ISDeor1

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP014230 ND Desulfomicrobium orale
Desulfomicrobium orale DSM 12838
DNA section
IS Length : 722 bp

Ends


IR Length : 17

IRL : GGCTCTAGACCATCAGGCTATCGTCTGATAGGCTAGAAAAATGTTTGAAA
IRR : GGCTCTAGACCATCAGGTCTTTGTTCTTTGCCACCAAAAGTTTGAGGCTG

Insertion site


Left flankDirect repeatRight flankDR Length
TTTTTTGATCAAATATGCTATTTAAACATTT7

DNA sequence

GGCTCTAGACCATCAGGCTATCGTCTGATAGGCTAGAAAAATGTTTGAAAACAGCAGGTTGAGTCGATACAAAGTCGGAAAAATCATTGAATGCTTTTGC
ATCGACATTGACGCTGCCAGAACCGCTCTGCTCCTGAAGTTGAACAGAAAGACCGTGAACAGGTACTTTCTGGCCTTCAGGCGGTTGATTTATCTCCACC
AAGTATCCAAAAAAGAGCAAATACTCGGTGTGGTTGAGGTTGATGAAAGTTTTTTTGGCCCCGCCCGGGTTCGTGGGCGGCCAGGCCCCCGAAAAAGGGG
ACGGGGCACGCTTAAACAACCGGTCTTTGGCATCTATGAGCGTGATGGAGCCGTTTACACAGAGCTGGTCACGGACTGCCCGGTCAAAACGCTTCAAGCC
ATCATCAGGGGCAAGGTTTCGCCTGAGAGCATTATCCATTCCGACTGCTGGAAAGGCTATGACGGACTGGTGGACGTGGGGTACGACAAACATTTCCGCA
TCAACAAATCCAGACACTTTGCGGAAAAATCGGTCCACATCAACGGCATCGAAGCATTCTGGAGCCTTACAAAACGCCGCCTGGCAAAGTTTAACGGTGT
GAAGCAGAATTTCGAGCTCCACCTCAAGGAGTGTGAATGGCGCTACAATCGAGCGCTGCCACAACTCCTCGCCAGCCTCAAACTTTTGGTGGCAAAGAAC
AAAGACCTGATGGTCTAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
678 bp225 aa41718+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFENSRLSRYKVGKIIECFCIDIDAARTALLLKLNRKTVNRYFLAFRRLIYLHQVSKKEQILGVVEVDESFFGPARVRGRPGPRKRGRGTLKQPVFGIYE
RDGAVYTELVTDCPVKTLQAIIRGKVSPESIIHSDCWKGYDGLVDVGYDKHFRINKSRHFAEKSVHINGIEAFWSLTKRRLAKFNGVKQNFELHLKECEW
RYNRALPQLLASLKLLVAKNKDLMV

 

Blast result :
Comments
ISDeor1 is 75% aa similar to ISAcra1.
References
1] ISfinder annotation (2017)
2] Holder,M.E., Ajami,N.J. and Petrosino,J.F. (2016) Direct GenBank submission.