ISNol1
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FODO01000009 | ND | Nitrosomonas oligotropha | Nitrosomonas oligotropha Nm76 |
DNA section
IS Length : 726 bp
Ends
IR Length : 16/17
IRL : GGCTCTAGACTAGCAGACACGATCTGTTAGTTTAGCAAGATGTTAAGAAA
IRR : GGCTCTAGACTAGCAAAGTTAATAATATCTGATGATTTGCCATAGTTCAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGCCGACTCTATAA | TAATAAA | TATTGACTGTA | 7 |
DNA sequence
GGCTCTAGACTAGCAGACACGATCTGTTAGTTTAGCAAGATGTTAAGAAACAGTAAATTAAGTGATTATTACATTAGAAAAATAATTCAATGCTTTTGCA
TTGATATACCTGCCAGCAAAACAGCTCTGCTGTTAGGTAAAAATCGTAACACGATTAATCGTTGGTATGGCATTTTCAGGCAAGTAATCTATAGCCATCA
GACTGCCCTTAAAGACAAGCTGTTAGGCAAAGTGGAAGTTGATGAAAGCTATTTTGGTGCGAAACGGCATCGAGGTTATCATGGGAAACTCAAACGCGGT
CGCGGGACATTAAAACAGCCTGTATTTGGTGTGTTTGAGCGAGATGGCAGGGTATACACCGAAATAGTACCGGACTGTAAGCGCTTGACCTTACAAGCGG
TAATACTGGGTAAAGTATCCATTGAAAGTGTCATCTATAGTGATGGCTGGCGTGGTTATAATGGTTTGGTAGATGTAGGATACTCCAAGCATTTTCGTGT
ATCCCATGGTGATAATGAATTTGCGCGGGATGGGCATTGCCATATTAACGGTATTGAATCGTTTTGGAGTTTTACCAAGCGGCGGTTGGCAAAGTTTAAC
GGTGTGTCGGTTAACTTTGAGCTGCATTTAAAAGAATCTGAATGGCGTTGGAAAAAACAACCTGATGCACTTGCTAATGAACTATGGCAAATCATCAGAT
ATTATTAACTTTGCTAGTCTAGAGCC
TTGATATACCTGCCAGCAAAACAGCTCTGCTGTTAGGTAAAAATCGTAACACGATTAATCGTTGGTATGGCATTTTCAGGCAAGTAATCTATAGCCATCA
GACTGCCCTTAAAGACAAGCTGTTAGGCAAAGTGGAAGTTGATGAAAGCTATTTTGGTGCGAAACGGCATCGAGGTTATCATGGGAAACTCAAACGCGGT
CGCGGGACATTAAAACAGCCTGTATTTGGTGTGTTTGAGCGAGATGGCAGGGTATACACCGAAATAGTACCGGACTGTAAGCGCTTGACCTTACAAGCGG
TAATACTGGGTAAAGTATCCATTGAAAGTGTCATCTATAGTGATGGCTGGCGTGGTTATAATGGTTTGGTAGATGTAGGATACTCCAAGCATTTTCGTGT
ATCCCATGGTGATAATGAATTTGCGCGGGATGGGCATTGCCATATTAACGGTATTGAATCGTTTTGGAGTTTTACCAAGCGGCGGTTGGCAAAGTTTAAC
GGTGTGTCGGTTAACTTTGAGCTGCATTTAAAAGAATCTGAATGGCGTTGGAAAAAACAACCTGATGCACTTGCTAATGAACTATGGCAAATCATCAGAT
ATTATTAACTTTGCTAGTCTAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
669 bp | 222 aa | 40 | 708 | + | No |
Chemistry : DDE
ORF sequence :
MLRNSKLSDYYIRKIIQCFCIDIPASKTALLLGKNRNTINRWYGIFRQVIYSHQTALKDKLLGKVEVDESYFGAKRHRGYHGKLKRGRGTLKQPVFGVFE
RDGRVYTEIVPDCKRLTLQAVILGKVSIESVIYSDGWRGYNGLVDVGYSKHFRVSHGDNEFARDGHCHINGIESFWSFTKRRLAKFNGVSVNFELHLKES
EWRWKKQPDALANELWQIIRYY
RDGRVYTEIVPDCKRLTLQAVILGKVSIESVIYSDGWRGYNGLVDVGYSKHFRVSHGDNEFARDGHCHINGIESFWSFTKRRLAKFNGVSVNFELHLKES
EWRWKKQPDALANELWQIIRYY
Blast result :
Comments
ISNol1 is 87% aa similar to ISAcra1.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.