ISPlba4

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MHZC01000403 ND Planctomycetes bacterium
Planctomycetes bacterium RIFOXYB12
DNA section
IS Length : 736 bp

Ends


IR Length : 23

IRL : GGGTCTTGACTAGAACAGAGCGTAGCAATATGCTTTGGACATAGTCAGGG
IRR : GGGTCTTGACTAGAACAGAGCGTTTTGTCTAATCATTTTTAACAGTATAG

Insertion site


Left flankDirect repeatRight flankDR Length
GTTTAACTATAAAATAAAGAATTATTAAATAATGGTGGATA0

DNA sequence

GGGTCTTGACTAGAACAGAGCGTAGCAATATGCTTTGGACATAGTCAGGGCAATGAAAAACAAGTATGCAAACCGTTCAAAAATTTCTGAGTCTAAAATC
AGGCAATTGTTAAAGCATTTTGCTCTGGATTTAGACGCACAGCGAATCGCTGTTTTATGTAATTTAAATCGCAACACTGTTAATAGATATCTTAATATGA
TTAGAATAAGGATAGCTGAATTTTGTGAACAAAACTCTCCATTCAGAGGAGAGATAGAAGTTGATGAATCCTATTTTGGTGCACGCAGACAAAAAGGCAA
AAGAGGCAGAGGCGCTTATGGTAAAACACCTGTTTTTGGTATTCTGCAAAGAGGCGGCGAAGTCTATACAGAGATTGTGCCAAACTGCGCTAAAGCCACG
CTGCAAGCCATTATTCGTGGCAAAGTATCTCCTGAAAGTATTATTCATTCTGACCAATGGAGAGGTTATAACGGACTGGTGGATATCGGCTATGAGAAGC
ACTATAGGGTTAAGCACGGTGATGATGAGTTTGTTAATAATAAGAGTCATATTAACGGCATAGAGTCTTTCTGGTCTTATTCTAAAAGACGACTTCAGAA
GTTTCATGGTGTGCCTCAAAACACTTTTTATCTGCACCTTAAAGAATGTGAATTTAGATTTAATCATCGTAATGAAAATATTTATGCTATACTGTTAAAA
ATGATTAGACAAAACGCTCTGTTCTAGTCAAGACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
675 bp224 aa53727+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKNKYANRSKISESKIRQLLKHFALDLDAQRIAVLCNLNRNTVNRYLNMIRIRIAEFCEQNSPFRGEIEVDESYFGARRQKGKRGRGAYGKTPVFGILQR
GGEVYTEIVPNCAKATLQAIIRGKVSPESIIHSDQWRGYNGLVDIGYEKHYRVKHGDDEFVNNKSHINGIESFWSYSKRRLQKFHGVPQNTFYLHLKECE
FRFNHRNENIYAILLKMIRQNALF

 

Blast result :
Comments
ISPlba4 is 81% aa similar to ISDli1.
References
1] ISfinder annotation (2017)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.