ISPlba4
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MHZC01000403 | ND | Planctomycetes bacterium | Planctomycetes bacterium RIFOXYB12 |
DNA section
IS Length : 736 bp
Ends
IR Length : 23
IRL : GGGTCTTGACTAGAACAGAGCGTAGCAATATGCTTTGGACATAGTCAGGG
IRR : GGGTCTTGACTAGAACAGAGCGTTTTGTCTAATCATTTTTAACAGTATAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTTTAACTATAAAATAAAGAA | TTATTAAATAATGGTGGATA | 0 |
DNA sequence
GGGTCTTGACTAGAACAGAGCGTAGCAATATGCTTTGGACATAGTCAGGGCAATGAAAAACAAGTATGCAAACCGTTCAAAAATTTCTGAGTCTAAAATC
AGGCAATTGTTAAAGCATTTTGCTCTGGATTTAGACGCACAGCGAATCGCTGTTTTATGTAATTTAAATCGCAACACTGTTAATAGATATCTTAATATGA
TTAGAATAAGGATAGCTGAATTTTGTGAACAAAACTCTCCATTCAGAGGAGAGATAGAAGTTGATGAATCCTATTTTGGTGCACGCAGACAAAAAGGCAA
AAGAGGCAGAGGCGCTTATGGTAAAACACCTGTTTTTGGTATTCTGCAAAGAGGCGGCGAAGTCTATACAGAGATTGTGCCAAACTGCGCTAAAGCCACG
CTGCAAGCCATTATTCGTGGCAAAGTATCTCCTGAAAGTATTATTCATTCTGACCAATGGAGAGGTTATAACGGACTGGTGGATATCGGCTATGAGAAGC
ACTATAGGGTTAAGCACGGTGATGATGAGTTTGTTAATAATAAGAGTCATATTAACGGCATAGAGTCTTTCTGGTCTTATTCTAAAAGACGACTTCAGAA
GTTTCATGGTGTGCCTCAAAACACTTTTTATCTGCACCTTAAAGAATGTGAATTTAGATTTAATCATCGTAATGAAAATATTTATGCTATACTGTTAAAA
ATGATTAGACAAAACGCTCTGTTCTAGTCAAGACCC
AGGCAATTGTTAAAGCATTTTGCTCTGGATTTAGACGCACAGCGAATCGCTGTTTTATGTAATTTAAATCGCAACACTGTTAATAGATATCTTAATATGA
TTAGAATAAGGATAGCTGAATTTTGTGAACAAAACTCTCCATTCAGAGGAGAGATAGAAGTTGATGAATCCTATTTTGGTGCACGCAGACAAAAAGGCAA
AAGAGGCAGAGGCGCTTATGGTAAAACACCTGTTTTTGGTATTCTGCAAAGAGGCGGCGAAGTCTATACAGAGATTGTGCCAAACTGCGCTAAAGCCACG
CTGCAAGCCATTATTCGTGGCAAAGTATCTCCTGAAAGTATTATTCATTCTGACCAATGGAGAGGTTATAACGGACTGGTGGATATCGGCTATGAGAAGC
ACTATAGGGTTAAGCACGGTGATGATGAGTTTGTTAATAATAAGAGTCATATTAACGGCATAGAGTCTTTCTGGTCTTATTCTAAAAGACGACTTCAGAA
GTTTCATGGTGTGCCTCAAAACACTTTTTATCTGCACCTTAAAGAATGTGAATTTAGATTTAATCATCGTAATGAAAATATTTATGCTATACTGTTAAAA
ATGATTAGACAAAACGCTCTGTTCTAGTCAAGACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
675 bp | 224 aa | 53 | 727 | + | No |
Chemistry : DDE
ORF sequence :
MKNKYANRSKISESKIRQLLKHFALDLDAQRIAVLCNLNRNTVNRYLNMIRIRIAEFCEQNSPFRGEIEVDESYFGARRQKGKRGRGAYGKTPVFGILQR
GGEVYTEIVPNCAKATLQAIIRGKVSPESIIHSDQWRGYNGLVDIGYEKHYRVKHGDDEFVNNKSHINGIESFWSYSKRRLQKFHGVPQNTFYLHLKECE
FRFNHRNENIYAILLKMIRQNALF
GGEVYTEIVPNCAKATLQAIIRGKVSPESIIHSDQWRGYNGLVDIGYEKHYRVKHGDDEFVNNKSHINGIESFWSYSKRRLQKFHGVPQNTFYLHLKECE
FRFNHRNENIYAILLKMIRQNALF
Blast result :
Comments
ISPlba4 is 81% aa similar to ISDli1.
References
1] ISfinder annotation (2017)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.