ISBaz1

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CVUD02000220 ND Bathymodiolus azoricus
Bathymodiolus azoricus thioautotrophic gill symbiont BazSymB
DNA section
IS Length : 729 bp

Ends


IR Length : 17/18

IRL : GGGTCATGACAACTTAAGTATGTTTAAAAACCTGTTAAAGCATCGTCATG
IRR : GGGTCATGTCAACTTAAGCGATTCTTTTCTGAACATTCCAAGCAATATTT

Insertion site


Left flankDirect repeatRight flankDR Length
CTTAATAAATATTTTAAATAAACAA0

DNA sequence

GGGTCATGACAACTTAAGTATGTTTAAAAACCTGTTAAAGCATCGTCATGAAAGTAAAAAACAAGTATGTAACTCGTTCTCATATTTCAGAGGCTAAATT
TAGACAAATAATTTTGTTATTTTCTGAGGATTTGAGTGCAACTCAAATATCTCATTTAACAAAATTAAGCAGACAAACAATTAACAAATATTTGAGCGCT
ATTAGACTTAGAATTTTAGAGTTATCTCAAATTCAATCTGCCCCACTAGTGGGGCAGATTGAAGTTGACGAATCTTATTTTGGCGCCCAGCGCGTCCGCG
GAAAACGCGACCGAGGCGCCAGGGGTAAAACGATAGTGTTTGGCTTATTAAAACGAGGAGGCAAGGTTTATACTGAAATCGTCCCAGATTGTAAGAGTGC
TACTCTACAAAGGATTATCAAGGGTAAGACTAGTGTAGAAAGTGTTATTCATTCAGATGGATGGCGTGGGTATAATGGGCTTGTAGATTTTGGCTATAAA
AAGCATTTTAGAGTGCATTATAGTAAGAATGAATTTGCCAGAGGCAACTCTCATATTAATGGCATTGAATCATTTTGGGGTTATGCTAAAAATAGACTGG
TAAAGTTTAAAGGAATGAATAAAAGTATGTTTAATTTGCACCTTAAAGAATGCGAATTTAGATTCAATAATCGCAAGCAAAATATTGCTTGGAATGTTCA
GAAAAGAATCGCTTAAGTTGACATGACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
669 bp222 aa48716+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKVKNKYVTRSHISEAKFRQIILLFSEDLSATQISHLTKLSRQTINKYLSAIRLRILELSQIQSAPLVGQIEVDESYFGAQRVRGKRDRGARGKTIVFGL
LKRGGKVYTEIVPDCKSATLQRIIKGKTSVESVIHSDGWRGYNGLVDFGYKKHFRVHYSKNEFARGNSHINGIESFWGYAKNRLVKFKGMNKSMFNLHLK
ECEFRFNNRKQNIAWNVQKRIA

 

Blast result :
Comments
ISBaz1 is 81% aa similar to ISDli1.
References
1] ISfinder annotation (2017)
2] Petersen,Jillian. and Sayavedra,Lizbeth. (2015) Direct GenBank submission.