ISDsba2

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MAXN01000185 ND Desulfuromonadales bacterium
Desulfuromonadales bacterium C00003094
DNA section
IS Length : 737 bp

Ends


IR Length : 18

IRL : GGGTCATGACTAGTTTAGCTATGCTTTAGAGGTGCTAAGCTATTGTCATA
IRR : GGGTCATGACTAGTTTAGAGGTTGATTTCGCAAAATACTAAGGATCAAAC

Insertion site


Left flankDirect repeatRight flankDR Length
TTGTATATTTTCAAATCCGTTTAAACTGCCA0

DNA sequence

GGGTCATGACTAGTTTAGCTATGCTTTAGAGGTGCTAAGCTATTGTCATAACAATGAAAAACAAGTACGCAAAAAGGGCGCACATTTCTGAACGTAAATT
TCAGCAACTTGTTCGCCTGTTTGCCGCAGGTCTGGAGGCATCCCAGACCGCTAACTTGACTCGCTTGAATCGCAATACAGTCAATCGCTATCTAACAAAA
ACCAGGCAACGCCTGGCTGAGTATTGCAATGCTCAATCTCCTTATTCAGGAGAAATCGAAGTAGACGAATCGTTCTTCGGTGCACGTCGCGTCAAGGGCA
AACGAAGCCGTGGTGCAGGCGGTAAAACAATCGTATTTGGCATTTTTCAACGGAACGGTCATGTCTATACAGAGATTGTTCCAGACTGCTCCAAGGCCAC
ATTACAAGCGGTTATACGCGGCAAAGTAGAGCTTGAAAGCATTATCTACTCAGACGGTTGGCGTGGCTATAACGGTCTGGTTGATGTTGGTTACGGCAAG
CACCTTCGTGTCGATCACGGCAAGGATGAGTTTGCCAAAGGTCGTAACCACATCAACGGAATTGAAGGCTTTTGGGGCCACGCAAAAACACGGCTCGTCC
GCTTCCGTGGCATGTCGCCAAACACCTTCAACTTGCATCTAAAAGAATGTGAGTTTAGGTTCAATCATAGAGGCCAGGATCTCTGTCGTTTGATCCTTAG
TATTTTGCGAAATCAACCTCTAAACTAGTCATGACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
675 bp224 aa54728+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKNKYAKRAHISERKFQQLVRLFAAGLEASQTANLTRLNRNTVNRYLTKTRQRLAEYCNAQSPYSGEIEVDESFFGARRVKGKRSRGAGGKTIVFGIFQR
NGHVYTEIVPDCSKATLQAVIRGKVELESIIYSDGWRGYNGLVDVGYGKHLRVDHGKDEFAKGRNHINGIEGFWGHAKTRLVRFRGMSPNTFNLHLKECE
FRFNHRGQDLCRLILSILRNQPLN

 

Blast result :
Comments
ISDsba2 is 81% aa similar to ISDli1.
References
1] ISfinder annotation (2017)
2] Skennerton,C.T. and Orphan,V.J. (2016) Direct GenBank submission.