ISDbac1

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LJTL01000174 ND Desulfobacterales bacterium
Desulfobacterales bacterium SG8_35_2
DNA section
IS Length : 737 bp

Ends


IR Length : 18

IRL : GGGTCATGATTAGAACAGCACTTTAATTTGTGCTATAAGTTTCTTTCATG
IRR : GGGTCATGATTAGAACAGAGGATTTTTTCTGAGAATTTCAAGCATCAAAT

Insertion site


Left flankDirect repeatRight flankDR Length
GGTAATAAATTTTAAAATTTATTA0

DNA sequence

GGGTCATGATTAGAACAGCACTTTAATTTGTGCTATAAGTTTCTTTCATGACTGTTAAAAATAAGTATGCAAATCGTTCCAAAATTTCAGAGGGTAAATT
TCGCCAAATTGTCAAACTGTTTTCAATCGATTTGGACGCCTCTCAAATTGCTAAAATTTCCGGACTGAACCGGAATACTATTAACCGGTATCTCACAGGT
ATCAGAAAGAGAATTGCGGAATTCTGTGAGAGACAATCTCCATTTTCTGGAGAAGTTGAAGTTGATGAAAGCTTCTTTGGCGCTCGTCGCATCAAAGGTA
AAAGAGGTCGTGGAGCTTTCGGAAAAACAATTGTATTCGGTATCTTCAAACGCAATGGGAGTGTCTTTACTGAAATTGTCCCTGATTGTCGAAGAGCCAC
GCTGCAAGGAGTTATTCGAGGCCGTGTAGACCTGGAATCTGTTATCCACTCGGACGGCTGGAGAGGCTACAACGGACTCGTTGATCTCGGATATAAGAAG
CATTTTAGAGTCAATCATGGACAAGACCAATTTGTTCATGATAAAAGTCATATCAACGGAATTGAATCCTTCTGGGGTTATGCCAAAACTAGACTTTCTA
AATTCCGAGGTATGAATAGAAAAACGTTCTATCTGCATCTTAAAGAATGTGAATTTAGGTTTAATAACAGAGGAAAAAATCTATATCATTTGATGCTTGA
AATTCTCAGAAAAAATCCTCTGTTCTAATCATGACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
681 bp226 aa48728+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTVKNKYANRSKISEGKFRQIVKLFSIDLDASQIAKISGLNRNTINRYLTGIRKRIAEFCERQSPFSGEVEVDESFFGARRIKGKRGRGAFGKTIVFGIF
KRNGSVFTEIVPDCRRATLQGVIRGRVDLESVIHSDGWRGYNGLVDLGYKKHFRVNHGQDQFVHDKSHINGIESFWGYAKTRLSKFRGMNRKTFYLHLKE
CEFRFNNRGKNLYHLMLEILRKNPLF

 

Blast result :
Comments
ISDbac1 is 86% aa similar to ISDli1.
References
1] ISfinder annotation (2017)
2] Baker,B.J., Lazar,C.S., Teske,A.P. and Dick,G.J. (2015) Microbiome 3, 14.