ISGps1
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003837 | ND | Glaciecola psychrophila | Glaciecola psychrophila 170 |
DNA section
IS Length : 974 bp
Ends
IR Length : 19/25
IRL : CATGCCTATGCAGATAACTCAGGACTGAACTGTACTGTATATACAAACAC
IRR : CATGCTTATGCACCTGGCTCAGGTCGATTTTACAGGTAAGTGAATTATTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACCTTGAGTAA | TTTTACTA | TTAATAATTGTT | 8 |
TTAACGATTTA | AAATAGTA | AGAGATGTAA | 8 |
AAGAAAAGATA | TAATTTAT | TGATAGTGAATA | 8 |
TTAACGATTTA | AAATAGTA | AGAGATGTAACC | 8 |
TAAATTCTATAA TAGAATAT | TAGAATAA TGTAAAGTATTA | 0 | |
GTTGGATTGTCA TTATGTTA | TTACGTTA TCACCATGGATA | 0 | |
GGCTTGGCTTA | TTTTCTTT | TAAACAATAAGC | 8 |
DNA sequence
CATGCCTATGCAGATAACTCAGGACTGAACTGTACTGTATATACAAACACCCTGTATAGGTAACCATTACCATGAACATGCCAGAAGCAAGCTTTTTAGC
TTGGCAAAAACAGTTTAGTACAGAAGATGATTGCTTAAAATACTTGCAACAAATGAAATGGCTAAATGGCTTTATTTGCCCTGGTTGTGGCAATAACCAT
AGCTATGAAATTACAAGTCATCATTTATACGAGTGTACACAATGTAAAAAGCAGACCTCAGTCATGTCAGGAACACTTTTTCACGGCAGCAAAATCACCT
TGAACCAGTGGTTTTGGGCTATCTATTCTCTTGGCTCTGATAAGGGAAGTATCTCAGCACTGAGACTCAGTAAATTAATAGAAGTCAATTGGCGAACCGC
GAGGCTGATTTTAAAGAAACTTAAAACGGCTATGGGGCATAGAGATAGTTTATATCAATTAAGTGGCACAATAGAGCTAGACGACGCTCTGGTTGGCGGT
AGACAAAAAGGCAAACGAGGACGCGGAGCAGCAGGAAAAAAGAATGTGCTGATAGCCTGTGAAAGTAAGGATAAAAAAGCAGGATTTATCGCAATGGCAG
TGGTCGATAGCATTTGTCATTTTAGCGTGAATGAATTCGTCAAGAAACACTTGAAACAAGGCCAACAAGTTCATTCTGATGCATTGCCGGCATTGAATAT
TATAGGTCAAACAGAAAACTATGAGGCAAGAGTAACCCCGGGTTATTTAGTTGATGAATGGTTACCGTGGGTACATATAGCCATCGGCAATTTAAGAACG
TTTTTGTTAGGTACGTTTCATGGTGTAACCGGAAAATACCTACAAGAATACTTTGATGAGTTCTGTTATCGGTTCAATCGTCGATTTATCGAAAAACAAA
TACCTAACCGATTGTTAAACTTAGCAATAATTCACTTACCTGTAAAATCGACCTGAGCCAGGTGCATAAGCATG
TTGGCAAAAACAGTTTAGTACAGAAGATGATTGCTTAAAATACTTGCAACAAATGAAATGGCTAAATGGCTTTATTTGCCCTGGTTGTGGCAATAACCAT
AGCTATGAAATTACAAGTCATCATTTATACGAGTGTACACAATGTAAAAAGCAGACCTCAGTCATGTCAGGAACACTTTTTCACGGCAGCAAAATCACCT
TGAACCAGTGGTTTTGGGCTATCTATTCTCTTGGCTCTGATAAGGGAAGTATCTCAGCACTGAGACTCAGTAAATTAATAGAAGTCAATTGGCGAACCGC
GAGGCTGATTTTAAAGAAACTTAAAACGGCTATGGGGCATAGAGATAGTTTATATCAATTAAGTGGCACAATAGAGCTAGACGACGCTCTGGTTGGCGGT
AGACAAAAAGGCAAACGAGGACGCGGAGCAGCAGGAAAAAAGAATGTGCTGATAGCCTGTGAAAGTAAGGATAAAAAAGCAGGATTTATCGCAATGGCAG
TGGTCGATAGCATTTGTCATTTTAGCGTGAATGAATTCGTCAAGAAACACTTGAAACAAGGCCAACAAGTTCATTCTGATGCATTGCCGGCATTGAATAT
TATAGGTCAAACAGAAAACTATGAGGCAAGAGTAACCCCGGGTTATTTAGTTGATGAATGGTTACCGTGGGTACATATAGCCATCGGCAATTTAAGAACG
TTTTTGTTAGGTACGTTTCATGGTGTAACCGGAAAATACCTACAAGAATACTTTGATGAGTTCTGTTATCGGTTCAATCGTCGATTTATCGAAAAACAAA
TACCTAACCGATTGTTAAACTTAGCAATAATTCACTTACCTGTAAAATCGACCTGAGCCAGGTGCATAAGCATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
885 bp | 294 aa | 72 | 956 | + | No |
Chemistry : DDE
ORF sequence :
MNMPEASFLAWQKQFSTEDDCLKYLQQMKWLNGFICPGCGNNHSYEITSHHLYECTQCKKQTSVMSGTLFHGSKITLNQWFWAIYSLGSDKGSISALRLS
KLIEVNWRTARLILKKLKTAMGHRDSLYQLSGTIELDDALVGGRQKGKRGRGAAGKKNVLIACESKDKKAGFIAMAVVDSICHFSVNEFVKKHLKQGQQV
HSDALPALNIIGQTENYEARVTPGYLVDEWLPWVHIAIGNLRTFLLGTFHGVTGKYLQEYFDEFCYRFNRRFIEKQIPNRLLNLAIIHLPVKST
KLIEVNWRTARLILKKLKTAMGHRDSLYQLSGTIELDDALVGGRQKGKRGRGAAGKKNVLIACESKDKKAGFIAMAVVDSICHFSVNEFVKKHLKQGQQV
HSDALPALNIIGQTENYEARVTPGYLVDEWLPWVHIAIGNLRTFLLGTFHGVTGKYLQEYFDEFCYRFNRRFIEKQIPNRLLNLAIIHLPVKST
Blast result :
Comments
ISGps1 is 87% aa similar to ISPpr5.
References
1] ISfinder annotation (2017).
2] Yin,J., Chen,J., Liu,G., Yu,Y., Song,L., Wang,X. and Qu,X. (2013) Genome Announc 1 (3), E00199-13.
2] Yin,J., Chen,J., Liu,G., Yu,Y., Song,L., Wang,X. and Qu,X. (2013) Genome Announc 1 (3), E00199-13.