ISNtsp6
- Family IS1595
- Group IS1016
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP002553 | ND | Nitrosomonas sp. | Nitrosomonas sp. AL212 plasmid pNAL21201 |
DNA section
IS Length : 738 bp
Ends
IR Length : 17
IRL : GGGTCTTAGGAAGTTAAGCACTTATTAAAGTGTGTTAACTTACTGAGATG
IRR : GGGTCTTAGGAAGTTAAAGCGGGTTAGAACGTAATAATTTGAGAATTGCA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CGCATACCAGGAATA | AAAAAATA | TTCTTTTTGATGA | 8 |
DNA sequence
GGGTCTTAGGAAGTTAAGCACTTATTAAAGTGTGTTAACTTACTGAGATGAATGTTAAAAATAGATACTATATTCGTTCTCGAATCAGAGAAGCGAAATT
CAGACAACTTATTCGGTATTTTTCCCTGGATTTTACTGCTACCAGTACAGCTCAGTTGAGCGGAATTTCGATTCGATCCGTCAATAGCATTTACCTTAAA
ATACGACAACGCATTGCCCAATGCTGTGAGCTTGAATCGCCTCTGCAAGGTTCTGTAGAGGTTGATGAGTCTTATTTTGGCGCGCAACGCGTCCGGGGGA
AAAGAGGTCGGGGCGCCTATGGCAAAACAATCGTCTTTGGTGTACTCAAGCGTCAAGGAAAGGTTTATACAGAGATTGTTCCTGATTGCTCCAAAGCAAC
ACTGCAAGCTATTATCCGTGGACATGTGGCGCCAGATACTGTGATTCATTCGGATGGATGGCGCGGCTATGACGGATTGGTCGATATCGGCTTTGATAAA
CACTTCAGGGTTCATCATGGCGACAATGAATTTGCCAGTGGCGAACGGCATATTAACGGTATTGAATCTTTCTGGAGTTTTGCCAAACGCCGCTTGGCAA
AGTTCAACGGCGTACCTGAACATACCTTTTATCTGCACCTGAAAGAAACCGAATTTCGTTTTAATCATCGCCGTGATAATCTCTACTATGCAATTCTCAA
ATTATTACGTTCTAACCCGCTTTAACTTCCTAAGACCC
CAGACAACTTATTCGGTATTTTTCCCTGGATTTTACTGCTACCAGTACAGCTCAGTTGAGCGGAATTTCGATTCGATCCGTCAATAGCATTTACCTTAAA
ATACGACAACGCATTGCCCAATGCTGTGAGCTTGAATCGCCTCTGCAAGGTTCTGTAGAGGTTGATGAGTCTTATTTTGGCGCGCAACGCGTCCGGGGGA
AAAGAGGTCGGGGCGCCTATGGCAAAACAATCGTCTTTGGTGTACTCAAGCGTCAAGGAAAGGTTTATACAGAGATTGTTCCTGATTGCTCCAAAGCAAC
ACTGCAAGCTATTATCCGTGGACATGTGGCGCCAGATACTGTGATTCATTCGGATGGATGGCGCGGCTATGACGGATTGGTCGATATCGGCTTTGATAAA
CACTTCAGGGTTCATCATGGCGACAATGAATTTGCCAGTGGCGAACGGCATATTAACGGTATTGAATCTTTCTGGAGTTTTGCCAAACGCCGCTTGGCAA
AGTTCAACGGCGTACCTGAACATACCTTTTATCTGCACCTGAAAGAAACCGAATTTCGTTTTAATCATCGCCGTGATAATCTCTACTATGCAATTCTCAA
ATTATTACGTTCTAACCCGCTTTAACTTCCTAAGACCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 678 bp | 225 aa | 48 | 725 | + | No |
Chemistry : DDE
ORF sequence :
MNVKNRYYIRSRIREAKFRQLIRYFSLDFTATSTAQLSGISIRSVNSIYLKIRQRIAQCCELESPLQGSVEVDESYFGAQRVRGKRGRGAYGKTIVFGVL
KRQGKVYTEIVPDCSKATLQAIIRGHVAPDTVIHSDGWRGYDGLVDIGFDKHFRVHHGDNEFASGERHINGIESFWSFAKRRLAKFNGVPEHTFYLHLKE
TEFRFNHRRDNLYYAILKLLRSNPL
KRQGKVYTEIVPDCSKATLQAIIRGHVAPDTVIHSDGWRGYDGLVDIGFDKHFRVHHGDNEFASGERHINGIESFWSFAKRRLAKFNGVPEHTFYLHLKE
TEFRFNHRRDNLYYAILKLLRSNPL
Blast result :
Comments
ISNtsp6 is 80% aa similar to ISDli1.
References
1] ISfinder annotation (2017)
2] Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Chertkov,O., Held,B., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Mikhailova,N., Pagani,I., Suwa,Y., Klotz,M.G., Bollmann,A., Stein,L.Y., Laanbroek,H.J., Arp,D.J., Norton,J.M. and Woyke,T. (2011) Direct GenBank submission.
2] Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Chertkov,O., Held,B., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Mikhailova,N., Pagani,I., Suwa,Y., Klotz,M.G., Bollmann,A., Stein,L.Y., Laanbroek,H.J., Arp,D.J., Norton,J.M. and Woyke,T. (2011) Direct GenBank submission.