ISNiha1

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FNOY01000105 ND Nitrosomonas halophila
Nitrosomonas halophila Nm1
DNA section
IS Length : 967 bp

Ends


IR Length : 26/31

IRL : TATGCCTCTAAACTATTTTCAGTATTTTCTGCCAAATGCTTTTAGATCAA
IRR : TATGCCTCTATACAATTTTCAGTTTGATCTGAGTGTGCATCAGGCAGGCA

Insertion site


Left flankDirect repeatRight flankDR Length
TGGAAAAGCATAGTATTAATTTAATCAATAGTG0

DNA sequence

TATGCCTCTAAACTATTTTCAGTATTTTCTGCCAAATGCTTTTAGATCAACGACATAGGGAGCTGTATCATGAGAGCATTGGAAATTAATTTGCTGGATT
GGCAGAAACGATATGGGACGGAAGAAGCCTGTGTGCAGGCGCTGATGCAACAACGCTGGCCGGAAGGGTTCCGTTGCCAGCGCTGCGGGCATGATCATGG
CTATGTCATCAGTACACGCTATTCCTGGGAGTGCTCCAAGTGCCATTACCAAACTTCACTGACGGCGGGGACGCTGTTTCATTCCACCCATCTGCCGCTA
ACTAAATGGTTCTGGGCGATTTACCTGACTGCCTCGGACAAGGGTGGCATTTCTGCTGTACATCTTTCTAAACAAATCCAGGTATCCTGGATTACGGCTT
ACCGGATATTGCGCAAGATTCGCATGACCATGGGGCACAGGGATAGTATCTATCGGCTGCACAATCTGATTGAAATTGACGATGCCTTGGTGGGTGGTCG
CCGTAGTGGAAAGCGAGGTCGCGGTGCTGAGGGAAAAATCCCGGTACTGGTGGCAATTGAGAACCGGGGCAAGTGTGCCGGGTTTATCGCCATGCAACAG
GTCTCTGCTGTGACGCATGAAACCGTAGCAAGGTTTGTTCAATGTCATCTCCCGCCCAGCCAGTGGGTGCGTAGTGATGCGCTGGCTTCCCTGACGGAAA
TTGGCAAAACCCAACATCATGCCGCACGGGTGACGCCGCCTGATAAGGTGGGCAAGTGGCTGCCCTGGGTGCATATTGCCATTGGAAACCTCAAAGCGTT
TCTGTTGGGCACTTATCACGGTGTATCGTTCGGGTATCTGCAGGAATATCTCAATGAATTCTGCTATCGGTTCAACCGGCGCAGGTGGGAAGCCGAGTTA
CCACTACGCCTTCTCAATGCCTGCCTGATGCACACTCAGATCAAACTGAAAATTGTATAGAGGCATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
891 bp296 aa70960+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRALEINLLDWQKRYGTEEACVQALMQQRWPEGFRCQRCGHDHGYVISTRYSWECSKCHYQTSLTAGTLFHSTHLPLTKWFWAIYLTASDKGGISAVHLS
KQIQVSWITAYRILRKIRMTMGHRDSIYRLHNLIEIDDALVGGRRSGKRGRGAEGKIPVLVAIENRGKCAGFIAMQQVSAVTHETVARFVQCHLPPSQWV
RSDALASLTEIGKTQHHAARVTPPDKVGKWLPWVHIAIGNLKAFLLGTYHGVSFGYLQEYLNEFCYRFNRRRWEAELPLRLLNACLMHTQIKLKIV

 

Blast result :
Comments
ISNiha1 is 91% aa similar to ISThde1.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.