ISDeor1
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP014230 | ND | Desulfomicrobium orale | Desulfomicrobium orale DSM 12838 |
DNA section
IS Length : 722 bp
Ends
IR Length : 17
IRL : GGCTCTAGACCATCAGGCTATCGTCTGATAGGCTAGAAAAATGTTTGAAA
IRR : GGCTCTAGACCATCAGGTCTTTGTTCTTTGCCACCAAAAGTTTGAGGCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTTTTGATCAAA | TATGCTA | TTTAAACATTT | 7 |
DNA sequence
GGCTCTAGACCATCAGGCTATCGTCTGATAGGCTAGAAAAATGTTTGAAAACAGCAGGTTGAGTCGATACAAAGTCGGAAAAATCATTGAATGCTTTTGC
ATCGACATTGACGCTGCCAGAACCGCTCTGCTCCTGAAGTTGAACAGAAAGACCGTGAACAGGTACTTTCTGGCCTTCAGGCGGTTGATTTATCTCCACC
AAGTATCCAAAAAAGAGCAAATACTCGGTGTGGTTGAGGTTGATGAAAGTTTTTTTGGCCCCGCCCGGGTTCGTGGGCGGCCAGGCCCCCGAAAAAGGGG
ACGGGGCACGCTTAAACAACCGGTCTTTGGCATCTATGAGCGTGATGGAGCCGTTTACACAGAGCTGGTCACGGACTGCCCGGTCAAAACGCTTCAAGCC
ATCATCAGGGGCAAGGTTTCGCCTGAGAGCATTATCCATTCCGACTGCTGGAAAGGCTATGACGGACTGGTGGACGTGGGGTACGACAAACATTTCCGCA
TCAACAAATCCAGACACTTTGCGGAAAAATCGGTCCACATCAACGGCATCGAAGCATTCTGGAGCCTTACAAAACGCCGCCTGGCAAAGTTTAACGGTGT
GAAGCAGAATTTCGAGCTCCACCTCAAGGAGTGTGAATGGCGCTACAATCGAGCGCTGCCACAACTCCTCGCCAGCCTCAAACTTTTGGTGGCAAAGAAC
AAAGACCTGATGGTCTAGAGCC
ATCGACATTGACGCTGCCAGAACCGCTCTGCTCCTGAAGTTGAACAGAAAGACCGTGAACAGGTACTTTCTGGCCTTCAGGCGGTTGATTTATCTCCACC
AAGTATCCAAAAAAGAGCAAATACTCGGTGTGGTTGAGGTTGATGAAAGTTTTTTTGGCCCCGCCCGGGTTCGTGGGCGGCCAGGCCCCCGAAAAAGGGG
ACGGGGCACGCTTAAACAACCGGTCTTTGGCATCTATGAGCGTGATGGAGCCGTTTACACAGAGCTGGTCACGGACTGCCCGGTCAAAACGCTTCAAGCC
ATCATCAGGGGCAAGGTTTCGCCTGAGAGCATTATCCATTCCGACTGCTGGAAAGGCTATGACGGACTGGTGGACGTGGGGTACGACAAACATTTCCGCA
TCAACAAATCCAGACACTTTGCGGAAAAATCGGTCCACATCAACGGCATCGAAGCATTCTGGAGCCTTACAAAACGCCGCCTGGCAAAGTTTAACGGTGT
GAAGCAGAATTTCGAGCTCCACCTCAAGGAGTGTGAATGGCGCTACAATCGAGCGCTGCCACAACTCCTCGCCAGCCTCAAACTTTTGGTGGCAAAGAAC
AAAGACCTGATGGTCTAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
678 bp | 225 aa | 41 | 718 | + | No |
Chemistry : DDE
ORF sequence :
MFENSRLSRYKVGKIIECFCIDIDAARTALLLKLNRKTVNRYFLAFRRLIYLHQVSKKEQILGVVEVDESFFGPARVRGRPGPRKRGRGTLKQPVFGIYE
RDGAVYTELVTDCPVKTLQAIIRGKVSPESIIHSDCWKGYDGLVDVGYDKHFRINKSRHFAEKSVHINGIEAFWSLTKRRLAKFNGVKQNFELHLKECEW
RYNRALPQLLASLKLLVAKNKDLMV
RDGAVYTELVTDCPVKTLQAIIRGKVSPESIIHSDCWKGYDGLVDVGYDKHFRINKSRHFAEKSVHINGIEAFWSLTKRRLAKFNGVKQNFELHLKECEW
RYNRALPQLLASLKLLVAKNKDLMV
Blast result :
Comments
ISDeor1 is 75% aa similar to ISAcra1.
References
1] ISfinder annotation (2017)
2] Holder,M.E., Ajami,N.J. and Petrosino,J.F. (2016) Direct GenBank submission.
2] Holder,M.E., Ajami,N.J. and Petrosino,J.F. (2016) Direct GenBank submission.