ISDli1
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FRDI01000012 | ND | Desulfovibrio litoralis | Desulfovibrio litoralis DSM 11393 |
DNA section
IS Length : 736 bp
Ends
IR Length : 18/19
IRL : GGGTCAAGACTAGAACAGCATTAAAAAAAGTGCTATAAAGCCAGTCATGA
IRR : GGGTCATGACTAGAACAGCGGTTTATTTTTGAGAAATTTAAGAATTAATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATGTCCATTAAAGAA | ATAAAAAA | ATATGCCTTATT | 8 |
DNA sequence
GGGTCAAGACTAGAACAGCATTAAAAAAAGTGCTATAAAGCCAGTCATGACAATGAAAAACAAGTATATTTTTCGTTCAAAAATTTCAGAGGCAAAATTA
CGCCAAATAGTAAAACTTTTTTGTATTGATTTAAATGCAACCCAAATATCGCAAGTTGTTGAATTAAATAGAAATACAATAAATCGTTTATTGTTAGGCA
TAAGAGAACGCATTGCTGAATTTTGTGAGGAACAATCTCCAGTTTCTGGAGAAGTAGAGGTTGATGAAAGCTACTTCGGAGCCCGTCGCATAAAAGGGCA
ACGAGGTAGAGGAGCTAGAGGGAAAACTATTGTTTTTGGGCTATTTAAGCGTAATGGCAGGGTTTATACAGAGATAGTCCCTGACTGTTCCAGAAGCACA
TTACAAGGTATTATTCGTGGAAAAATAAGCCTTGATAGCGTCATACACTCTGACGGCTGGAGAGGCTACAATGGCTTAGTTGATCTTGGTTATCTTAAAC
ATTTTCGGGTTCAACATGGTGCTAACGAATTTGCTAATAAAGATAGTCATATCAATGGGATTGAAAGTTTTTGGGGTTATGCAAAAACTCGCCTTGTACG
CTTTAGAGGGTTACAAAAACACACCTTTTACTTCCACTTGAAAGAATGTGAATTTAGGTTTAATTATAGACAAGAAGACACCTATAAATTAATTCTTAAA
TTTCTCAAAAATAAACCGCTGTTCTAGTCATGACCC
CGCCAAATAGTAAAACTTTTTTGTATTGATTTAAATGCAACCCAAATATCGCAAGTTGTTGAATTAAATAGAAATACAATAAATCGTTTATTGTTAGGCA
TAAGAGAACGCATTGCTGAATTTTGTGAGGAACAATCTCCAGTTTCTGGAGAAGTAGAGGTTGATGAAAGCTACTTCGGAGCCCGTCGCATAAAAGGGCA
ACGAGGTAGAGGAGCTAGAGGGAAAACTATTGTTTTTGGGCTATTTAAGCGTAATGGCAGGGTTTATACAGAGATAGTCCCTGACTGTTCCAGAAGCACA
TTACAAGGTATTATTCGTGGAAAAATAAGCCTTGATAGCGTCATACACTCTGACGGCTGGAGAGGCTACAATGGCTTAGTTGATCTTGGTTATCTTAAAC
ATTTTCGGGTTCAACATGGTGCTAACGAATTTGCTAATAAAGATAGTCATATCAATGGGATTGAAAGTTTTTGGGGTTATGCAAAAACTCGCCTTGTACG
CTTTAGAGGGTTACAAAAACACACCTTTTACTTCCACTTGAAAGAATGTGAATTTAGGTTTAATTATAGACAAGAAGACACCTATAAATTAATTCTTAAA
TTTCTCAAAAATAAACCGCTGTTCTAGTCATGACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
681 bp | 226 aa | 47 | 727 | + | No |
Chemistry : DDE
ORF sequence :
MTMKNKYIFRSKISEAKLRQIVKLFCIDLNATQISQVVELNRNTINRLLLGIRERIAEFCEEQSPVSGEVEVDESYFGARRIKGQRGRGARGKTIVFGLF
KRNGRVYTEIVPDCSRSTLQGIIRGKISLDSVIHSDGWRGYNGLVDLGYLKHFRVQHGANEFANKDSHINGIESFWGYAKTRLVRFRGLQKHTFYFHLKE
CEFRFNYRQEDTYKLILKFLKNKPLF
KRNGRVYTEIVPDCSRSTLQGIIRGKISLDSVIHSDGWRGYNGLVDLGYLKHFRVQHGANEFANKDSHINGIESFWGYAKTRLVRFRGLQKHTFYFHLKE
CEFRFNYRQEDTYKLILKFLKNKPLF
Blast result :
Comments
ISDli1 is 76% aa similar to ISNme3.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.