ISDli1

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FRDI01000012 ND Desulfovibrio litoralis
Desulfovibrio litoralis DSM 11393
DNA section
IS Length : 736 bp

Ends


IR Length : 18/19

IRL : GGGTCAAGACTAGAACAGCATTAAAAAAAGTGCTATAAAGCCAGTCATGA
IRR : GGGTCATGACTAGAACAGCGGTTTATTTTTGAGAAATTTAAGAATTAATT

Insertion site


Left flankDirect repeatRight flankDR Length
TATGTCCATTAAAGAAATAAAAAAATATGCCTTATT8

DNA sequence

GGGTCAAGACTAGAACAGCATTAAAAAAAGTGCTATAAAGCCAGTCATGACAATGAAAAACAAGTATATTTTTCGTTCAAAAATTTCAGAGGCAAAATTA
CGCCAAATAGTAAAACTTTTTTGTATTGATTTAAATGCAACCCAAATATCGCAAGTTGTTGAATTAAATAGAAATACAATAAATCGTTTATTGTTAGGCA
TAAGAGAACGCATTGCTGAATTTTGTGAGGAACAATCTCCAGTTTCTGGAGAAGTAGAGGTTGATGAAAGCTACTTCGGAGCCCGTCGCATAAAAGGGCA
ACGAGGTAGAGGAGCTAGAGGGAAAACTATTGTTTTTGGGCTATTTAAGCGTAATGGCAGGGTTTATACAGAGATAGTCCCTGACTGTTCCAGAAGCACA
TTACAAGGTATTATTCGTGGAAAAATAAGCCTTGATAGCGTCATACACTCTGACGGCTGGAGAGGCTACAATGGCTTAGTTGATCTTGGTTATCTTAAAC
ATTTTCGGGTTCAACATGGTGCTAACGAATTTGCTAATAAAGATAGTCATATCAATGGGATTGAAAGTTTTTGGGGTTATGCAAAAACTCGCCTTGTACG
CTTTAGAGGGTTACAAAAACACACCTTTTACTTCCACTTGAAAGAATGTGAATTTAGGTTTAATTATAGACAAGAAGACACCTATAAATTAATTCTTAAA
TTTCTCAAAAATAAACCGCTGTTCTAGTCATGACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
681 bp226 aa47727+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTMKNKYIFRSKISEAKLRQIVKLFCIDLNATQISQVVELNRNTINRLLLGIRERIAEFCEEQSPVSGEVEVDESYFGARRIKGQRGRGARGKTIVFGLF
KRNGRVYTEIVPDCSRSTLQGIIRGKISLDSVIHSDGWRGYNGLVDLGYLKHFRVQHGANEFANKDSHINGIESFWGYAKTRLVRFRGLQKHTFYFHLKE
CEFRFNYRQEDTYKLILKFLKNKPLF

 

Blast result :
Comments
ISDli1 is 76% aa similar to ISNme3.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.