ISNol1

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FODO01000009 ND Nitrosomonas oligotropha
Nitrosomonas oligotropha Nm76
DNA section
IS Length : 726 bp

Ends


IR Length : 16/17

IRL : GGCTCTAGACTAGCAGACACGATCTGTTAGTTTAGCAAGATGTTAAGAAA
IRR : GGCTCTAGACTAGCAAAGTTAATAATATCTGATGATTTGCCATAGTTCAT

Insertion site


Left flankDirect repeatRight flankDR Length
TGCCGACTCTATAATAATAAATATTGACTGTA7

DNA sequence

GGCTCTAGACTAGCAGACACGATCTGTTAGTTTAGCAAGATGTTAAGAAACAGTAAATTAAGTGATTATTACATTAGAAAAATAATTCAATGCTTTTGCA
TTGATATACCTGCCAGCAAAACAGCTCTGCTGTTAGGTAAAAATCGTAACACGATTAATCGTTGGTATGGCATTTTCAGGCAAGTAATCTATAGCCATCA
GACTGCCCTTAAAGACAAGCTGTTAGGCAAAGTGGAAGTTGATGAAAGCTATTTTGGTGCGAAACGGCATCGAGGTTATCATGGGAAACTCAAACGCGGT
CGCGGGACATTAAAACAGCCTGTATTTGGTGTGTTTGAGCGAGATGGCAGGGTATACACCGAAATAGTACCGGACTGTAAGCGCTTGACCTTACAAGCGG
TAATACTGGGTAAAGTATCCATTGAAAGTGTCATCTATAGTGATGGCTGGCGTGGTTATAATGGTTTGGTAGATGTAGGATACTCCAAGCATTTTCGTGT
ATCCCATGGTGATAATGAATTTGCGCGGGATGGGCATTGCCATATTAACGGTATTGAATCGTTTTGGAGTTTTACCAAGCGGCGGTTGGCAAAGTTTAAC
GGTGTGTCGGTTAACTTTGAGCTGCATTTAAAAGAATCTGAATGGCGTTGGAAAAAACAACCTGATGCACTTGCTAATGAACTATGGCAAATCATCAGAT
ATTATTAACTTTGCTAGTCTAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
669 bp222 aa40708+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLRNSKLSDYYIRKIIQCFCIDIPASKTALLLGKNRNTINRWYGIFRQVIYSHQTALKDKLLGKVEVDESYFGAKRHRGYHGKLKRGRGTLKQPVFGVFE
RDGRVYTEIVPDCKRLTLQAVILGKVSIESVIYSDGWRGYNGLVDVGYSKHFRVSHGDNEFARDGHCHINGIESFWSFTKRRLAKFNGVSVNFELHLKES
EWRWKKQPDALANELWQIIRYY

 

Blast result :
Comments
ISNol1 is 87% aa similar to ISAcra1.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.