Left flankDirect repeatRight flankDR Length
CATTGCGTCTATTCTTTTATTCTTTTTTATGAAGTTACC0

DNA sequence

GGGTCATGACTAGATGAGAGCCATTTGTTAGGTTCAAGTCTATGAAACACATAAAGAATCGTTACCTGAGAAACTCGAAACTTTCTGAAGCCAAGTTCCG
CGAGATTATAAGGCTCTTCTCAGCCGATCTTACAGCGGTTCAAATCGCCCAGGTCGCCAACGTAAACCGCAACACCGTGAACCGAATTTTGCGTCTGATC
CGACGGCGAATTTTGGACTACACCGAGGATCAGCGTCCCTTTTTCGGCACCATTGAGGTCGACGAAAGCTGGTTTGGTGCCAAGCGTGTGAAGGGGAAAC
GCGGGCGCGGAGCCTATGGCAAAACCACCGTTTTCGGCGTCTACGAACGACAGGGGCAGGTCTATACTGAAATCGTCCCTGATTGCTCAAAGGCAACGCT
ACAAGGGATTATTCGTGGTAAAGTGGACCCTGAATCGGTGATAAACTCGGATGGCTGGGGTGGCTACAATGGTCTGGTCGACATCGGATATGGCCATTTT
CGTGTCGACCATTCACGCGATGAATTCGTGCGCGGCAAGGCTCATATCAACGGGATCGAGGGCTTCTGGGGATACGCAAAAGTCCGACTGGTGCGGTTTC
GTGGCATGCATCGCCAGACCTTCCTCTTGCACTTGAAAGAGACCGAGTTTCGCTTTAACCTCAGAGATCAGAACATCGGCAGGCTAATCCTCAAACTGTG
CCGAGAAAACCCTCTCTCCTAGTCATGACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
681 bp226 aa42722+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKHIKNRYLRNSKLSEAKFREIIRLFSADLTAVQIAQVANVNRNTVNRILRLIRRRILDYTEDQRPFFGTIEVDESWFGAKRVKGKRGRGAYGKTTVFGV
YERQGQVYTEIVPDCSKATLQGIIRGKVDPESVINSDGWGGYNGLVDIGYGHFRVDHSRDEFVRGKAHINGIEGFWGYAKVRLVRFRGMHRQTFLLHLKE
TEFRFNLRDQNIGRLILKLCRENPLS

 

Blast result :
Comments
ISTne1 is 78% aa similar to ISDli1.
References
1] ISfinder annotation (2017)
2] Fliss,P.S., Flood,B.E., Jones,D.S., Bailey,J.V., Dick,G.J., Jain,S. and Mussman,M. (2014) Direct GenBank submission.