ISfinder Mirror Site

ISDeor2

Family IS1595
Group IS1016

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
CP014230	ND	Desulfomicrobium orale	Desulfomicrobium orale DSM 12838

DNA section

IS Length : 736 bp

Ends

IR Length : 13

IRL : GGGTCATGCCTAGTCCATGAGTCTCCATTCGACTATAAGGCTAGTCACGA
IRR : GGGTCATGCCTAGCTGAGTGGATTTTCTCTGAGCATTTTGAGCAGAAGTT

Insertion site

Left flank	Direct repeat	Right flank	DR Length
CTATGAATAA	TATGGTAA	TATCTCTTCA	8
GGCCACAAATAT	TTTTTCGT	AAAGGGGAGCTG	8
TATTGATTTAAA	ATAATTTA	TTATACCGGAGA	8
AAAGAGAAATAA	AAGAAGAT	ATAGTTATAATC	8
ATGGCTCGAAAA	AAGAAAAA	TTCCGGCGGTCC	8
ATATCAGGAGTA	TTCGCAAA	ATAGCCGAAACC	8
GGGTTGAGAGTT	TTGAAAAT	ATATCACTGCAT	8
CTTTATTAAATA	TTTCGTAT	TTATTTTTTTGA	8
ATTTTATGATAA	AAATTAAT	TTACTCCCTCAG	8
ATTTATTAATAA	ATGAATTT	AATATCTTAATA	8
TAATGTATATTT	TAACAATA	AAATATAGATAT	8
ATCTAGGATTATTTG	ATTTT	CTTTATGCTCAGGCC	5
TTTTATTCTATATAAAAATT		TAAATGTAAAATTAACTTGC	0
GAAAATTTGAATTATTTTTT		TTGCTCTTTTTTGGATACTT	0

DNA sequence

GGGTCATGCCTAGTCCATGAGTCTCCATTCGACTATAAGGCTAGTCACGACAATGAAAAACAAGTATGCGAAGCGTTCAAGAATTTCAGAGGCCAAAGTC
CGACAAATAGTGAAGCTGTTTGCCGTGGATTTGAATGCCCTGCAGATAGCTGAAATAGCCGGGGTAAATCGTAATACCGCGAACCGTTATCTGGCTGCTT
TCCGAGAGAGGATTGCCCGGTTCTGCGAGGCGGAGTCTCCTGTTCAAGGCGAAGTTGAGGTTGATGAAAGCTATTTTGGCGCACGCCGCGTTAAAGGAGT
CAGAGGCCGAGGAGCCAAGGGCAAAACCATTGTGTTCGGCTTATTCAAGCGTGAAGGTCGCGTTTATACCGAAATTGTCCCGGACTGTTCAAAAATCACC
CTCCAAGGGATCATCCGGGGCCGCGTGAAACTTGAAAGCATTATTCACTCTGATGGCTGGCGCGGCTATGATGGTCTCGTAGACCTAGGCTACCAAAAAC
ACTTCCGGGTTGAGCATGGCAACAATGAATTTGCCAATAAAAACTCACACATTAACGGCATTGAGAGCTTCTGGGCTTTTGCCAAAACACGACTTGTTCG
TTTTAGGGGTTTGCCCAAGCACACTTTTTACTTTCATTTGAAAGAATGTGAATTTCGCTTTAACCATAGAAACGAAGATAGTTATAAACTTCTGCTCAAA
ATGCTCAGAGAAAATCCACTCAGCTAGGCATGACCC

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
675 bp	224 aa	53	727	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKNKYAKRSRISEAKVRQIVKLFAVDLNALQIAEIAGVNRNTANRYLAAFRERIARFCEAESPVQGEVEVDESYFGARRVKGVRGRGAKGKTIVFGLFKR
EGRVYTEIVPDCSKITLQGIIRGRVKLESIIHSDGWRGYDGLVDLGYQKHFRVEHGNNEFANKNSHINGIESFWAFAKTRLVRFRGLPKHTFYFHLKECE
FRFNHRNEDSYKLLLKMLRENPLS

Blast result :

Comments

ISDeor2 is 88% aa similar to ISDli1.

References

1] ISfinder annotation (2017).
2] Holder,M.E., Ajami,N.J. and Petrosino,J.F. (2016) Direct GenBank submission.