ISNiha1
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FNOY01000105 | ND | Nitrosomonas halophila | Nitrosomonas halophila Nm1 |
DNA section
IS Length : 967 bp
Ends
IR Length : 26/31
IRL : TATGCCTCTAAACTATTTTCAGTATTTTCTGCCAAATGCTTTTAGATCAA
IRR : TATGCCTCTATACAATTTTCAGTTTGATCTGAGTGTGCATCAGGCAGGCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGGAAAAGCATAGTAT | TAATTTAATCAATAGTG | 0 |
DNA sequence
TATGCCTCTAAACTATTTTCAGTATTTTCTGCCAAATGCTTTTAGATCAACGACATAGGGAGCTGTATCATGAGAGCATTGGAAATTAATTTGCTGGATT
GGCAGAAACGATATGGGACGGAAGAAGCCTGTGTGCAGGCGCTGATGCAACAACGCTGGCCGGAAGGGTTCCGTTGCCAGCGCTGCGGGCATGATCATGG
CTATGTCATCAGTACACGCTATTCCTGGGAGTGCTCCAAGTGCCATTACCAAACTTCACTGACGGCGGGGACGCTGTTTCATTCCACCCATCTGCCGCTA
ACTAAATGGTTCTGGGCGATTTACCTGACTGCCTCGGACAAGGGTGGCATTTCTGCTGTACATCTTTCTAAACAAATCCAGGTATCCTGGATTACGGCTT
ACCGGATATTGCGCAAGATTCGCATGACCATGGGGCACAGGGATAGTATCTATCGGCTGCACAATCTGATTGAAATTGACGATGCCTTGGTGGGTGGTCG
CCGTAGTGGAAAGCGAGGTCGCGGTGCTGAGGGAAAAATCCCGGTACTGGTGGCAATTGAGAACCGGGGCAAGTGTGCCGGGTTTATCGCCATGCAACAG
GTCTCTGCTGTGACGCATGAAACCGTAGCAAGGTTTGTTCAATGTCATCTCCCGCCCAGCCAGTGGGTGCGTAGTGATGCGCTGGCTTCCCTGACGGAAA
TTGGCAAAACCCAACATCATGCCGCACGGGTGACGCCGCCTGATAAGGTGGGCAAGTGGCTGCCCTGGGTGCATATTGCCATTGGAAACCTCAAAGCGTT
TCTGTTGGGCACTTATCACGGTGTATCGTTCGGGTATCTGCAGGAATATCTCAATGAATTCTGCTATCGGTTCAACCGGCGCAGGTGGGAAGCCGAGTTA
CCACTACGCCTTCTCAATGCCTGCCTGATGCACACTCAGATCAAACTGAAAATTGTATAGAGGCATA
GGCAGAAACGATATGGGACGGAAGAAGCCTGTGTGCAGGCGCTGATGCAACAACGCTGGCCGGAAGGGTTCCGTTGCCAGCGCTGCGGGCATGATCATGG
CTATGTCATCAGTACACGCTATTCCTGGGAGTGCTCCAAGTGCCATTACCAAACTTCACTGACGGCGGGGACGCTGTTTCATTCCACCCATCTGCCGCTA
ACTAAATGGTTCTGGGCGATTTACCTGACTGCCTCGGACAAGGGTGGCATTTCTGCTGTACATCTTTCTAAACAAATCCAGGTATCCTGGATTACGGCTT
ACCGGATATTGCGCAAGATTCGCATGACCATGGGGCACAGGGATAGTATCTATCGGCTGCACAATCTGATTGAAATTGACGATGCCTTGGTGGGTGGTCG
CCGTAGTGGAAAGCGAGGTCGCGGTGCTGAGGGAAAAATCCCGGTACTGGTGGCAATTGAGAACCGGGGCAAGTGTGCCGGGTTTATCGCCATGCAACAG
GTCTCTGCTGTGACGCATGAAACCGTAGCAAGGTTTGTTCAATGTCATCTCCCGCCCAGCCAGTGGGTGCGTAGTGATGCGCTGGCTTCCCTGACGGAAA
TTGGCAAAACCCAACATCATGCCGCACGGGTGACGCCGCCTGATAAGGTGGGCAAGTGGCTGCCCTGGGTGCATATTGCCATTGGAAACCTCAAAGCGTT
TCTGTTGGGCACTTATCACGGTGTATCGTTCGGGTATCTGCAGGAATATCTCAATGAATTCTGCTATCGGTTCAACCGGCGCAGGTGGGAAGCCGAGTTA
CCACTACGCCTTCTCAATGCCTGCCTGATGCACACTCAGATCAAACTGAAAATTGTATAGAGGCATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
891 bp | 296 aa | 70 | 960 | + | No |
Chemistry : DDE
ORF sequence :
MRALEINLLDWQKRYGTEEACVQALMQQRWPEGFRCQRCGHDHGYVISTRYSWECSKCHYQTSLTAGTLFHSTHLPLTKWFWAIYLTASDKGGISAVHLS
KQIQVSWITAYRILRKIRMTMGHRDSIYRLHNLIEIDDALVGGRRSGKRGRGAEGKIPVLVAIENRGKCAGFIAMQQVSAVTHETVARFVQCHLPPSQWV
RSDALASLTEIGKTQHHAARVTPPDKVGKWLPWVHIAIGNLKAFLLGTYHGVSFGYLQEYLNEFCYRFNRRRWEAELPLRLLNACLMHTQIKLKIV
KQIQVSWITAYRILRKIRMTMGHRDSIYRLHNLIEIDDALVGGRRSGKRGRGAEGKIPVLVAIENRGKCAGFIAMQQVSAVTHETVARFVQCHLPPSQWV
RSDALASLTEIGKTQHHAARVTPPDKVGKWLPWVHIAIGNLKAFLLGTYHGVSFGYLQEYLNEFCYRFNRRRWEAELPLRLLNACLMHTQIKLKIV
Blast result :
Comments
ISNiha1 is 91% aa similar to ISThde1.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.