ISGps1

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003837 ND Glaciecola psychrophila
Glaciecola psychrophila 170
DNA section
IS Length : 974 bp

Ends


IR Length : 19/25

IRL : CATGCCTATGCAGATAACTCAGGACTGAACTGTACTGTATATACAAACAC
IRR : CATGCTTATGCACCTGGCTCAGGTCGATTTTACAGGTAAGTGAATTATTG

Insertion site


Left flankDirect repeatRight flankDR Length
ACCTTGAGTAATTTTACTATTAATAATTGTT8
TTAACGATTTAAAATAGTAAGAGATGTAA8
AAGAAAAGATATAATTTATTGATAGTGAATA8
TTAACGATTTAAAATAGTAAGAGATGTAACC8
TAAATTCTATAA TAGAATATTAGAATAA TGTAAAGTATTA0
GTTGGATTGTCA TTATGTTATTACGTTA TCACCATGGATA0
GGCTTGGCTTATTTTCTTTTAAACAATAAGC8

DNA sequence

CATGCCTATGCAGATAACTCAGGACTGAACTGTACTGTATATACAAACACCCTGTATAGGTAACCATTACCATGAACATGCCAGAAGCAAGCTTTTTAGC
TTGGCAAAAACAGTTTAGTACAGAAGATGATTGCTTAAAATACTTGCAACAAATGAAATGGCTAAATGGCTTTATTTGCCCTGGTTGTGGCAATAACCAT
AGCTATGAAATTACAAGTCATCATTTATACGAGTGTACACAATGTAAAAAGCAGACCTCAGTCATGTCAGGAACACTTTTTCACGGCAGCAAAATCACCT
TGAACCAGTGGTTTTGGGCTATCTATTCTCTTGGCTCTGATAAGGGAAGTATCTCAGCACTGAGACTCAGTAAATTAATAGAAGTCAATTGGCGAACCGC
GAGGCTGATTTTAAAGAAACTTAAAACGGCTATGGGGCATAGAGATAGTTTATATCAATTAAGTGGCACAATAGAGCTAGACGACGCTCTGGTTGGCGGT
AGACAAAAAGGCAAACGAGGACGCGGAGCAGCAGGAAAAAAGAATGTGCTGATAGCCTGTGAAAGTAAGGATAAAAAAGCAGGATTTATCGCAATGGCAG
TGGTCGATAGCATTTGTCATTTTAGCGTGAATGAATTCGTCAAGAAACACTTGAAACAAGGCCAACAAGTTCATTCTGATGCATTGCCGGCATTGAATAT
TATAGGTCAAACAGAAAACTATGAGGCAAGAGTAACCCCGGGTTATTTAGTTGATGAATGGTTACCGTGGGTACATATAGCCATCGGCAATTTAAGAACG
TTTTTGTTAGGTACGTTTCATGGTGTAACCGGAAAATACCTACAAGAATACTTTGATGAGTTCTGTTATCGGTTCAATCGTCGATTTATCGAAAAACAAA
TACCTAACCGATTGTTAAACTTAGCAATAATTCACTTACCTGTAAAATCGACCTGAGCCAGGTGCATAAGCATG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
885 bp294 aa72956+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNMPEASFLAWQKQFSTEDDCLKYLQQMKWLNGFICPGCGNNHSYEITSHHLYECTQCKKQTSVMSGTLFHGSKITLNQWFWAIYSLGSDKGSISALRLS
KLIEVNWRTARLILKKLKTAMGHRDSLYQLSGTIELDDALVGGRQKGKRGRGAAGKKNVLIACESKDKKAGFIAMAVVDSICHFSVNEFVKKHLKQGQQV
HSDALPALNIIGQTENYEARVTPGYLVDEWLPWVHIAIGNLRTFLLGTFHGVTGKYLQEYFDEFCYRFNRRFIEKQIPNRLLNLAIIHLPVKST

 

Blast result :
Comments
ISGps1 is 87% aa similar to ISPpr5.
References
1] ISfinder annotation (2017).
2] Yin,J., Chen,J., Liu,G., Yu,Y., Song,L., Wang,X. and Qu,X. (2013) Genome Announc 1 (3), E00199-13.