ISDbac1
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LJTL01000174 | ND | Desulfobacterales bacterium | Desulfobacterales bacterium SG8_35_2 |
DNA section
IS Length : 737 bp
Ends
IR Length : 18
IRL : GGGTCATGATTAGAACAGCACTTTAATTTGTGCTATAAGTTTCTTTCATG
IRR : GGGTCATGATTAGAACAGAGGATTTTTTCTGAGAATTTCAAGCATCAAAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGTAATAAATTTT | AAAATTTATTA | 0 |
DNA sequence
GGGTCATGATTAGAACAGCACTTTAATTTGTGCTATAAGTTTCTTTCATGACTGTTAAAAATAAGTATGCAAATCGTTCCAAAATTTCAGAGGGTAAATT
TCGCCAAATTGTCAAACTGTTTTCAATCGATTTGGACGCCTCTCAAATTGCTAAAATTTCCGGACTGAACCGGAATACTATTAACCGGTATCTCACAGGT
ATCAGAAAGAGAATTGCGGAATTCTGTGAGAGACAATCTCCATTTTCTGGAGAAGTTGAAGTTGATGAAAGCTTCTTTGGCGCTCGTCGCATCAAAGGTA
AAAGAGGTCGTGGAGCTTTCGGAAAAACAATTGTATTCGGTATCTTCAAACGCAATGGGAGTGTCTTTACTGAAATTGTCCCTGATTGTCGAAGAGCCAC
GCTGCAAGGAGTTATTCGAGGCCGTGTAGACCTGGAATCTGTTATCCACTCGGACGGCTGGAGAGGCTACAACGGACTCGTTGATCTCGGATATAAGAAG
CATTTTAGAGTCAATCATGGACAAGACCAATTTGTTCATGATAAAAGTCATATCAACGGAATTGAATCCTTCTGGGGTTATGCCAAAACTAGACTTTCTA
AATTCCGAGGTATGAATAGAAAAACGTTCTATCTGCATCTTAAAGAATGTGAATTTAGGTTTAATAACAGAGGAAAAAATCTATATCATTTGATGCTTGA
AATTCTCAGAAAAAATCCTCTGTTCTAATCATGACCC
TCGCCAAATTGTCAAACTGTTTTCAATCGATTTGGACGCCTCTCAAATTGCTAAAATTTCCGGACTGAACCGGAATACTATTAACCGGTATCTCACAGGT
ATCAGAAAGAGAATTGCGGAATTCTGTGAGAGACAATCTCCATTTTCTGGAGAAGTTGAAGTTGATGAAAGCTTCTTTGGCGCTCGTCGCATCAAAGGTA
AAAGAGGTCGTGGAGCTTTCGGAAAAACAATTGTATTCGGTATCTTCAAACGCAATGGGAGTGTCTTTACTGAAATTGTCCCTGATTGTCGAAGAGCCAC
GCTGCAAGGAGTTATTCGAGGCCGTGTAGACCTGGAATCTGTTATCCACTCGGACGGCTGGAGAGGCTACAACGGACTCGTTGATCTCGGATATAAGAAG
CATTTTAGAGTCAATCATGGACAAGACCAATTTGTTCATGATAAAAGTCATATCAACGGAATTGAATCCTTCTGGGGTTATGCCAAAACTAGACTTTCTA
AATTCCGAGGTATGAATAGAAAAACGTTCTATCTGCATCTTAAAGAATGTGAATTTAGGTTTAATAACAGAGGAAAAAATCTATATCATTTGATGCTTGA
AATTCTCAGAAAAAATCCTCTGTTCTAATCATGACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
681 bp | 226 aa | 48 | 728 | + | No |
Chemistry : DDE
ORF sequence :
MTVKNKYANRSKISEGKFRQIVKLFSIDLDASQIAKISGLNRNTINRYLTGIRKRIAEFCERQSPFSGEVEVDESFFGARRIKGKRGRGAFGKTIVFGIF
KRNGSVFTEIVPDCRRATLQGVIRGRVDLESVIHSDGWRGYNGLVDLGYKKHFRVNHGQDQFVHDKSHINGIESFWGYAKTRLSKFRGMNRKTFYLHLKE
CEFRFNNRGKNLYHLMLEILRKNPLF
KRNGSVFTEIVPDCRRATLQGVIRGRVDLESVIHSDGWRGYNGLVDLGYKKHFRVNHGQDQFVHDKSHINGIESFWGYAKTRLSKFRGMNRKTFYLHLKE
CEFRFNNRGKNLYHLMLEILRKNPLF
Blast result :
Comments
ISDbac1 is 86% aa similar to ISDli1.
References
1] ISfinder annotation (2017)
2] Baker,B.J., Lazar,C.S., Teske,A.P. and Dick,G.J. (2015) Microbiome 3, 14.
2] Baker,B.J., Lazar,C.S., Teske,A.P. and Dick,G.J. (2015) Microbiome 3, 14.