ISDsba2
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MAXN01000185 | ND | Desulfuromonadales bacterium | Desulfuromonadales bacterium C00003094 |
DNA section
IS Length : 737 bp
Ends
IR Length : 18
IRL : GGGTCATGACTAGTTTAGCTATGCTTTAGAGGTGCTAAGCTATTGTCATA
IRR : GGGTCATGACTAGTTTAGAGGTTGATTTCGCAAAATACTAAGGATCAAAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTGTATATTTTCAAA | TCCGTTTAAACTGCCA | 0 |
DNA sequence
GGGTCATGACTAGTTTAGCTATGCTTTAGAGGTGCTAAGCTATTGTCATAACAATGAAAAACAAGTACGCAAAAAGGGCGCACATTTCTGAACGTAAATT
TCAGCAACTTGTTCGCCTGTTTGCCGCAGGTCTGGAGGCATCCCAGACCGCTAACTTGACTCGCTTGAATCGCAATACAGTCAATCGCTATCTAACAAAA
ACCAGGCAACGCCTGGCTGAGTATTGCAATGCTCAATCTCCTTATTCAGGAGAAATCGAAGTAGACGAATCGTTCTTCGGTGCACGTCGCGTCAAGGGCA
AACGAAGCCGTGGTGCAGGCGGTAAAACAATCGTATTTGGCATTTTTCAACGGAACGGTCATGTCTATACAGAGATTGTTCCAGACTGCTCCAAGGCCAC
ATTACAAGCGGTTATACGCGGCAAAGTAGAGCTTGAAAGCATTATCTACTCAGACGGTTGGCGTGGCTATAACGGTCTGGTTGATGTTGGTTACGGCAAG
CACCTTCGTGTCGATCACGGCAAGGATGAGTTTGCCAAAGGTCGTAACCACATCAACGGAATTGAAGGCTTTTGGGGCCACGCAAAAACACGGCTCGTCC
GCTTCCGTGGCATGTCGCCAAACACCTTCAACTTGCATCTAAAAGAATGTGAGTTTAGGTTCAATCATAGAGGCCAGGATCTCTGTCGTTTGATCCTTAG
TATTTTGCGAAATCAACCTCTAAACTAGTCATGACCC
TCAGCAACTTGTTCGCCTGTTTGCCGCAGGTCTGGAGGCATCCCAGACCGCTAACTTGACTCGCTTGAATCGCAATACAGTCAATCGCTATCTAACAAAA
ACCAGGCAACGCCTGGCTGAGTATTGCAATGCTCAATCTCCTTATTCAGGAGAAATCGAAGTAGACGAATCGTTCTTCGGTGCACGTCGCGTCAAGGGCA
AACGAAGCCGTGGTGCAGGCGGTAAAACAATCGTATTTGGCATTTTTCAACGGAACGGTCATGTCTATACAGAGATTGTTCCAGACTGCTCCAAGGCCAC
ATTACAAGCGGTTATACGCGGCAAAGTAGAGCTTGAAAGCATTATCTACTCAGACGGTTGGCGTGGCTATAACGGTCTGGTTGATGTTGGTTACGGCAAG
CACCTTCGTGTCGATCACGGCAAGGATGAGTTTGCCAAAGGTCGTAACCACATCAACGGAATTGAAGGCTTTTGGGGCCACGCAAAAACACGGCTCGTCC
GCTTCCGTGGCATGTCGCCAAACACCTTCAACTTGCATCTAAAAGAATGTGAGTTTAGGTTCAATCATAGAGGCCAGGATCTCTGTCGTTTGATCCTTAG
TATTTTGCGAAATCAACCTCTAAACTAGTCATGACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
675 bp | 224 aa | 54 | 728 | + | No |
Chemistry : DDE
ORF sequence :
MKNKYAKRAHISERKFQQLVRLFAAGLEASQTANLTRLNRNTVNRYLTKTRQRLAEYCNAQSPYSGEIEVDESFFGARRVKGKRSRGAGGKTIVFGIFQR
NGHVYTEIVPDCSKATLQAVIRGKVELESIIYSDGWRGYNGLVDVGYGKHLRVDHGKDEFAKGRNHINGIEGFWGHAKTRLVRFRGMSPNTFNLHLKECE
FRFNHRGQDLCRLILSILRNQPLN
NGHVYTEIVPDCSKATLQAVIRGKVELESIIYSDGWRGYNGLVDVGYGKHLRVDHGKDEFAKGRNHINGIEGFWGHAKTRLVRFRGMSPNTFNLHLKECE
FRFNHRGQDLCRLILSILRNQPLN
Blast result :
Comments
ISDsba2 is 81% aa similar to ISDli1.
References
1] ISfinder annotation (2017)
2] Skennerton,C.T. and Orphan,V.J. (2016) Direct GenBank submission.
2] Skennerton,C.T. and Orphan,V.J. (2016) Direct GenBank submission.